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Search of human proteins with 122937323
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937323 transmembrane protein 202 [Homo sapiens]
(273 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937323 transmembrane protein 202 [Homo sapiens] 570 e-163
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 49 4e-06
gi|239754660 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|239749194 PREDICTED: hypothetical protein XP_002346946 [Homo ... 43 3e-04
gi|239743274 PREDICTED: hypothetical protein XP_002342783 [Homo ... 43 3e-04
gi|239508955 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|4503559 epithelial membrane protein 1 [Homo sapiens] 36 0.041
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 35 0.092
gi|157364934 fibrosin [Homo sapiens] 32 0.59
gi|171184433 outer dense fiber of sperm tails 4 [Homo sapiens] 31 1.3
gi|27312027 F-box only protein 16 [Homo sapiens] 31 1.3
gi|62000698 transmembrane protein 225 [Homo sapiens] 29 3.9
gi|22748765 claudin domain containing 2 [Homo sapiens] 29 3.9
gi|195947361 histidine acid phosphatase domain containing 2A iso... 29 5.0
gi|195947359 histidine acid phosphatase domain containing 2A iso... 29 5.0
gi|66932992 histidine acid phosphatase domain containing 2A isof... 29 5.0
gi|5031949 natural killer cell group 7 sequence [Homo sapiens] 29 5.0
gi|20270331 transmembrane protein 45B [Homo sapiens] 28 6.6
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 28 8.6
gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo sap... 28 8.6
gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo sap... 28 8.6
gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo sapi... 28 8.6
>gi|122937323 transmembrane protein 202 [Homo sapiens]
Length = 273
Score = 570 bits (1470), Expect = e-163
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MERREHLTLTFHSPEVPKIKGNRKYQRPTVPAKKHPSASMSCQRQQQLMDQAHIYIRTLC 60
MERREHLTLTFHSPEVPKIKGNRKYQRPTVPAKKHPSASMSCQRQQQLMDQAHIYIRTLC
Sbjct: 1 MERREHLTLTFHSPEVPKIKGNRKYQRPTVPAKKHPSASMSCQRQQQLMDQAHIYIRTLC 60
Query: 61 GSLCSFSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKPPYYLQYSRA 120
GSLCSFSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKPPYYLQYSRA
Sbjct: 61 GSLCSFSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKPPYYLQYSRA 120
Query: 121 FFLISVFTILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVHWH 180
FFLISVFTILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVHWH
Sbjct: 121 FFLISVFTILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVHWH 180
Query: 181 TRDAMESDLLWTYYLNWCSDIFYMFAGIISLLNYLTSRSPACDENVTVIPTERSRLGVGP 240
TRDAMESDLLWTYYLNWCSDIFYMFAGIISLLNYLTSRSPACDENVTVIPTERSRLGVGP
Sbjct: 181 TRDAMESDLLWTYYLNWCSDIFYMFAGIISLLNYLTSRSPACDENVTVIPTERSRLGVGP 240
Query: 241 VTTVSPAKDEGPRSEMESLSVREKNLPKSGLWW 273
