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Search of human proteins with 27777663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27777663 goosecoid [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27777663 goosecoid [Homo sapiens] 529 e-151
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 107 8e-24
gi|12707580 paired-like homeobox 2b [Homo sapiens] 95 7e-20
gi|34365783 visual system homeobox 2 [Homo sapiens] 92 4e-19
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 92 4e-19
gi|46249382 paired-like homeobox 2a [Homo sapiens] 90 2e-18
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 88 6e-18
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 86 2e-17
gi|4557489 cone-rod homeobox protein [Homo sapiens] 86 3e-17
gi|24497589 aristaless related homeobox [Homo sapiens] 86 4e-17
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 85 5e-17
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 85 5e-17
gi|4504367 HESX homeobox 1 [Homo sapiens] 85 7e-17
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 84 9e-17
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 84 1e-16
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 84 1e-16
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 84 1e-16
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 84 1e-16
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 84 1e-16
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 83 2e-16
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 83 2e-16
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 83 2e-16
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 82 4e-16
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 82 4e-16
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 82 5e-16
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 82 5e-16
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 82 5e-16
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 82 5e-16
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 82 5e-16
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 82 5e-16
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 529 bits (1363), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MPASMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPR 60
MPASMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPR
Sbjct: 1 MPASMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPR 60
Query: 61 PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY 120
PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY
Sbjct: 61 PVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGY 120
Query: 121 EGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQ 180
EGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQ
Sbjct: 121 EGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQ 180
Query: 181 ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKA 240
ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKA
Sbjct: 181 ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKA 240
Query: 241 SPEKREEEGKSDLDSDS 257
SPEKREEEGKSDLDSDS
Sbjct: 241 SPEKREEEGKSDLDSDS 257
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 107 bits (268), Expect = 8e-24
Identities = 76/194 (39%), Positives = 101/194 (52%), Gaps = 24/194 (12%)
Query: 46 ASGGASSDYGAFYPRPVA-------------PGGAGLPAAVSGSRLGYNNYFYGQLHVQA 92
A+GGA+S GA P P + P A P +G + G +A
Sbjct: 4 AAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPGA--PEA 61
Query: 93 APVGPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLL 152
AP CC G + C P P G G+ L P+ +++G + L
Sbjct: 62 APCACCCC-----CGPRAAPCGP-PEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALP 115
Query: 153 NQL---HCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFK 209
+ RR RRHRTIF++EQL+ALE LF + +YPDV TRE+LA ++ LREE+VEVWFK
Sbjct: 116 GAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFK 175
Query: 210 NRRAKWRRQKRSSS 223
NRRAKWR QKR+S+
Sbjct: 176 NRRAKWRHQKRASA 189
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 94.7 bits (234), Expect = 7e-20
Identities = 57/135 (42%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 123 PGSVLVSPV-PHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQE 181
PGS + + HQ PY V T+ LN+ R++RR RT FT QL+ LE +F E
Sbjct: 62 PGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEK--RKQRRIRTTFTSAQLKELERVFAE 119
