Search of human proteins with 28411948

Search of human proteins with 28411948

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28411948 oligodendrocyte transcription factor 3 [Homo
sapiens]
         (272 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens]     551   e-157
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo...   272   2e-73
gi|22748877 basic helix-loop-helix domain containing, class B, 5...   113   2e-25
gi|57529222 basic helix-loop-helix domain containing, class B, 4...   102   3e-22
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]     98   7e-21
gi|31077092 neurogenin 2 [Homo sapiens]                                72   4e-13
gi|68989258 neurogenin 3 [Homo sapiens]                                67   2e-11
gi|98986461 neurogenic differentiation 2 [Homo sapiens]                62   4e-10
gi|153792190 neurogenic differentiation 4 [Homo sapiens]               61   9e-10
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi...    60   2e-09
gi|121114306 neurogenic differentiation 1 [Homo sapiens]               59   3e-09
gi|38455396 neurogenin 1 [Homo sapiens]                                58   8e-09
gi|30039710 pancreas specific transcription factor, 1a [Homo sap...    55   5e-08
gi|27475985 neurogenic differentiation 6 [Homo sapiens]                54   1e-07
gi|21553337 atonal homolog 7 [Homo sapiens]                            51   1e-06
gi|226498192 atonal homolog 8 [Homo sapiens]                           49   5e-06
gi|4885075 atonal homolog 1 [Homo sapiens]                             49   5e-06
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9...    47   2e-05
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9...    47   2e-05
gi|116805332 musculin [Homo sapiens]                                   46   4e-05
gi|17981708 twist homolog 2 [Homo sapiens]                             45   5e-05
gi|4507741 twist [Homo sapiens]                                        44   2e-04
gi|148922889 scleraxis homolog B [Homo sapiens]                        44   2e-04
gi|186972126 scleraxis homolog A [Homo sapiens]                        44   2e-04
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]         43   3e-04
gi|38202237 transcription factor 21 [Homo sapiens]                     42   7e-04
gi|38202239 transcription factor 21 [Homo sapiens]                     42   7e-04
gi|23097242 nephew of atonal 3 [Homo sapiens]                          41   0.001
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo...    40   0.002
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho...    39   0.004

>gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens]
          Length = 272

 Score =  551 bits (1419), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAG 60
           MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAG
Sbjct: 1   MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAG 60

Query: 61  AKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRK 120
           AKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRK
Sbjct: 61  AKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRK 120

Query: 121 LSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHP 180
           LSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHP
Sbjct: 121 LSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHP 180

Query: 181 VHPILGGALSSGNASSPLSAASLPAIGTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPCP 240
           VHPILGGALSSGNASSPLSAASLPAIGTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPCP
Sbjct: 181 VHPILGGALSSGNASSPLSAASLPAIGTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPCP 240

Query: 241 CTICQMPPPPHLSALSTANMARLSAESKDLLK 272
           CTICQMPPPPHLSALSTANMARLSAESKDLLK
Sbjct: 241 CTICQMPPPPHLSALSTANMARLSAESKDLLK 272


>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
           sapiens]
          Length = 323

 Score =  272 bits (696), Expect = 2e-73
 Identities = 159/323 (49%), Positives = 203/323 (62%), Gaps = 55/323 (17%)

Query: 1   MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKM--------- 51
           M+SD+S VSSR SSP+ D+++L            +     SST  D   ++         
Sbjct: 1   MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG 60

Query: 52  -----PGESLSRAGAKA-----------AGESSKYKIKKQLSEQDLQQLRLKINGRERKR 95
                PG+ L  +G K+           A  SS  K KKQ++E +LQQLRLKIN RERKR
Sbjct: 61  SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR 120

Query: 96  MHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGH 155
           MHDLN+AMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLT+SLEEMKRLV EIYGGH
Sbjct: 121 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH 180

Query: 156 HSAFH---CGTVGHSA------GHPAHAANSV------HPVHPILGGALSSGNASSPLSA 200
           H+ FH   CG + HSA       HPA AA++       HP+ P    A ++  A++ +S+
Sbjct: 181 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS 240

