Guide to the Human Genome
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Name: R3HDML Sequence: fasta or formatted (253aa) NCBI GI: 30425410
Description:

R3H domain containing-like

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         24           2
 C cysteine            4.7         12           1
 D aspartate           2.4          6           1
 E glutamate           2.8          7           2
 F phenylalanine       2.0          5           1
 G glycine             5.9         15           1
 H histidine           4.0         10           1
 I isoleucine          3.6          9           1
 K lysine              4.0         10           1
 L leucine             7.5         19           2
 M methionine          4.3         11           1
 N asparagine          5.5         14           1
 P proline             7.5         19           2
 Q glutamine           3.2          8           1
 R arginine            5.9         15           2
 S serine              9.5         24           2
 T threonine           3.6          9           1
 V valine              4.7         12           2
 W tryptophan          4.7         12           1
 Y tyrosine            4.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   R3H domain containing-like 
PI15                  0.572   protease inhibitor 15 preproprotein 
CRISPLD1              0.445   cysteine-rich secretory protein LCCL domain containi...
CRISPLD2              0.428   cysteine-rich secretory protein LCCL domain containi...
PI16                  0.189   protease inhibitor 16 precursor 
GLIPR1L1              0.153   GLI pathogenesis-related 1 like 1 
GLIPR1                0.147   GLI pathogenesis-related 1 precursor 
CRISP3                0.132   cysteine-rich secretory protein 3 
CLEC18B               0.126   C-type lectin domain family 18, member B 
GLIPR1L2              0.126   GLI pathogenesis-related 1 like 2 
CLEC18C               0.126   mannose receptor-like 
CLEC18A               0.125   secretory protein LOC348174 
CLEC18A               0.125   secretory protein LOC348174 
CRISP2                0.115   cysteine-rich secretory protein 2 
CRISP2                0.115   cysteine-rich secretory protein 2 
CRISP2                0.115   cysteine-rich secretory protein 2 
CRISP2                0.115   cysteine-rich secretory protein 2 
CRISP2                0.115   cysteine-rich secretory protein 2 
CRISP1                0.094   acidic epididymal glycoprotein-like 1 isoform 1 prec...
CRISP1                0.058   acidic epididymal glycoprotein-like 1 isoform 2 prec...
GLIPR2                0.011   GLI pathogenesis-related 2 
AFF3                  0.011   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.011   AF4/FMR2 family, member 3 isoform 1 
SORCS2                0.009   VPS10 domain receptor protein SORCS 2 
CRIPAK                0.009   cysteine-rich PAK1 inhibitor 
DOM3Z                 0.008   DOM-3 homolog Z 
LAMA1                 0.008   laminin, alpha 1 precursor 
SYNE1                 0.006   spectrin repeat containing, nuclear envelope 1 isofo...
THSD7A                0.006   thrombospondin, type I, domain containing 7A 
THSD7B                0.006   thrombospondin, type I, domain containing 7B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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