Query: 182 TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKAS 241
T YPD+ TRE+LA K+ L E +V+VWF+NRRAK+R+Q+R+++ + A+ SS K S
Sbjct: 120 THYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAK---NGSSGKKS 176
Query: 242 PEKREEEGKSDLDSD 256
R++E K +D
Sbjct: 177 DSSRDDESKEAKSTD 191
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 92.0 bits (227), Expect = 4e-19
Identities = 44/79 (55%), Positives = 54/79 (68%)
Query: 152 LNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNR 211
LNQ R+KRRHRTIFT QLE LE F E YPDV RE LA K L E++++VWF+NR
Sbjct: 140 LNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNR 199
Query: 212 RAKWRRQKRSSSEESENAE 230
RAKWR++++ S AE
Sbjct: 200 RAKWRKREKCWGRSSVMAE 218
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 92.0 bits (227), Expect = 4e-19
Identities = 41/74 (55%), Positives = 60/74 (81%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR+RT FT +QLEALE +F +T YPDV TRE+LA K++L E +V+VWF+NRRAKWR+
Sbjct: 36 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRK 95
Query: 218 QKRSSSEESENAEK 231
+R +S++ A++
Sbjct: 96 TERGASDQEPGAKE 109
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 60 RPVAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVP-PLG 107
R V P G P+ + G+ L Y HV + GP C VP P+G
Sbjct: 146 RTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMG 194
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 89.7 bits (221), Expect = 2e-18
Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 21/157 (13%)
Query: 91 QAAPVGPACCGAVPP---LGAQQCSCVPTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRT 147
Q +P+ PA A PP LG+ C+ P S VP++ P +
Sbjct: 34 QYSPLRPAFPAAGPPCPALGSSNCALGALRDHQPAP----YSAVPYKFFPEPS------- 82
Query: 148 ELQLLNQLHCRRK-RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV 206
LH +RK RR RT FT QL+ LE +F ET YPD+ TRE+LA K+ L E +V+V
Sbjct: 83 ------GLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQV 136
Query: 207 WFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKASPE 243
WF+NRRAK+R+Q+R++S + K ++ S E
Sbjct: 137 WFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSE 173
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 88.2 bits (217), Expect = 6e-18
Identities = 43/85 (50%), Positives = 56/85 (65%)
Query: 146 RTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
R +L+ L R+KRRHRT+FT QLE LE F E YPDV RE LA K L E++++
Sbjct: 150 RNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQ 209
Query: 206 VWFKNRRAKWRRQKRSSSEESENAE 230
VWF+NRRAKWR++++ S AE
Sbjct: 210 VWFQNRRAKWRKREKRWGGSSVMAE 234
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 86.3 bits (212), Expect = 2e-17
Identities = 39/62 (62%), Positives = 49/62 (79%)
Query: 159 RKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQ 218
+KRRHRT FT QLE LE +FQ+T YPDV REQLA + L E +V+VWF+NRRAKWR++
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Query: 219 KR 220
+R
Sbjct: 191 ER 192
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 85.9 bits (211), Expect = 3e-17
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 18/125 (14%)
Query: 135 MLPYMNVG--------TLSRTELQLLNQL-----HCRRKRRHRTIFTDEQLEALENLFQE 181
M+ YMN G LS + L++Q R++RR RT FT QLE LE LF +
Sbjct: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK 60
Query: 182 TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKAS 241
T+YPDV RE++A K++L E +V+VWFKNRRAK R+Q++ ++ + +KA
Sbjct: 61 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQ-----PPGGQAKAR 115
Query: 242 PEKRE 246
P KR+
Sbjct: 116 PAKRK 120
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 85.5 bits (210), Expect = 4e-17
Identities = 37/67 (55%), Positives = 54/67 (80%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR+RT FT QLE LE FQ+T YPDV TRE+LA ++ L E +V+VWF+NRRAKWR+
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385
Query: 218 QKRSSSE 224
++++ ++
Sbjct: 386 REKAGAQ 392
Score = 30.8 bits (68), Expect = 1.2
Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 21/127 (16%)
Query: 4 SMFSIDNILAARPRCKDSVLPVAHSAAAPVVFPALHGDSLYGASGGASSDYGAFYPRP-- 61
S + ID+IL R CK +L A S AP+ A ++ G+ +S+ + A P
Sbjct: 25 SSYCIDSILGRRSPCKMRLLGAAQSLPAPLTSRADPEKAVQGSPKSSSAPFEAELHLPPK 84
Query: 62 ----VAPGGAGLPAAVSGSRLGYNNYFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTP 117
PGG L + + AA A A + P P
Sbjct: 85 LRRLYGPGGGRLLQGAAAA---------------AAAAAAAAAAAATATAGPRGEAPPPP 129
Query: 118 PGYEGPG 124