Query: 201 AS-----LPAIGTIRPPHSLLKAPSTPPALQLG---------SGFQHWAGLPCPCTICQM 246
           AS     LP++G+IRPPH LLK+PS   A  LG          GFQHW G+PCPC++CQ+
Sbjct: 241 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV 300

Query: 247 PPP-PHLSALSTANMARLSAESK 268
           PPP  H+SA+   ++ RL++++K
Sbjct: 301 PPPHHHVSAMGAGSLPRLTSDAK 323


>gi|22748877 basic helix-loop-helix domain containing, class B, 5
           [Homo sapiens]
          Length = 381

 Score =  113 bits (283), Expect = 2e-25
 Identities = 74/153 (48%), Positives = 90/153 (58%), Gaps = 14/153 (9%)

Query: 53  GESLSRAGAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPY 112
           G      G+ ++  SS  K K+Q      + LRL IN RER+RMHDLN A+D LR V+PY
Sbjct: 218 GSGSGSGGSSSSSSSSSKKSKEQ------KALRLNINARERRRMHDLNDALDELRAVIPY 271

Query: 113 AHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPA 172
           AH PSVRKLSKIATLLLA+NYILM   +LEEM+RLV  +  G   A    ++  SA   A
Sbjct: 272 AHSPSVRKLSKIATLLLAKNYILMQAQALEEMRRLVAYLNQG--QAISAASLPSSAAAAA 329

Query: 173 HAANSVHPVHPILGGALSSGNASSPLSAASLPA 205
            AA     +HP LG    +  A  P SA   PA
Sbjct: 330 AAA----ALHPALGAYEQA--AGYPFSAGLPPA 356


>gi|57529222 basic helix-loop-helix domain containing, class B, 4
           [Homo sapiens]
          Length = 225

 Score =  102 bits (255), Expect = 3e-22
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query: 79  QDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLT 138
           ++ + LRL IN RER+RMHDLN A+DGLR V+PYAH PSVRKLSKIATLLLA+NYILM  
Sbjct: 96  REQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA 155

Query: 139 SSLEEMKRLVGEIYGG 154
            +L+EM+RLV  +  G
Sbjct: 156 QALDEMRRLVAFLNQG 171


>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
          Length = 271

 Score = 98.2 bits (243), Expect = 7e-21
 Identities = 79/177 (44%), Positives = 91/177 (51%), Gaps = 30/177 (16%)

Query: 78  EQDLQQLRLKINGRERKRMHDLNLAMDGLREV-MPYA----HGPSVRKLSKIATLLLARN 132
           E+  QQLR KIN RERKRM DLNLAMD LREV +PY+     G   RKLSKIATLLLARN
Sbjct: 100 EEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARN 159

Query: 133 YILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSG 192
           YIL+L SSL+E++R +GE  G              AG P  AA          G  L + 
Sbjct: 160 YILLLGSSLQELRRALGEGAGPAAPRLLL------AGLPLLAAAP--------GSVLLAP 205

Query: 193 NASSPLSAASLPAIGTIRPPHSLLKAPSTPPALQ--LGSGFQHWAGLPCPCTICQMP 247
            A  P  A        +RP   L  A   PP  Q  L  G     GL C C +C+ P
Sbjct: 206 GAVGPPDA--------LRPAKYLSLALDEPPCGQFALPGGGAGGPGL-CTCAVCKFP 253


>gi|31077092 neurogenin 2 [Homo sapiens]
          Length = 272

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 58/172 (33%), Positives = 73/172 (42%), Gaps = 35/172 (20%)

Query: 85  RLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEM 144
           RLK N RER RMH+LN A+D LREV+P    P   KL+KI TL  A NYI  LT +L   
Sbjct: 114 RLKANNRERNRMHNLNAALDALREVLPTF--PEDAKLTKIETLRFAHNYIWALTETL--- 168

Query: 145 KRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAASLP 204
                        A HCG  G   G P    +    + P    A  S +  SP  A++  
Sbjct: 169 -----------RLADHCG--GGGGGLPGALFSEAVLLSPGGASAALSSSGDSPSPASTWS 215

