Guide to the Human Genome
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Name: CDCP1 Sequence: fasta or formatted (343aa) NCBI GI: 30410803
Description:

CUB domain-containing protein 1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {836aa} CUB domain-containing protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         18           2
 C cysteine            2.9         10           1
 D aspartate           2.3          8           1
 E glutamate           7.0         24           2
 F phenylalanine       5.2         18           1
 G glycine             7.6         26           1
 H histidine           2.3          8           1
 I isoleucine          7.6         26           2
 K lysine              3.8         13           1
 L leucine             9.9         34           3
 M methionine          2.3          8           1
 N asparagine          5.0         17           1
 P proline             6.4         22           1
 Q glutamine           4.7         16           1
 R arginine            5.2         18           1
 S serine              9.3         32           2
 T threonine           4.7         16           2
 V valine              6.4         22           2
 W tryptophan          0.9          3           1
 Y tyrosine            1.2          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUB domain-containing protein 1 isoform 2 
CDCP1                 0.996   CUB domain-containing protein 1 isoform 1 
MASP1                 0.022   mannan-binding lectin serine protease 1 isoform 3 [H...
MASP1                 0.022   mannan-binding lectin serine protease 1 isoform 2 pr...
MASP1                 0.022   mannan-binding lectin serine protease 1 isoform 1 pr...
DCBLD2                0.012   discoidin, CUB and LCCL domain containing 2 
TLL2                  0.012   tolloid-like 2 
MARS2                 0.012   methionine-tRNA synthetase 2 precursor 
TLL1                  0.010   tolloid-like 1 
CSMD2                 0.010   CUB and Sushi multiple domains 2 
MFRP                  0.009   membrane frizzled-related protein 
UBN2                  0.007   ubinuclein 2 
CUBN                  0.007   cubilin 
PRDM10                0.007   PR domain containing 10 isoform 2 
PRDM10                0.007   PR domain containing 10 isoform 4 
PRDM10                0.007   PR domain containing 10 isoform 1 
PRDM10                0.007   PR domain containing 10 isoform 3 
TCF4                  0.006   transcription factor 4 isoform b 
TCF4                  0.006   transcription factor 4 isoform a 
CSMD1                 0.006   CUB and Sushi multiple domains 1 
OVCH2                 0.006   ovochymase 2 
KIAA1012              0.006   hypothetical protein LOC22878 
CSMD3                 0.004   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.004   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.004   CUB and Sushi multiple domains 3 isoform 1 
DNER                  0.004   delta-notch-like EGF repeat-containing transmembran...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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