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Search of human proteins with 30410803
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30410803 CUB domain-containing protein 1 isoform 2 [Homo
sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30410803 CUB domain-containing protein 1 isoform 2 [Homo sapi... 692 0.0
gi|30410805 CUB domain-containing protein 1 isoform 1 [Homo sapi... 689 0.0
gi|73623026 mannan-binding lectin serine protease 1 isoform 3 [H... 40 0.004
gi|21264359 mannan-binding lectin serine protease 1 isoform 2 pr... 40 0.004
gi|21264357 mannan-binding lectin serine protease 1 isoform 1 pr... 40 0.004
gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo sa... 33 0.37
gi|6912724 tolloid-like 2 [Homo sapiens] 33 0.48
gi|24308436 methionine-tRNA synthetase 2 precursor [Homo sapiens] 33 0.48
gi|22547221 tolloid-like 1 [Homo sapiens] 32 0.83
gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens] 32 0.83
gi|13899255 membrane frizzled-related protein [Homo sapiens] 31 1.8
gi|236459851 ubinuclein 2 [Homo sapiens] 30 3.1
gi|126091152 cubilin [Homo sapiens] 30 4.1
gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens] 30 4.1
gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens] 30 4.1
gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens] 30 4.1
gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens] 30 4.1
gi|4507399 transcription factor 4 isoform b [Homo sapiens] 29 5.4
gi|145312267 transcription factor 4 isoform a [Homo sapiens] 29 5.4
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 29 5.4
gi|148231605 ovochymase 2 [Homo sapiens] 29 7.0
gi|42476076 hypothetical protein LOC22878 [Homo sapiens] 29 7.0
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 28 9.1
gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo sa... 28 9.1
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 28 9.1
gi|116235485 delta-notch-like EGF repeat-containing transmembran... 28 9.1
>gi|30410803 CUB domain-containing protein 1 isoform 2 [Homo
sapiens]
Length = 343
Score = 692 bits (1786), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI 60
MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI
Sbjct: 1 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI 60
Query: 61 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT 120
SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT
Sbjct: 61 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT 120
Query: 121 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN 180
LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN
Sbjct: 121 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN 180
Query: 181 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY 240
GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY
Sbjct: 181 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY 240
Query: 241 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK 300
PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK
Sbjct: 241 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK 300
Query: 301 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESSE 343
QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESSE
Sbjct: 301 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESSE 343
>gi|30410805 CUB domain-containing protein 1 isoform 1 [Homo
sapiens]
Length = 836
Score = 689 bits (1779), Expect = 0.0
Identities = 341/343 (99%), Positives = 343/343 (100%)
Query: 1 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI 60
MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI
Sbjct: 1 MAGLNCGVSIALLGVLLLGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVI 60
Query: 61 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT 120
SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT
Sbjct: 61 SKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGPCPFGEVQLQPSTSLLPT 120
Query: 121 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN 180
LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN
Sbjct: 121 LNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATVVRIGTFCSN 180
Query: 181 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY 240
GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY
Sbjct: 181 GTVSRIKMQEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANY 240
Query: 241 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK 300
PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK
Sbjct: 241 PEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDK 300
Query: 301 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESSE 343
QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNES++
Sbjct: 301 QPGNMAGNFNLSLQGCDQDAQSPGILRLQFQVLVQHPQNESNK 343
Score = 44.3 bits (103), Expect = 2e-04
Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 8/218 (3%)
Query: 56 CYIVISKRHITM-LSIKSGERIVFTFSCQSPENHFVIEIQKNIDCMSGP-CPFGEVQLQ- 112
C++ + R + L++ SG + +F C ++ ++K I C C LQ
Sbjct: 374 CFVCLESRTCSSNLTLTSGSKHKISFLCDDLTRLWM-NVEKTISCTDHRYCQRKSYSLQV 432
Query: 113 PSTSL-LPTLNRTFIWDVKAHKSIGLELQFSIPRLRQIGPGESCPDGVTHSISGRIDATV 171
PS L LP F W + K + +L+Q + C ++ ++ I +
Sbjct: 433 PSDILHLPVELHDFSWKLLVPKDRLSLVLVPAQKLQQHTHEKPCNTSFSYLVASAIPSQD 492
Query: 172 VRIGTFCSNGTVSRIKMQEGVKMALHL--PWFHPR-NVSGFSIANRSSIKRLCIIESVFE 228
+ G+FC G++ +I++++ + + L P F + G +++ K + +
Sbjct: 493 LYFGSFCPGGSIKQIQVKQNISVTLRTFAPSFQQEASRQGLTVSFIPYFKEEGVFTVTPD 552
Query: 229 GEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSF 266
+ L + N+ G P ++W VP A ++F
Sbjct: 553 TKSKVYLRTPNWDRGLPSLTSVSWNISVPRDQVACLTF 590
>gi|73623026 mannan-binding lectin serine protease 1 isoform 3 [Homo
sapiens]
Length = 380
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 235 LMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSN---CERKEERVE 282
+ S YP+ +P D +TW VP R + F++FNL + CE +VE
Sbjct: 31 IQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 81
>gi|21264359 mannan-binding lectin serine protease 1 isoform 2
precursor [Homo sapiens]
Length = 728
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 235 LMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSN---CERKEERVE 282
+ S YP+ +P D +TW VP R + F++FNL + CE +VE
Sbjct: 31 IQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 81
>gi|21264357 mannan-binding lectin serine protease 1 isoform 1
precursor [Homo sapiens]
Length = 699
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 235 LMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSN---CERKEERVE 282
+ S YP+ +P D +TW VP R + F++FNL + CE +VE
Sbjct: 31 IQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE 81
>gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo
sapiens]
Length = 775
Score = 33.1 bits (74), Expect = 0.37
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 229 GEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCE 275
G S TL S NYP+ +P + W+ V R + F +F++ + +
Sbjct: 78 GPESGTLTSINYPQTYPNSTVCEWEIRVKMGERVRIKFGDFDIEDSD 124
>gi|6912724 tolloid-like 2 [Homo sapiens]
Length = 1015
Score = 32.7 bits (73), Expect = 0.48
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 232 SATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL 271
+ T+ S +P+ +P ++ WQ V PA R S+ F F L
Sbjct: 628 NGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFEL 667
>gi|24308436 methionine-tRNA synthetase 2 precursor [Homo sapiens]
Length = 593
Score = 32.7 bits (73), Expect = 0.48
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 103 PCPFGEVQLQPSTSLL-PTLNRTFIWDVKAHKS 134
PCPF +L P T LL P L+++ W VKAH++
Sbjct: 561 PCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT 593
>gi|22547221 tolloid-like 1 [Homo sapiens]
Length = 1013
Score = 32.0 bits (71), Expect = 0.83
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 232 SATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCE 275
+ T+ + +P+ +P ++ WQ V P R SV F F L E
Sbjct: 626 NGTITTPGWPKEYPPNKNCVWQVVAPTQYRISVKFEFFELEGNE 669
>gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens]
Length = 3487
Score = 32.0 bits (71), Expect = 0.83
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 220 LCIIE---SVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFN 270
LCI + +V E EG ++S +P +P + +W+ +P A + FLNF+
Sbjct: 1963 LCIAQCGGTVEEMEG--VILSPGFPGNYPSNMDCSWKIALPVGFGAHIQFLNFS 2014
Score = 29.6 bits (65), Expect = 4.1
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 232 SATLMSANYPEGFPEDELMTWQFVV-PAHLRASVSFLNFNLSNCERKEERVEYYIPGSTT 290
S ++S NYPE +P + W+ V P ++ A V FN+ N E + + Y +
Sbjct: 1453 SGVILSPNYPEPYPPGKECDWKVTVSPDYVIALV----FNIFNLEPGYDFLHIYDGRDSL 1508
Query: 291 NPEVFKLEDKQ-PGNMAGNFN 310
+P + Q PG + + N
Sbjct: 1509 SPLIGSFYGSQLPGRIESSSN 1529
>gi|13899255 membrane frizzled-related protein [Homo sapiens]
Length = 579
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 234 TLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL-SNCERKEERVEYYIPGST 289
T + +Y + +P L TW VPA + F NF+L + E K + VE Y S+
Sbjct: 311 TFSTPSYLQQYPHQLLCTWHISVPAGHSIELQFHNFSLEAQDECKFDYVEVYETSSS 367
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 30.0 bits (66), Expect = 3.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 18 LGAARLPRGAEAFEIALPRESNITVLIKLGTPTLLAKPCYIVISKRHITMLSIKSGE 74
L A + R + + AL +ESN V + L TP+L PC + L++ SG+
Sbjct: 322 LSLAAMIRKFQKEKDALKKESNPKVPVTLSTPSLNKPPCAAAALGNDVPDLNLSSGD 378
>gi|126091152 cubilin [Homo sapiens]
Length = 3623
Score = 29.6 bits (65), Expect = 4.1
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 30/122 (24%)
Query: 152 GESCPDGVTHSISGRIDATVVRIGTFCSNGTVSRIKMQEGVKMALHLPWFHPRNVSGFSI 211
G C + + SI + VVR F ++G+V+ SGF +
Sbjct: 2408 GRYCGNTIPDSIDTSSNTAVVR---FVTDGSVT---------------------ASGFRL 2443
Query: 212 ANRSSIKRLCIIESVFEGEGS-ATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFN 270
SS++ E + +GS T S NYP P + W+ P R ++ F N
Sbjct: 2444 RFESSME-----ECGGDLQGSIGTFTSPNYPNPNPHGRICEWRITAPEGRRITLMFNNLR 2498
Query: 271 LS 272
L+
Sbjct: 2499 LA 2500
>gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens]
Length = 1156
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 136 GLELQFSIPRLRQIGPGESCPDGVTHS-ISGRIDATVVRIGTFCSNGTVSRIKMQEGVK 193
G EL SI +LR GPGE P TH+ ++G I AT CS S+ KM + ++
Sbjct: 793 GAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTI-ATPPVCCPHCSKQYSSKTKMVQHIR 850
>gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens]
Length = 1023
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 136 GLELQFSIPRLRQIGPGESCPDGVTHS-ISGRIDATVVRIGTFCSNGTVSRIKMQEGVK 193
G EL SI +LR GPGE P TH+ ++G I AT CS S+ KM + ++
Sbjct: 707 GAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTI-ATPPVCCPHCSKQYSSKTKMVQHIR 764
>gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens]
Length = 1160
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 136 GLELQFSIPRLRQIGPGESCPDGVTHS-ISGRIDATVVRIGTFCSNGTVSRIKMQEGVK 193
G EL SI +LR GPGE P TH+ ++G I AT CS S+ KM + ++
Sbjct: 797 GAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTI-ATPPVCCPHCSKQYSSKTKMVQHIR 854
>gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens]
Length = 1061
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 136 GLELQFSIPRLRQIGPGESCPDGVTHS-ISGRIDATVVRIGTFCSNGTVSRIKMQEGVK 193
G EL SI +LR GPGE P TH+ ++G I AT CS S+ KM + ++
Sbjct: 711 GAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTI-ATPPVCCPHCSKQYSSKTKMVQHIR 768
>gi|4507399 transcription factor 4 isoform b [Homo sapiens]
Length = 667
Score = 29.3 bits (64), Expect = 5.4
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 229 GEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGS 288
G G S NY +G P D + + + +H S F+N S + K ER Y G
Sbjct: 60 GNGGHPSPSRNYGDGTPYDHMTSRD--LGSHDNLSPPFVN---SRIQSKTERGSYSSYG- 113
Query: 289 TTNPEVFKLEDKQPGNMAGNFNLSLQGCDQDAQSPGIL 326
+ N+ G SL G D D +PG L
Sbjct: 114 ------------RESNLQGCHQQSLLGGDMDMGNPGTL 139
>gi|145312267 transcription factor 4 isoform a [Homo sapiens]