VTTVSPAKDEGPRSEMESLSVREKNLPKSGLWW
Sbjct: 241 VTTVSPAKDEGPRSEMESLSVREKNLPKSGLWW 273
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 49.3 bits (116), Expect = 4e-06
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 61 GSLCSF--SLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKPPYYLQYS 118
G C++ ++L+++AM+ +W+Q+ + +G + GLW C C+ T Y+ +
Sbjct: 8 GLFCAWVGTILLVVAMATDHWMQYRL--SGSFAHQGLWRYCLGNKCYLQTDSIAYW-NAT 64
Query: 119 RAFFLISVFTILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVA-QV 177
RAF ++S ++G+ ++ + ++ F S ++L L ++ V
Sbjct: 65 RAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTV 124
Query: 178 HWHTRDAMESDLLWTYYLNWCSDIFYMFAGIISLLNY 214
+ R + W+Y L W + + FAGI + Y
Sbjct: 125 SFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYMCAY 161
>gi|239754660 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 42.7 bits (99), Expect = 3e-04
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 66 FSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKP-PYYLQYSRAFFLI 124
+ +++++++ P WV+ ++ ++GL+ C + CW P+P Y+ R F L
Sbjct: 25 YLIILVVSIFPF-WVRLTNEESHEVFFSGLFENCFNAKCWK--PRPLSIYIILGRVFLLS 81
Query: 125 SVFT--ILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVH--WH 180
+VF + T + F+S R T + ++ +SF + C L L L ++
Sbjct: 82 AVFLAFVTTFIMMPFASEFFPR---TWKQNFVLACISFFTGACAFLALVLHALEIKALRM 138
Query: 181 TRDAMESDLLWTYYLNWCSDIFYMFAGIISLLN-------YLTSRSPACDEN 225
++ +LW YY+ ++ AG I L+ +L S S + +E+
Sbjct: 139 KLGPLQFSVLWPYYVLGFGIFLFIVAGTICLIQEMVCPCWHLLSTSQSMEED 190
>gi|239749194 PREDICTED: hypothetical protein XP_002346946 [Homo
sapiens]
Length = 221
Score = 42.7 bits (99), Expect = 3e-04
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 66 FSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKP-PYYLQYSRAFFLI 124
+ +++++++ P WV+ ++ ++GL+ C + CW P+P Y+ R F L
Sbjct: 25 YLIILVVSIFPF-WVRLTNEESHEVFFSGLFENCFNAKCWK--PRPLSIYIILGRVFLLS 81
Query: 125 SVFT--ILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVH--WH 180
+VF + T + F+S R T + ++ +SF + C L L L ++
Sbjct: 82 AVFLAFVTTFIMMPFASEFFPR---TWKQNFVLACISFFTGACAFLALVLHALEIKALRM 138
Query: 181 TRDAMESDLLWTYYLNWCSDIFYMFAGIISLLN-------YLTSRSPACDEN 225
++ +LW YY+ ++ AG I L+ +L S S + +E+
Sbjct: 139 KLGPLQFSVLWPYYVLGFGIFLFIVAGTICLIQEMVCPCWHLLSTSQSMEED 190
>gi|239743274 PREDICTED: hypothetical protein XP_002342783 [Homo
sapiens]
Length = 221
Score = 42.7 bits (99), Expect = 3e-04
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 66 FSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKP-PYYLQYSRAFFLI 124
+ +++++++ P WV+ ++ ++GL+ C + CW P+P Y+ R F L
Sbjct: 25 YLIILVVSIFPF-WVRLTNEESHEVFFSGLFENCFNAKCWK--PRPLSIYIILGRVFLLS 81
Query: 125 SVFT--ILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVH--WH 180
+VF + T + F+S R T + ++ +SF + C L L L ++
Sbjct: 82 AVFLAFVTTFIMMPFASEFFPR---TWKQNFVLACISFFTGACAFLALVLHALEIKALRM 138
