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Search of human proteins with 27894321
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27894321 interleukin 1 receptor antagonist isoform 4 [Homo
sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27894321 interleukin 1 receptor antagonist isoform 4 [Homo sa... 296 3e-81
gi|27894319 interleukin 1 receptor antagonist isoform 1 precurso... 296 3e-81
gi|27894317 interleukin 1 receptor antagonist isoform 2 [Homo sa... 296 3e-81
gi|10835147 interleukin 1 receptor antagonist isoform 3 [Homo sa... 296 3e-81
gi|27894310 interleukin 1 family, member 5 [Homo sapiens] 123 5e-29
gi|6912432 interleukin 1 family, member 5 [Homo sapiens] 123 5e-29
gi|27894307 interleukin 1 family, member 10 [Homo sapiens] 97 6e-21
gi|27894304 interleukin 1 family, member 10 [Homo sapiens] 97 6e-21
gi|7657092 interleukin 1 family, member 6 (epsilon) [Homo sapiens] 71 4e-13
gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens] 67 4e-12
gi|9665234 interleukin 1 family, member 9 [Homo sapiens] 65 3e-11
gi|27894296 interleukin 1 family, member 7 isoform 2 [Homo sapiens] 57 5e-09
gi|20127524 interleukin 1 family, member 7 isoform 1 proprotein ... 57 5e-09
gi|27894302 interleukin 1 family, member 7 isoform 5 [Homo sapiens] 57 5e-09
gi|27894300 interleukin 1 family, member 7 isoform 4 [Homo sapiens] 57 5e-09
gi|27894298 interleukin 1 family, member 7 isoform 3 [Homo sapiens] 57 5e-09
gi|10835145 interleukin 1, beta proprotein [Homo sapiens] 53 1e-07
gi|194239668 SHC (Src homology 2 domain containing) transforming... 28 2.0
gi|194239664 SHC (Src homology 2 domain containing) transforming... 28 2.0
gi|194239662 SHC (Src homology 2 domain containing) transforming... 28 2.0
gi|32261324 SHC (Src homology 2 domain containing) transforming ... 28 2.0
gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo ... 28 2.6
gi|169790811 SHC (Src homology 2 domain containing) transforming... 28 2.6
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa... 27 5.8
>gi|27894321 interleukin 1 receptor antagonist isoform 4 [Homo
sapiens]
Length = 143
Score = 296 bits (759), Expect = 3e-81
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 60
MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC
Sbjct: 1 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 60
Query: 61 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 120
VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ
Sbjct: 61 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 120
Query: 121 PVSLTNMPDEGVMVTKFYFQEDE 143
PVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 121 PVSLTNMPDEGVMVTKFYFQEDE 143
>gi|27894319 interleukin 1 receptor antagonist isoform 1 precursor
[Homo sapiens]
Length = 177
Score = 296 bits (759), Expect = 3e-81
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 60
MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC
Sbjct: 35 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 94
Query: 61 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 120
VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ
Sbjct: 95 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 154
Query: 121 PVSLTNMPDEGVMVTKFYFQEDE 143
PVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 155 PVSLTNMPDEGVMVTKFYFQEDE 177
>gi|27894317 interleukin 1 receptor antagonist isoform 2 [Homo
sapiens]
Length = 180
Score = 296 bits (759), Expect = 3e-81
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 60
MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC
Sbjct: 38 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 97
Query: 61 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 120
VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ
Sbjct: 98 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 157
Query: 121 PVSLTNMPDEGVMVTKFYFQEDE 143
PVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 158 PVSLTNMPDEGVMVTKFYFQEDE 180
>gi|10835147 interleukin 1 receptor antagonist isoform 3 [Homo
sapiens]
Length = 159
Score = 296 bits (759), Expect = 3e-81
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 60
MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC
Sbjct: 17 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 76
Query: 61 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 120
VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ
Sbjct: 77 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 136
Query: 121 PVSLTNMPDEGVMVTKFYFQEDE 143
PVSLTNMPDEGVMVTKFYFQEDE
Sbjct: 137 PVSLTNMPDEGVMVTKFYFQEDE 159
>gi|27894310 interleukin 1 family, member 5 [Homo sapiens]
Length = 155
Score = 123 bits (309), Expect = 5e-29
Identities = 73/148 (49%), Positives = 86/148 (58%), Gaps = 13/148 (8%)
Query: 4 FRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP-------IEPHALFLGIHGGKM 56