Query: 205 AIGTIRPPHSLLKAPSTP------PALQLGSGFQHWAGLPCPCTICQMPPPP 250
              +  P  S+    ++P      PA   GS   +W            PPPP
Sbjct: 216 CTNSPAPSSSVSSNSTSPYSCTLSPASPAGSDMDYW-----------QPPPP 256


>gi|68989258 neurogenin 3 [Homo sapiens]
          Length = 214

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 47/117 (40%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 65  GESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKI 124
           G  S+ K +  LS+Q   + R K N RER RMH+LN A+D LR V+P    P   KL+KI
Sbjct: 66  GGRSRPKSELALSKQRRSR-RKKANDRERNRMHNLNSALDALRGVLPTF--PDDAKLTKI 122

Query: 125 ATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPV 181
            TL  A NYI  LT +L         +Y     A HCG +G   G P    +   PV
Sbjct: 123 ETLRFAHNYIWALTQTLRIADH---SLYALEPPAPHCGELGSPGGSPGDWGSLYSPV 176


>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
          Length = 382

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 62  KAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKL 121
           K  G   +   K +L    L+  R K N RER RMHDLN A+D LR+V+P       +KL
Sbjct: 102 KKRGPKKRKMTKARLERSKLR--RQKANARERNRMHDLNAALDNLRKVVPCY--SKTQKL 157

Query: 122 SKIATLLLARNYILMLTSSLEEMKR 146
           SKI TL LA+NYI  L+  L   KR
Sbjct: 158 SKIETLRLAKNYIWALSEILRSGKR 182


>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
          Length = 331

 Score = 61.2 bits (147), Expect = 9e-10
 Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 15/104 (14%)

Query: 42  STQGDMMQKMPGESLSRAGAKAAGESSKYKIKKQLSEQDLQQLR---LKINGRERKRMHD 98
           S + +  ++  GE   R G K          KK++++  L++ R   +K N RER RMH 
Sbjct: 53  SIEEEEEEEEDGEKPKRRGPK----------KKKMTKARLERFRARRVKANARERTRMHG 102

Query: 99  LNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLE 142
           LN A+D LR VMP       +KLSKI TL LARNYI  L+  LE
Sbjct: 103 LNDALDNLRRVMPCY--SKTQKLSKIETLRLARNYIWALSEVLE 144


>gi|29126247 basic helix-loop-helix family, member a15 [Homo
           sapiens]
          Length = 189

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)

Query: 57  SRAGAKAAGESSKYKIKKQ----LSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPY 112
           +RA A+A GE  + +          +  +Q+ RL+ N RER+RMH LN A   LREV+P 
Sbjct: 46  ARAAARAPGEGRRRRPGPSGPGGRRDSSIQR-RLESNERERQRMHKLNNAFQALREVIP- 103

Query: 113 AHGPSVRKLSKIATLLLARNYILMLTSSLEEM 144
            H  + +KLSKI TL LA+NYI  LT+++  M
Sbjct: 104 -HVRADKKLSKIETLTLAKNYIKSLTATILTM 134


>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
          Length = 356

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 62  KAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKL 121
           K  G   K   K +L    L+  R+K N RER RMH LN A+D LR+V+P       +KL
Sbjct: 82  KRRGPKKKKMTKARLERFKLR--RMKANARERNRMHGLNAALDNLRKVVPCY--SKTQKL 137

Query: 122 SKIATLLLARNYILMLTSSLEEMK 145
           SKI TL LA+NYI  L+  L   K
Sbjct: 138 SKIETLRLAKNYIWALSEILRSGK 161


>gi|38455396 neurogenin 1 [Homo sapiens]
          Length = 237

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 62/197 (31%), Positives = 79/197 (40%), Gaps = 32/197 (16%)

Query: 35  SRLNSVSSTQGDMMQKMPGESLSRAGAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERK 94
           SR + V   Q D  ++      +R  ++A   S +            +  R+K N RER 
Sbjct: 56  SRASEVPGAQDDEQERRRRRGRTRVRSEALLHSLR------------RSRRVKANDRERN 103

Query: 95  RMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGG 154
           RMH+LN A+D LR V+P    P   KL+KI TL  A NYI  L  +L    +  G   GG
Sbjct: 104 RMHNLNAALDALRSVLP--SFPDDTKLTKIETLRFAYNYIWALAETLRLADQ--GLPGGG 159