Query: 181 TRDAMESDLLWTYYLNWCSDIFYMFAGIISLLN-------YLTSRSPACDEN 225
++ +LW YY+ ++ AG I L+ +L S S + +E+
Sbjct: 139 KLGPLQFSVLWPYYVLGFGIFLFIVAGTICLIQEMVCPCWHLLSTSQSMEED 190
>gi|239508955 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 42.7 bits (99), Expect = 3e-04
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 66 FSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKP-PYYLQYSRAFFLI 124
+ +++++++ P WV+ ++ ++GL+ C + CW P+P Y+ R F L
Sbjct: 25 YLIILVVSIFPF-WVRLTNEESHEVFFSGLFENCFNAKCWK--PRPLSIYIILGRVFLLS 81
Query: 125 SVFT--ILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVH--WH 180
+VF + T + F+S R T + ++ +SF + C L L L ++
Sbjct: 82 AVFLAFVTTFIMMPFASEFFPR---TWKQNFVLACISFFTGACAFLALVLHALEIKALRM 138
Query: 181 TRDAMESDLLWTYYLNWCSDIFYMFAGIISLLN-------YLTSRSPACDEN 225
++ +LW YY+ ++ AG I L+ +L S S + +E+
Sbjct: 139 KLGPLQFSVLWPYYVLGFGIFLFIVAGTICLIQEMVCPCWHLLSTSQSMEED 190
>gi|4503559 epithelial membrane protein 1 [Homo sapiens]
Length = 157
Score = 35.8 bits (81), Expect = 0.041
Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 84 VIKNGLELYAGLWTLCNHELCW-SHTPKPPYYLQYSRAFFLISV-FTILTGLGWLFSSWI 141
++ N ++ GLW C + C S + L+ +AF ++S+ F ++ L ++F +
Sbjct: 29 LVSNTVDASVGLWKNCTNISCSDSLSYASEDALKTVQAFMILSIIFCVIALLVFVFQLFT 88
Query: 142 LNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVHWHTRDAMESDLLWTYYLNWCSDI 201
+ +G N + + C+L+ ++++ + H+ RD + ++Y L W
Sbjct: 89 MEKG----NRFFLSGATTLVCWLCILVGVSIYTS--HYANRDGTQYHHGYSYILGWICFC 142
Query: 202 FYMFAGIISLL 212
F G++ L+
Sbjct: 143 FSFIIGVLYLV 153
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 34.7 bits (78), Expect = 0.092
Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 46/198 (23%)
Query: 61 GSLCSF--SLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTP---KPP--- 112
G C++ ++L+++AM+ +W+Q+ + +G + GLW C C+ T +PP
Sbjct: 8 GLFCAWVGTILLVVAMATDHWMQYRL--SGSFAHQGLWRYCLGNKCYLQTDSIGEPPGQG 65
Query: 113 -----------------------------------YYLQYSRAFFLISVFTILTGLGWLF 137
Y +RAF ++S ++G+
Sbjct: 66 PGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISGIIMGI 125
Query: 138 SSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVA-QVHWHTRDAMESDLLWTYYLN 196
++ + ++ F S ++L L ++ V + R + W+Y L
Sbjct: 126 MAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSWSYILG 185
Query: 197 WCSDIFYMFAGIISLLNY 214
W + + FAGI + Y
Sbjct: 186 WVAVLMTFFAGIFYMCAY 203
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 32.0 bits (71), Expect = 0.59
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 229 IPTERSRLGVGPVTTVSPAKDEGPRSEMESLSVREK 264
+P R +L V P T + A +EGPR ES+ V+E+
Sbjct: 271 LPFSRPQLRVSPATPKARAGEEGPRPTKESVRVKEE 306
>gi|171184433 outer dense fiber of sperm tails 4 [Homo sapiens]
Length = 257
Score = 30.8 bits (68), Expect = 1.3