FR+ D K YL NNQL+AG L V E+I VVP + P + LG+ GG
Sbjct: 9 FRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VILGVQGGSQ 66
Query: 57 CLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAM 116
CLSC G E L LE VNI +L K+ K F F R D G T+SFESAA PGWFLCT
Sbjct: 67 CLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVP 125
Query: 117 EADQPVSLTNMPDEG---VMVTKFYFQE 141
EADQPV LT +P+ G +T FYFQ+
Sbjct: 126 EADQPVRLTQLPENGGWNAPITDFYFQQ 153
>gi|6912432 interleukin 1 family, member 5 [Homo sapiens]
Length = 155
Score = 123 bits (309), Expect = 5e-29
Identities = 73/148 (49%), Positives = 86/148 (58%), Gaps = 13/148 (8%)
Query: 4 FRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP-------IEPHALFLGIHGGKM 56
FR+ D K YL NNQL+AG L V E+I VVP + P + LG+ GG
Sbjct: 9 FRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VILGVQGGSQ 66
Query: 57 CLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAM 116
CLSC G E L LE VNI +L K+ K F F R D G T+SFESAA PGWFLCT
Sbjct: 67 CLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVP 125
Query: 117 EADQPVSLTNMPDEG---VMVTKFYFQE 141
EADQPV LT +P+ G +T FYFQ+
Sbjct: 126 EADQPVRLTQLPENGGWNAPITDFYFQQ 153
>gi|27894307 interleukin 1 family, member 10 [Homo sapiens]
Length = 152
Score = 96.7 bits (239), Expect = 6e-21
Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 10 NQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHA-----LFLGIHGGKMCLSCVKSG 64
+QK Y R+ QL+ G N EKI ++P A +FLGI GG CL+CV++
Sbjct: 16 DQKALYTRDGQLLVGDPVADNC-CAEKICILPNRGLARTKVPIFLGIQGGSRCLACVETE 74
Query: 65 DETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSL 124
+ LQLE VNI +L + ++ RF F +S SG E+AA PGWFLC E QPV L
Sbjct: 75 EGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQL 134
Query: 125 TNMPDEGVMVTKFYFQE 141
T + TKFYF++
Sbjct: 135 TKESEPSAR-TKFYFEQ 150
>gi|27894304 interleukin 1 family, member 10 [Homo sapiens]
Length = 152
Score = 96.7 bits (239), Expect = 6e-21
Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 10 NQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHA-----LFLGIHGGKMCLSCVKSG 64
+QK Y R+ QL+ G N EKI ++P A +FLGI GG CL+CV++
Sbjct: 16 DQKALYTRDGQLLVGDPVADNC-CAEKICILPNRGLARTKVPIFLGIQGGSRCLACVETE 74
Query: 65 DETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSL 124
+ LQLE VNI +L + ++ RF F +S SG E+AA PGWFLC E QPV L
Sbjct: 75 EGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQL 134
Query: 125 TNMPDEGVMVTKFYFQE 141
T + TKFYF++
Sbjct: 135 TKESEPSAR-TKFYFEQ 150
>gi|7657092 interleukin 1 family, member 6 (epsilon) [Homo sapiens]
Length = 158
Score = 70.9 bits (172), Expect = 4e-13
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 6 IWDVNQKTFYLRNNQLVA----GYLQGPNVNLEEKIDVVPIEP---HALFLGIHGGKMCL 58
I D+N + + L++ L+A + + L V +E + ++LG++G +CL
Sbjct: 15 IQDINHRVWVLQDQTLIAVPRKDRMSPVTIALISCRHVETLEKDRGNPIYLGLNGLNLCL 74
Query: 59 SCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEA 118
C K GD+ LQL+ +I DL + K F F S SG ++FES A PGWF+ + E
Sbjct: 75 MCAKVGDQPTLQLKEKDIMDLYNQPEPVKSFLFYHSQSGRNSTFESVAFPGWFIAVSSEG 134
Query: 119 DQPVSLT 125
P+ LT
Sbjct: 135 GCPLILT 141
>gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens]
Length = 157
Score = 67.4 bits (163), Expect = 4e-12
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 47 LFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAA 106
++LGI G +CL C + + LQL+ NI DL +K K F F + G T+ F+S +
Sbjct: 62 VYLGIKGKDLCLFCAEIQGKPTLQLKEKNIMDLYVEKKAQKPFLFFHNKEGSTSVFQSVS 121
Query: 107 CPGWFLCTAMEADQPVSLTNMPDEGVM-VTKFYFQEDE 143
PGWF+ T+ + QP+ LT + G+ T FY E
Sbjct: 122 YPGWFIATSTTSGQPIFLTK--ERGITNNTNFYLDSVE 157
>gi|9665234 interleukin 1 family, member 9 [Homo sapiens]
Length = 169
Score = 64.7 bits (156), Expect = 3e-11
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 16/130 (12%)
Query: 8 DVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIE---PHAL--------FLGIHGGKM 56
D+NQ+ + L+ LVA P + + V I P AL +LGI +M
Sbjct: 29 DLNQQVWTLQGQNLVAV----PRSDSVTPVTVAVITCKYPEALEQGRGDPIYLGIQNPEM 84
Query: 57 CLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAM 116
CL C K G++ LQL+ I DL + K F F R+ +G T++ ES A P WF+ ++
Sbjct: 85 CLYCEKVGEQPTLQLKEQKIMDLYGQPEPVKPFLFYRAKTGRTSTLESVAFPDWFIASS- 143
Query: 117 EADQPVSLTN 126
+ DQP+ LT+
Sbjct: 144 KRDQPIILTS 153
>gi|27894296 interleukin 1 family, member 7 isoform 2 [Homo sapiens]
Length = 197
Score = 57.0 bits (136), Expect = 5e-09
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 47 LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 103
+ LG+ G+ CL C K ++ LQL+ + L+ ++ +R F F R+ G E
Sbjct: 88 ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 147
Query: 104 SAACPGWFLCTAMEADQPVSLTN 126
SAA PGWF+CT+ ++PV +T+
Sbjct: 148 SAAHPGWFICTSCNCNEPVGVTD 170
>gi|20127524 interleukin 1 family, member 7 isoform 1 proprotein