Query: 155 HHSAF---HCGTVGHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAASLPAIG---T 208
                    C         PA  A S            S   A+SPLS  S PA     T
Sbjct: 160 ARERLLPPQCVPCLPGPPSPASDAESWG----------SGAAAASPLSDPSSPAASEDFT 209

Query: 209 IRPPHSLLKAPSTPPAL 225
            RP   +   PS P  L
Sbjct: 210 YRPGDPVFSFPSLPKDL 226


>gi|30039710 pancreas specific transcription factor, 1a [Homo
           sapiens]
          Length = 328

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 52  PGESL-SRAGAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVM 110
           PG  L   +GA AA    + +++   SE +LQQLR   N RER+RM  +N A +GLR  +
Sbjct: 134 PGARLRGLSGAAAAAARRRRRVR---SEAELQQLRQAANVRERRRMQSINDAFEGLRSHI 190

Query: 111 PYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGG 154
           P    P  ++LSK+ TL LA  YI  L+  ++    L G   GG
Sbjct: 191 PTL--PYEKRLSKVDTLRLAIGYINFLSELVQADLPLRGGGAGG 232


>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
          Length = 337

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)

Query: 73  KKQLSEQDLQQLRLK---INGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLL 129
           KK+ ++  L++++ +    N RER RMH LN A+D LR+V+P       +KLSKI TL L
Sbjct: 81  KKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCY--SKTQKLSKIETLRL 138

Query: 130 ARNYILMLTSSLEEMKR 146
           A+NYI  L+  L   KR
Sbjct: 139 AKNYIWALSEILRIGKR 155


>gi|21553337 atonal homolog 7 [Homo sapiens]
          Length = 152

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 85  RLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEM 144
           RL  N RER+RM  LN A D LR V+P       +KLSK  TL +A +YI+ LT  L E 
Sbjct: 42  RLAANARERRRMQGLNTAFDRLRRVVP--QWGQDKKLSKYETLQMALSYIMALTRILAEA 99

Query: 145 KRLVGE 150
           +R   E
Sbjct: 100 ERFGSE 105


>gi|226498192 atonal homolog 8 [Homo sapiens]
          Length = 321

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 35/141 (24%)

Query: 18  DEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAGAKAAGESSKYKIKKQLS 77
           +  Y    H  +++HQ+S  +          +K PGE        A   SS+ K  +Q  
Sbjct: 189 ESSYSSISHVIYNNHQDSSASP---------RKRPGE--------ATAASSEIKALQQTR 231

Query: 78  EQDLQQLRLKINGRERKRMHDLNLAMDGLREVMP-YAHGPSVRKLSKIATLLLARNYILM 136
                  RL  N RER R+H ++ A + LR+ +P Y++G   +KLSK+A L +A NYIL 
Sbjct: 232 -------RLLANARERTRVHTISAAFEALRKQVPCYSYG---QKLSKLAILRIACNYILS 281

Query: 137 LTSSLEEMKRLVGEIYGGHHS 157
           L        RL    Y   HS
Sbjct: 282 LA-------RLADLDYSADHS 295


>gi|4885075 atonal homolog 1 [Homo sapiens]
          Length = 354

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 82  QQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSL 141
           +Q RL  N RER+RMH LN A D LR V+P  +    +KLSK  TL +A+ YI  L+  L
Sbjct: 158 KQRRLAANARERRRMHGLNHAFDQLRNVIPSFNND--KKLSKYETLQMAQIYINALSELL 215

Query: 142 E 142
           +
Sbjct: 216 Q 216


>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 61/208 (29%), Positives = 84/208 (40%), Gaps = 29/208 (13%)

Query: 52  PGESLSRAGAKAA----GESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLR 107
           PG      GA  A    GE+ +   +++      +  R+  N RERKR+ D N A + LR
Sbjct: 30  PGGDSGVLGANGASCSRGEAEEPAGRRRARPVRSKARRMAANVRERKRILDYNEAFNALR 89