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 152 DLKVSMLSFISATCLLLCLNLFVAQVHWHTRDAMESDLLWTYYLNWCSDIFYMFAGIISL 211
DL+ ++FI +T +L +N+++ ++ + + + W+Y++ W I Y I+
Sbjct: 146 DLENGKVTFIFSTLMLFPINIWIFELERN----VSIPIGWSYFIGWLVLILYFTCAILCY 201
Query: 212 LNY 214
N+
Sbjct: 202 FNH 204
>gi|27312027 F-box only protein 16 [Homo sapiens]
Length = 292
Score = 30.8 bits (68), Expect = 1.3
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 27/127 (21%)
Query: 153 LKVSMLSFISATCLLLCLNLFVAQVHWHTRDAMESDLLW-------TYYLNWCSDIFYM- 204
L + + SF+ L C AQV WH ++ E D LW +Y+N+ F
Sbjct: 96 LSLYIFSFLDPRSLCRC-----AQVCWHWKNLAELDQLWMLKCLRFNWYINFSPTPFEQG 150
Query: 205 -----FAGIISLLNYLTSRSPACDENVTVIPTERSRLGVGPVTTVSPAKDEGPRSEM-ES 258
+ ++ L+ ++P D V V VT+ SP + + P S S
Sbjct: 151 IWKKHYIQMVKELHITKPKTPPKDGFVIA--------DVQLVTSNSPEEKQSPLSAFRSS 202
Query: 259 LSVREKN 265
S+R+KN
Sbjct: 203 SSLRKKN 209
>gi|62000698 transmembrane protein 225 [Homo sapiens]
Length = 225
Score = 29.3 bits (64), Expect = 3.9
Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 12/179 (6%)
Query: 53 HIYIRTLCGSLCSFS----LLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHT 108
H+ R++ G FS +LM++ ++ WV+ + ++ W +C L W
Sbjct: 3 HVSNRSIQGMNILFSSWAVVLMVMGITLDKWVELISEDERAKMNHSPWMMCCPAL-WPED 61
Query: 109 PKPPYYLQYSRAFFLISVFTILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLL 168
+ + + L + ++ G+ + + + L ++LSF S LL
Sbjct: 62 DLKVVRIMMTSSLGLSFLLNLILGMKFTYLI------PQNKYIQLFTTILSFFSGISLLW 115
Query: 169 CLNLFVAQV-HWHTRDAMESDLLWTYYLNWCSDIFYMFAGIISLLNYLTSRSPACDENV 226
L L+ ++ + + W Y + + F G++SLL S S N+
Sbjct: 116 ALILYHNKLKQGQSMHFSNYRITWIMYTAYLNVFFLSVCGVLSLLECKLSTSSCTCLNI 174
>gi|22748765 claudin domain containing 2 [Homo sapiens]
Length = 167
Score = 29.3 bits (64), Expect = 3.9
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 90 ELYAGLWTLCNHELCWSHTPKPPYYLQYSRAFFLISVFTI--LTGLGWLFSSWILNRGSM 147
E ++GLW CNH +C S + + + + V + + GL RG
Sbjct: 36 EGHSGLWQECNHGICSSIPCQTTLAVTVACMVLAVGVGVVGMVMGLRIRCDEGESLRGQT 95
Query: 148 TTNLDLKVSMLSFISATCLLLCLNLFVAQVHWHTRDAMESDLL--WTYYLNWCSDIFYMF 205
T SA L L L A + + ++A ++++ W+Y+ W + F +
Sbjct: 96 T-------------SAFLFLGGLLLLTALIGYTVKNAWKNNVFFSWSYFSGWLALPFSIL 142
Query: 206 AGIISLL 212
AG LL
Sbjct: 143 AGFCFLL 149
>gi|195947361 histidine acid phosphatase domain containing 2A isoform
2 [Homo sapiens]
Length = 1408
Score = 28.9 bits (63), Expect = 5.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 1 MERREHLTLTFHSPEVPKIKGNRKYQRPTVPAKKHPSASMSCQRQQQLMDQ 51
+E + L SP+VP ++ ++ Y+ + P ++ P S CQ + + Q
Sbjct: 1202 IEGEQELFEPNQSPQVPPMETSQPYEEVSQPCQEVPDISQPCQDISEALSQ 1252
>gi|195947359 histidine acid phosphatase domain containing 2A isoform
5 [Homo sapiens]
Length = 1433
Score = 28.9 bits (63), Expect = 5.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 1 MERREHLTLTFHSPEVPKIKGNRKYQRPTVPAKKHPSASMSCQRQQQLMDQ 51