[Homo sapiens]
Length = 218
Score = 57.0 bits (136), Expect = 5e-09
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 47 LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 103
+ LG+ G+ CL C K ++ LQL+ + L+ ++ +R F F R+ G E
Sbjct: 109 ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 168
Query: 104 SAACPGWFLCTAMEADQPVSLTN 126
SAA PGWF+CT+ ++PV +T+
Sbjct: 169 SAAHPGWFICTSCNCNEPVGVTD 191
>gi|27894302 interleukin 1 family, member 7 isoform 5 [Homo sapiens]
Length = 192
Score = 57.0 bits (136), Expect = 5e-09
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 47 LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 103
+ LG+ G+ CL C K ++ LQL+ + L+ ++ +R F F R+ G E
Sbjct: 83 ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 142
Query: 104 SAACPGWFLCTAMEADQPVSLTN 126
SAA PGWF+CT+ ++PV +T+
Sbjct: 143 SAAHPGWFICTSCNCNEPVGVTD 165
>gi|27894300 interleukin 1 family, member 7 isoform 4 [Homo sapiens]
Length = 178
Score = 57.0 bits (136), Expect = 5e-09
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 47 LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 103
+ LG+ G+ CL C K ++ LQL+ + L+ ++ +R F F R+ G E
Sbjct: 69 ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 128
Query: 104 SAACPGWFLCTAMEADQPVSLTN 126
SAA PGWF+CT+ ++PV +T+
Sbjct: 129 SAAHPGWFICTSCNCNEPVGVTD 151
>gi|27894298 interleukin 1 family, member 7 isoform 3 [Homo sapiens]
Length = 157
Score = 57.0 bits (136), Expect = 5e-09
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 47 LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 103
+ LG+ G+ CL C K ++ LQL+ + L+ ++ +R F F R+ G E
Sbjct: 48 ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 107
Query: 104 SAACPGWFLCTAMEADQPVSLTN 126
SAA PGWF+CT+ ++PV +T+
Sbjct: 108 SAAHPGWFICTSCNCNEPVGVTD 130
>gi|10835145 interleukin 1, beta proprotein [Homo sapiens]
Length = 269
Score = 52.8 bits (125), Expect = 1e-07
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 34 EEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIR 93
EE D +P+ LG+ + LSCV D+ LQLE+V+ + + +K +KRF F +
Sbjct: 166 EESNDKIPVA-----LGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPK-KKMEKRFVFNK 219
Query: 94 SDSGPTTSFESAACPGWFLCTAMEADQPVSL 124
+ FESA P W++ T+ + PV L
Sbjct: 220 IEINNKLEFESAQFPNWYISTSQAENMPVFL 250
>gi|194239668 SHC (Src homology 2 domain containing) transforming
protein 1 isoform 4 [Homo sapiens]
Length = 473
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 103 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 136
ES PG ++ T +++ QP L + EGV+ TK
Sbjct: 402 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 435
>gi|194239664 SHC (Src homology 2 domain containing) transforming
protein 1 isoform 3 [Homo sapiens]
Length = 584
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 103 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 136
ES PG ++ T +++ QP L + EGV+ TK
Sbjct: 513 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 546
>gi|194239662 SHC (Src homology 2 domain containing) transforming
protein 1 isoform 1 [Homo sapiens]
Length = 583
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 103 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 136
ES PG ++ T +++ QP L + EGV+ TK
Sbjct: 512 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 545
>gi|32261324 SHC (Src homology 2 domain containing) transforming
protein 1 isoform 2 [Homo sapiens]
Length = 474
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 103 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 136
ES PG ++ T +++ QP L + EGV+ TK
Sbjct: 403 ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 436
>gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo
sapiens]
Length = 475
Score = 28.1 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 103 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 136
+S PG ++ T M A QP L + EGV+ TK
Sbjct: 404 DSVTNPGQYVLTGMHAGQPKHLLLVDPEGVVRTK 437
>gi|169790811 SHC (Src homology 2 domain containing) transforming
protein 2 [Homo sapiens]
Length = 582
Score = 28.1 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 103 ESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTK 136
+S PG ++ T M A QP L + EGV+ TK
Sbjct: 511 DSVTNPGQYVLTGMHAGQPKHLLLVDPEGVVRTK 544
>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
sapiens]
Length = 631
Score = 26.9 bits (58), Expect = 5.8
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 34 EEKIDVVPIEPHALF--LGIHGGKMCLSCVKSGDET 67
+EK ++P++ H L GK C+ CVK+ + T
Sbjct: 254 KEKRGIIPLDAHCCVEVLPDRDGKRCMFCVKTANRT 289
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,510,614
Number of Sequences: 37866
Number of extensions: 215036
Number of successful extensions: 462
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 24
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.