Query: 108 EVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGH---HSAFHCGTV 164
             +   H    ++LSKIATL  A + I  L+  L       G    GH   H     G  
Sbjct: 90  RAL--RHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPC--GHLECHGPAARGDT 145

Query: 165 GHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAASLPAIGTIRPPHSLLKAPSTPPA 224
           G +   P           P  G +L+  +A+ P S  S P   +  PPH+ L  PS   A
Sbjct: 146 GDTGASPP----------PPAGPSLARPDAARP-SVPSAPRCASC-PPHAPLARPS---A 190

Query: 225 LQLGSGFQHWAG---LPCPCTICQMPPP 249
           +  G G    +G     CP      PPP
Sbjct: 191 VAEGPGLAQASGGSWRRCPGASSAGPPP 218


>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 61/208 (29%), Positives = 84/208 (40%), Gaps = 29/208 (13%)

Query: 52  PGESLSRAGAKAA----GESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLR 107
           PG      GA  A    GE+ +   +++      +  R+  N RERKR+ D N A + LR
Sbjct: 30  PGGDSGVLGANGASCSRGEAEEPAGRRRARPVRSKARRMAANVRERKRILDYNEAFNALR 89

Query: 108 EVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGH---HSAFHCGTV 164
             +   H    ++LSKIATL  A + I  L+  L       G    GH   H     G  
Sbjct: 90  RAL--RHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPC--GHLECHGPAARGDT 145

Query: 165 GHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAASLPAIGTIRPPHSLLKAPSTPPA 224
           G +   P           P  G +L+  +A+ P S  S P   +  PPH+ L  PS   A
Sbjct: 146 GDTGASPP----------PPAGPSLARPDAARP-SVPSAPRCASC-PPHAPLARPS---A 190

Query: 225 LQLGSGFQHWAG---LPCPCTICQMPPP 249
           +  G G    +G     CP      PPP
Sbjct: 191 VAEGPGLAQASGGSWRRCPGASSAGPPP 218


>gi|116805332 musculin [Homo sapiens]
          Length = 206

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 15/141 (10%)

Query: 3   SDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAGAK 62
           S S + S+    PD +E             +   L +  S +G   ++        AG  
Sbjct: 40  SPSDNSSAEEEDPDGEE-------------ERCALGTAGSAEGCKRKRPRVAGGGGAGGS 86

Query: 63  AAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLS 122
           A G   K    K  + +  Q  R   N RER RM  L+ A   L+  +P+   P   KLS
Sbjct: 87  AGGGGKKPLPAKGSAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWV--PPDTKLS 144

Query: 123 KIATLLLARNYILMLTSSLEE 143
           K+ TL LA +YI  L   L+E
Sbjct: 145 KLDTLRLASSYIAHLRQLLQE 165


>gi|17981708 twist homolog 2 [Homo sapiens]
          Length = 160

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 57  SRAGAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGP 116
           S  G+   G+  K       S ++LQ  R+  N RER+R   LN A   LR+++P    P
Sbjct: 40  SEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTL--P 97

Query: 117 SVRKLSKIATLLLARNYILMLTSSLE 142
           S  KLSKI TL LA  YI  L   L+
Sbjct: 98  S-DKLSKIQTLKLAARYIDFLYQVLQ 122


>gi|4507741 twist [Homo sapiens]
          Length = 202

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 41/102 (40%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 41  SSTQGDMMQKMPGESLSRAGAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLN 100
           S  QG   +K  G      GA   G SS      Q S ++LQ  R+  N RER+R   LN
Sbjct: 68  SPAQGKRGKKSAGCG-GGGGAGGGGGSSSGGGSPQ-SYEELQTQRVMANVRERQRTQSLN 125

Query: 101 LAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLE 142
            A   LR+++P    PS  KLSKI TL LA  YI  L   L+
Sbjct: 126 EAFAALRKIIPTL--PS-DKLSKIQTLKLAARYIDFLYQVLQ 164


>gi|148922889 scleraxis homolog B [Homo sapiens]
          Length = 201

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 89  NGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLV 148
           N RER R + +N A   LR ++P    P+ RKLSKI TL LA +YI  L + L     L 
Sbjct: 81  NARERDRTNSVNTAFTALRTLIPTE--PADRKLSKIETLRLASSYISHLGNVL-----LA 133