P PG
Sbjct: 130 PPTARPG 136
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 85.1 bits (209), Expect = 5e-17
Identities = 44/97 (45%), Positives = 63/97 (64%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT +QLEALE FQ+T YPDV RE+LA +L E +V+VWFKNRRAK+R+
Sbjct: 69 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRK 128
Query: 218 QKRSSSEESENAEKWNKTSSSKASPEKREEEGKSDLD 254
++RS +E +K + S + E + + D +
Sbjct: 129 KQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTE 165
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 85.1 bits (209), Expect = 5e-17
Identities = 44/97 (45%), Positives = 63/97 (64%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT +QLEALE FQ+T YPDV RE+LA +L E +V+VWFKNRRAK+R+
Sbjct: 64 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRK 123
Query: 218 QKRSSSEESENAEKWNKTSSSKASPEKREEEGKSDLD 254
++RS +E +K + S + E + + D +
Sbjct: 124 KQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTE 160
>gi|4504367 HESX homeobox 1 [Homo sapiens]
Length = 185
Score = 84.7 bits (208), Expect = 7e-17
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 111 CSCVPTPPGYEGPGSVLVSPVPHQMLP-YMNVGTLSRTELQLLNQLHCRRKRRHRTIFTD 169
C VP PP SV+ P+P + Y N + S L L +L R RR RT FT
Sbjct: 59 CLHVPNPPSGISFPSVVDHPMPEERASKYENYFSASE-RLSLKRELSWYRGRRPRTAFTQ 117
Query: 170 EQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSS 222
Q+E LEN+F+ YP + RE LA+K++L E+++++WF+NRRAK +R R S
Sbjct: 118 NQIEVLENVFRVNCYPGIDIREDLAQKLNLEEDRIQIWFQNRRAKLKRSHRES 170
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 84.3 bits (207), Expect = 9e-17
Identities = 37/62 (59%), Positives = 50/62 (80%)
Query: 159 RKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQ 218
RKRR RT FT QL+ LEN F E++YPDV RE+LA +++L E++V+VWF+NRRAKW+R
Sbjct: 138 RKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKRN 197
Query: 219 KR 220
+R
Sbjct: 198 QR 199
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 84.0 bits (206), Expect = 1e-16
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 148 ELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVW 207
E Q+ QL R+ +R+RT FT EQ+EALE F+ T YPDV RE+LA K+ L E +++VW
Sbjct: 199 EAQMRLQLK-RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 257
Query: 208 FKNRRAKWRRQK--RSSSEESENAEKWNKTSSS 238
F NRRAKWRR++ R+ ++ N SSS
Sbjct: 258 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSS 290
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 84.0 bits (206), Expect = 1e-16
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 148 ELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVW 207
E Q+ QL R+ +R+RT FT EQ+EALE F+ T YPDV RE+LA K+ L E +++VW
Sbjct: 213 EAQMRLQLK-RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 271
Query: 208 FKNRRAKWRRQK--RSSSEESENAEKWNKTSSS 238
F NRRAKWRR++ R+ ++ N SSS
Sbjct: 272 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSS 304
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 84.0 bits (206), Expect = 1e-16
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 148 ELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVW 207
E Q+ QL R+ +R+RT FT EQ+EALE F+ T YPDV RE+LA K+ L E +++VW
Sbjct: 199 EAQMRLQLK-RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 257
Query: 208 FKNRRAKWRRQK--RSSSEESENAEKWNKTSSS 238
F NRRAKWRR++ R+ ++ N SSS
Sbjct: 258 FSNRRAKWRREEKLRNQRRQASNTPSHIPISSS 290
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 84.0 bits (206), Expect = 1e-16
Identities = 38/62 (61%), Positives = 49/62 (79%)
Query: 159 RKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQ 218
+KRR+RT FT QLE LE +FQ+T YPDV REQLA + L E +V+VWF+NRRAKWR++
Sbjct: 213 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 272
Query: 219 KR 220
+R
Sbjct: 273 ER 274
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 84.0 bits (206), Expect = 1e-16
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
++ RR+RT FT QL LE F+ + YPDV +RE+LA KVHL E +V+VWF+NRRAKWRR
Sbjct: 25 KKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRR 84
Query: 218 QKRSSS 223
Q+R S
Sbjct: 85 QERLES 90
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 83.2 bits (204), Expect = 2e-16
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 16/133 (12%)
Query: 97 PACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPH--------QMLPYMNVGTLSRTE 148
PAC A P G++ P+PP P +P P+ + P + VG + E