Length = 671
Score = 29.3 bits (64), Expect = 5.4
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 229 GEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGS 288
G G S NY +G P D + + + +H S F+N S + K ER Y G
Sbjct: 60 GNGGHPSPSRNYGDGTPYDHMTSRD--LGSHDNLSPPFVN---SRIQSKTERGSYSSYG- 113
Query: 289 TTNPEVFKLEDKQPGNMAGNFNLSLQGCDQDAQSPGIL 326
+ N+ G SL G D D +PG L
Sbjct: 114 ------------RESNLQGCHQQSLLGGDMDMGNPGTL 139
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 29.3 bits (64), Expect = 5.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 235 LMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFN 270
++S +P +P + TW+ +P A + FLNF+
Sbjct: 1986 ILSPGFPGSYPNNLDCTWRISLPIGYGAHIQFLNFS 2021
>gi|148231605 ovochymase 2 [Homo sapiens]
Length = 564
Score = 28.9 bits (63), Expect = 7.0
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 198 LPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANYPEG----FPEDELMTWQ 253
LPW H +G R S + C + V L ++PE + + W
Sbjct: 291 LPWIHEHIQTG---NRRKSSRAWCSEQDVIVSGAEGKL---HFPESLHLYYESKQRCVWT 344
Query: 254 FVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKLEDKQPGNMAG 307
+VP + +SF + ++ +C Y+ ++ LED+ G G
Sbjct: 345 LLVPEEMHVLLSFSHLDVESCHHS------YL-------SMYSLEDRPIGKFCG 385
>gi|42476076 hypothetical protein LOC22878 [Homo sapiens]
Length = 1435
Score = 28.9 bits (63), Expect = 7.0
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 23/109 (21%)
Query: 189 QEGVKMALHLPWFHPRNVSGFSIANRSSIKRLCIIESVFEGEGSATLMSANYPEGFPEDE 248
QE +M L L +F P N++ +++R S+++L S S +YPE F
Sbjct: 1279 QEPPEMEL-LKFFRPENIT---VSSRPSVEQL----------SSLIKTSLHYPESFNHPF 1324
Query: 249 LMTWQFVVPAHLRASVSFLNFNLSNCERKEERVEYYIPGSTTNPEVFKL 297
+VP L LSNC + + V + TT+PE ++
Sbjct: 1325 HQKSLCLVPVTLL---------LSNCSKADVDVIVDLRHKTTSPEALEI 1364
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo
sapiens]
Length = 3667
Score = 28.5 bits (62), Expect = 9.1
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 234 TLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSN-----CERKEERVEYYIPGS 288
T++S +YPEG+ + W + R +SF +F+L + + + E I G+
Sbjct: 691 TVLSPDYPEGYGNNLNCIWTIISDPGSRIHLSFNDFDLESQFDFLAVKDGDSPESPILGT 750
Query: 289 ----------TTNPEVFKLEDKQPGNMAG-NFNLS 312
T+N + +LE + +M+G FN++
Sbjct: 751 FTGAEVPSHLTSNSHILRLEFQADHSMSGRGFNIT 785
>gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo
sapiens]
Length = 3538
Score = 28.5 bits (62), Expect = 9.1
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 234 TLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSN-----CERKEERVEYYIPGS 288
T++S +YPEG+ + W + R +SF +F+L + + + E I G+
Sbjct: 627 TVLSPDYPEGYGNNLNCIWTIISDPGSRIHLSFNDFDLESQFDFLAVKDGDSPESPILGT 686
Query: 289 ----------TTNPEVFKLEDKQPGNMAG-NFNLS 312
T+N + +LE + +M+G FN++
Sbjct: 687 FTGAEVPSHLTSNSHILRLEFQADHSMSGRGFNIT 721
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo
sapiens]
Length = 3707
Score = 28.5 bits (62), Expect = 9.1
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 234 TLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNLSN-----CERKEERVEYYIPGS 288
T++S +YPEG+ + W + R +SF +F+L + + + E I G+
Sbjct: 731 TVLSPDYPEGYGNNLNCIWTIISDPGSRIHLSFNDFDLESQFDFLAVKDGDSPESPILGT 790
Query: 289 ----------TTNPEVFKLEDKQPGNMAG-NFNLS 312
T+N + +LE + +M+G FN++
Sbjct: 791 FTGAEVPSHLTSNSHILRLEFQADHSMSGRGFNIT 825
>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
[Homo sapiens]
Length = 737
Score = 28.5 bits (62), Expect = 9.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 56 CYIVISKRHITMLSIKSGERIVFTFSCQSPENHFVIEIQKNID-CMSGPC 104
C + + T +S SG F+CQ PE +F ++ +D C S PC
Sbjct: 396 CILDPCRNGATCISSLSG------FTCQCPEGYFGSACEEKVDPCASSPC 439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,421,292
Number of Sequences: 37866
Number of extensions: 605646
Number of successful extensions: 1246
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 80
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.