Query: 149 GEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHP 183
           GE  G        G   HS     HAA +  P  P
Sbjct: 134 GEACGD-------GQPCHSGPAFFHAARAGSPPPP 161


>gi|186972126 scleraxis homolog A [Homo sapiens]
          Length = 201

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 89  NGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLV 148
           N RER R + +N A   LR ++P    P+ RKLSKI TL LA +YI  L + L     L 
Sbjct: 81  NARERDRTNSVNTAFTALRTLIPTE--PADRKLSKIETLRLASSYISHLGNVL-----LA 133

Query: 149 GEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHP 183
           GE  G        G   HS     HAA +  P  P
Sbjct: 134 GEACGD-------GQPCHSGPAFFHAARAGSPPPP 161


>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
          Length = 193

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 89  NGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLV 148
           N RER R+  +NL    LR+ +P  HG + +KLSK+ TL  A  YI  L   L E   + 
Sbjct: 56  NERERNRVKLVNLGFQALRQHVP--HGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVR 113

Query: 149 GEIYGG--HHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAASLPAI 206
             + GG    +       G     P  A+ S     P  GG+   G+  S  S+      
Sbjct: 114 NALAGGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAYSSDDSGCE 173

Query: 207 GTIRP 211
           G + P
Sbjct: 174 GALSP 178


>gi|38202237 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 60  GAKAAGESSKYKIKKQ----LSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHG 115
           G    G+  K   KK     +S++  Q  R   N RER RM  L+ A   L+  +P+   
Sbjct: 52  GRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWV-- 109

Query: 116 PSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIY 152
           P   KLSK+ TL LA +YI  L   L   K   G I+
Sbjct: 110 PPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146


>gi|38202239 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 60  GAKAAGESSKYKIKKQ----LSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHG 115
           G    G+  K   KK     +S++  Q  R   N RER RM  L+ A   L+  +P+   
Sbjct: 52  GRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWV-- 109

Query: 116 PSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIY 152
           P   KLSK+ TL LA +YI  L   L   K   G I+
Sbjct: 110 PPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146


>gi|23097242 nephew of atonal 3 [Homo sapiens]
          Length = 166

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 85  RLKINGRERKRMHDLNLAMDGLREVMP-YAHGPSVRKLSKIATLLLARNYILMLTSSLEE 143
           R   N RERKRM +LN A D LR  +P +A+    ++LS+I TL LA  YI  +T  LE 
Sbjct: 103 RQAANIRERKRMFNLNEAFDQLRRKVPTFAY---EKRLSRIETLRLAIVYISFMTELLES 159

Query: 144 MKR 146
            ++
Sbjct: 160 CEK 162


>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
           sapiens]
          Length = 199

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 85  RLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSL 141
           R   N RER R   +N A   LR ++P    P  RKLSKI TL LA +YI  L + L
Sbjct: 74  RQAANARERDRTQSVNTAFTALRTLIPTE--PVDRKLSKIETLRLASSYIAHLANVL 128


>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
           sapiens]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 29/144 (20%)

Query: 25  HHHRHHH--------------------HQE-----SRLNSVSSTQGDMMQKMPGESLSRA 59
           HHH HHH                    HQE     S L S +    D     P  + + A
Sbjct: 9   HHHHHHHPHPAHPMLHEPFLFGPASRCHQERPYFQSWLLSPADAAPDFPAGGPPPAAAAA 68

Query: 60  GAKAAGESSKYKIKKQLSEQDLQQLRLKING--RERKRMHDLNLAMDGLREVMPYAHGPS 117
                 ++   +   +L     +  R K +G  +ER+R   +N A   LRE +P    P+
Sbjct: 69  ATAYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELRECIPNV--PA 126

Query: 118 VRKLSKIATLLLARNYILMLTSSL 141
             KLSKI TL LA +YI  L   L
Sbjct: 127 DTKLSKIKTLRLATSYIAYLMDVL 150


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,336,382
Number of Sequences: 37866
Number of extensions: 551429
Number of successful extensions: 4050
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 3601
Number of HSP's gapped (non-prelim): 391
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.