Sbjct: 71 PACPKA-PEEGSE-----PSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATG-E 123
Query: 149 LQLLNQLHCRRK-RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVW 207
+L + ++K RR+RT FT QL LE F+++ YPDV +RE+LA KV+L E +V+VW
Sbjct: 124 AKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVW 183
Query: 208 FKNRRAKWRRQKR 220
F+NRRAKWRRQ++
Sbjct: 184 FQNRRAKWRRQEK 196
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 83.2 bits (204), Expect = 2e-16
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT QL+ LE LF +T+YPD+ RE++A K++L E +V+VWFKNRRAK R+
Sbjct: 36 RKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95
Query: 218 QKRSSSEESENAEKWNKTSSSKASPEKREEEGKS 251
Q++ +N + K +S A E E G S
Sbjct: 96 QQQQQQNGGQNKVRPAKKKTSPAR-EVSSESGTS 128
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 83.2 bits (204), Expect = 2e-16
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT QL+ LE LF +T+YPD+ RE++A K++L E +V+VWFKNRRAK R+
Sbjct: 44 RKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 103
Query: 218 QKRSSSEESENAEKWNKTSSSKASPEKREEEGKS 251
Q++ +N + K +S A E E G S
Sbjct: 104 QQQQQQNGGQNKVRPAKKKTSPAR-EVSSESGTS 136
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 82.4 bits (202), Expect = 4e-16
Identities = 64/198 (32%), Positives = 91/198 (45%), Gaps = 13/198 (6%)
Query: 24 PVAHSAAAPVVFPAL-HGDSLYGASGGASSDYGAFYPRPVAPGGAGLPAAVSGSRLGYNN 82
P AAAP + PA G L A + P P P L G L +
Sbjct: 28 PQGTPAAAPHLHPAPPRGPRL--TRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGH 85
Query: 83 YFYGQLHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPHQMLPYMNVG 142
++ G + A +P C P +GP ++ SP P ++ +
Sbjct: 86 FYEGPAEAEEKTSKAASFPQLP------LDCRGGPR--DGPSNLQGSPGPCLASLHLPLS 137
Query: 143 TLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREE 202
++L +KRR+RT F+ QLE LE +FQ+T YPDV REQLA + L E
Sbjct: 138 PGLPDSMELAKNKS--KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEA 195
Query: 203 KVEVWFKNRRAKWRRQKR 220
+V+VWF+NRRAKWR+++R
Sbjct: 196 RVQVWFQNRRAKWRKRER 213
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 82.4 bits (202), Expect = 4e-16
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT QL+ LE LF +T+YPD+ RE++A K++L E +V+VWFKNRRAK R+
Sbjct: 36 RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95
Query: 218 QKRSSSEESENAEKWNKTSSSKASPEKREEEGK 250
Q++S S K K SS E G+
Sbjct: 96 QQQSGSGTKSRPAK--KKSSPVRESSGSESSGQ 126
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 82.0 bits (201), Expect = 5e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT EQLE LE F+ T YPD+ TRE+LA++ L E +V+VWF NRRA+WR+
Sbjct: 216 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 275
Query: 218 Q 218
Q
Sbjct: 276 Q 276
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 82.0 bits (201), Expect = 5e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT EQLE LE F+ T YPD+ TRE+LA++ L E +V+VWF NRRA+WR+
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 218 Q 218
Q
Sbjct: 277 Q 277
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 82.0 bits (201), Expect = 5e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT EQLE LE F+ T YPD+ TRE+LA++ L E +V+VWF NRRA+WR+
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 218 Q 218
Q
Sbjct: 277 Q 277
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 82.0 bits (201), Expect = 5e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT EQLE LE F+ T YPD+ TRE+LA++ L E +V+VWF NRRA+WR+
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 218 Q 218
Q
Sbjct: 277 Q 277
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 82.0 bits (201), Expect = 5e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT EQLE LE F+ T YPD+ TRE+LA++ L E +V+VWF NRRA+WR+
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 218 Q 218
Q
Sbjct: 277 Q 277
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 82.0 bits (201), Expect = 5e-16
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 217
R++RR RT FT EQLE LE F+ T YPD+ TRE+LA++ L E +V+VWF NRRA+WR+
Sbjct: 217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 276
Query: 218 Q 218
Q
Sbjct: 277 Q 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,952,967
Number of Sequences: 37866
Number of extensions: 662782
Number of successful extensions: 3826
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 3138
Number of HSP's gapped (non-prelim): 801
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.