Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMEM225 Sequence: fasta or formatted (225aa) NCBI GI: 62000698
Description:

transmembrane protein 225

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          8           1
 C cysteine            3.6          8           2
 D aspartate           2.7          6           2
 E glutamate           4.4         10           1
 F phenylalanine       4.0          9           2
 G glycine             3.1          7           1
 H histidine           3.1          7           1
 I isoleucine          7.6         17           1
 K lysine              5.3         12           2
 L leucine            13.3         30           2
 M methionine          5.8         13           2
 N asparagine          5.8         13           1
 P proline             2.7          6           1
 Q glutamine           2.7          6           1
 R arginine            3.1          7           1
 S serine             11.1         25           2
 T threonine           5.8         13           2
 V valine              6.7         15           2
 W tryptophan          3.1          7           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 225 
LOC100294023          0.039   PREDICTED: hypothetical protein 
LOC100290508          0.039   PREDICTED: hypothetical protein XP_002346946 
LOC100289187          0.039   PREDICTED: hypothetical protein XP_002342783 
LOC100289187          0.039   PREDICTED: hypothetical protein 
CLDND2                0.028   claudin domain containing 2 
CACNG7                0.018   voltage-dependent calcium channel gamma-7 subunit [H...
CACNA1A               0.011   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.011   calcium channel, alpha 1A subunit isoform 3 
RGL1                  0.011   ral guanine nucleotide dissociation stimulator-like ...
TMEM202               0.009   transmembrane protein 202 
CACNG5                0.007   voltage-dependent calcium channel gamma-5 subunit is...
GPR45                 0.007   G protein-coupled receptor 45 
CACNA1B               0.007   calcium channel, voltage-dependent, N type, alpha 1B ...
LRRC4B                0.007   leucine rich repeat containing 4B 
SLC22A8               0.007   solute carrier family 22 member 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press