+E + L SP+VP ++ ++ Y+ + P ++ P S CQ + + Q
Sbjct: 1227 IEGEQELFEPNQSPQVPPMETSQPYEEVSQPCQEVPDISQPCQDISEALSQ 1277
>gi|66932992 histidine acid phosphatase domain containing 2A isoform 2
[Homo sapiens]
Length = 1408
Score = 28.9 bits (63), Expect = 5.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 1 MERREHLTLTFHSPEVPKIKGNRKYQRPTVPAKKHPSASMSCQRQQQLMDQ 51
+E + L SP+VP ++ ++ Y+ + P ++ P S CQ + + Q
Sbjct: 1202 IEGEQELFEPNQSPQVPPMETSQPYEEVSQPCQEVPDISQPCQDISEALSQ 1252
>gi|5031949 natural killer cell group 7 sequence [Homo sapiens]
Length = 165
Score = 28.9 bits (63), Expect = 5.0
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 18/160 (11%)
Query: 59 LCGSLCSFS-----LLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKPPY 113
LC SL + LIA+S W F + ++GLW + ++
Sbjct: 3 LCRSLALLGGSLGLMFCLIALSTDFW--FEAVGPTHSAHSGLWPTGHGDIISG------- 53
Query: 114 YLQYSRAFFLISVFTILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLF 173
Y+ ++ F +++V L + +L S + L + +F +A +++ + ++
Sbjct: 54 YIHVTQTFSIMAVLWALVSVSFLVLSCFPSLFPPGHG-PLVSTTAAFAAAISMVVAMAVY 112
Query: 174 VAQVHWHT--RDAMESDLLWTYYLNWCSDIFYMFAGIISL 211
++ W +++ W++YL W S I + G +SL
Sbjct: 113 TSE-RWDQPPHPQIQTFFSWSFYLGWVSAILLLCTGALSL 151
>gi|20270331 transmembrane protein 45B [Homo sapiens]
Length = 275
Score = 28.5 bits (62), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 191 WTYYLNWCSDIFYMF---AGIISLLNYLTSRSP 220
W +NW Y+F +GI+ +L YL S P
Sbjct: 81 WIKLMNWQHSTMYLFFAVSGIVDMLTYLVSHVP 113
>gi|238624188 diffuse panbronchiolitis critical region 1 protein [Homo
sapiens]
Length = 1393
Score = 28.1 bits (61), Expect = 8.6
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 218 RSPACDENVTVIPTERSRLG---VGPVTTVSPAK--DEGPRSEMESLSVREKNLP 267
R+P +EN T PTE + G TT SPA+ + G R+ S EK +P
Sbjct: 986 RTPLANENTTTSPTESTEHGERTANEKTTPSPAEPTEHGERTP----SANEKTIP 1036
>gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 219 SPACDENVTVIPTERSRLGVGPVTTVSPAKDEGPRSEMESLSVREKNLPKS 269
SP E T+ P E + P T+ K++ P+S +++ +E N+PKS
Sbjct: 37 SPKSSEE-TIQPKEGD-IPKAPEETIQSKKEDLPKSSEKAIQPKESNIPKS 85
>gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo
sapiens]
Length = 553
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 219 SPACDENVTVIPTERSRLGVGPVTTVSPAKDEGPRSEMESLSVREKNLPKS 269
SP E T+ P E + P T+ K++ P+S +++ +E N+PKS
Sbjct: 104 SPKSSEE-TIQPKEGD-IPKAPEETIQSKKEDLPKSSEKAIQPKESNIPKS 152
>gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 219 SPACDENVTVIPTERSRLGVGPVTTVSPAKDEGPRSEMESLSVREKNLPKS 269
SP E T+ P E + P T+ K++ P+S +++ +E N+PKS
Sbjct: 37 SPKSSEE-TIQPKEGD-IPKAPEETIQSKKEDLPKSSEKAIQPKESNIPKS 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,164,858
Number of Sequences: 37866
Number of extensions: 489185
Number of successful extensions: 1578
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 64
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.