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Search of human proteins with 27734873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27734873 ring finger protein 152 [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27734873 ring finger protein 152 [Homo sapiens] 422 e-118
gi|22749455 ring finger protein 182 [Homo sapiens] 61 7e-10
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 58 5e-09
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 58 5e-09
gi|9506663 ring finger protein 186 [Homo sapiens] 57 1e-08
gi|153252110 ring finger protein 183 [Homo sapiens] 52 3e-07
gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens] 50 1e-06
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens] 49 3e-06
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens] 49 3e-06
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens] 49 3e-06
gi|30794216 tripartite motif-containing 56 [Homo sapiens] 49 4e-06
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 48 7e-06
gi|119220603 ring finger protein 208 [Homo sapiens] 46 2e-05
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 45 3e-05
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 45 3e-05
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens] 45 6e-05
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 44 9e-05
gi|40255283 NHL repeat containing 1 [Homo sapiens] 44 1e-04
gi|15208643 ADP-ribosylation factor domain protein 1 isoform gam... 43 2e-04
gi|15208641 ADP-ribosylation factor domain protein 1 isoform bet... 43 2e-04
gi|4502197 ADP-ribosylation factor domain protein 1 isoform alph... 43 2e-04
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 42 5e-04
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 42 5e-04
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 42 5e-04
gi|5730009 ret finger protein [Homo sapiens] 42 5e-04
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 40 0.002
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 40 0.002
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 39 0.002
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 39 0.002
gi|30023818 tripartite motif protein 50A [Homo sapiens] 39 0.003
>gi|27734873 ring finger protein 152 [Homo sapiens]
Length = 203
Score = 422 bits (1085), Expect = e-118
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL 60
METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL
Sbjct: 1 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL 60
Query: 61 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR 120
PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR
Sbjct: 61 PPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCR 120
Query: 121 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV 180
LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV
Sbjct: 121 LLPGSQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVKSSTWSGVCTVILVACVLV 180
Query: 181 FLLGIVLHNMSCISKRFTVISCG 203
FLLGIVLHNMSCISKRFTVISCG
Sbjct: 181 FLLGIVLHNMSCISKRFTVISCG 203
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 60.8 bits (146), Expect = 7e-10
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 10 LECQICFNYYS-PRRRPKLLDCKHTCCSVCLQQM----RTSQKDVRCPWCRGVTKLPPGF 64
LEC+IC+N Y+ +R+PK+L+C H C+ CL ++ + Q + CP+CR T LP
Sbjct: 18 LECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFETCLPDD- 76
Query: 65 SVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMGCRLLPG 124
VS LPDD +L + + LP N +L P + P L
Sbjct: 77 EVSSLPDDNNILVNLTCGGKGKKC-----LPENPTELLLTPKRLASLVSPSHTSSNCL-- 129
Query: 125 SQQKSVTVVTIPAEQQPLQGGAPQEAVEEEQDRRGVVK-SSTWS-GVCTVILVAC---VL 179
+T++ + E P P V S W+ CT +L VL
Sbjct: 130 ----VITIMEVQRESSPSLSSTPVVEFYRPASFDSVTTVSHNWTVWNCTSLLFQTSIRVL 185
Query: 180 VFLLGIV 186
V+LLG++
Sbjct: 186 VWLLGLL 192
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 58.2 bits (139), Expect = 5e-09
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 9 LLECQICFNYYSPRR-RPKLLDCKHTCCSVCLQQMRTSQ-KDVRCPWCRGVTKLPPGFSV 66
+LEC IC ++ + RPKLL C HT C CL+++ S VRCP+C +T++ S+
Sbjct: 17 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT---SL 73
Query: 67 SQLPDDPEVLAVIAIPHTSE 86
+QL D+ VL +I SE
Sbjct: 74 TQLTDNLTVLKIIDTAGLSE 93
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 58.2 bits (139), Expect = 5e-09
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 9 LLECQICFNYYSPRR-RPKLLDCKHTCCSVCLQQMRTSQ-KDVRCPWCRGVTKLPPGFSV 66
+LEC IC ++ + RPKLL C HT C CL+++ S VRCP+C +T++ S+
Sbjct: 17 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT---SL 73
Query: 67 SQLPDDPEVLAVIAIPHTSE 86
+QL D+ VL +I SE
Sbjct: 74 TQLTDNLTVLKIIDTAGLSE 93
>gi|9506663 ring finger protein 186 [Homo sapiens]
Length = 227
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKD---VRCPWCRGVTKLPPGFSV 66
LEC +C YS R PKLL C+H C++CL+ + Q + + CP CR VT +P G +
Sbjct: 38 LECLVCREPYSCPRLPKLLACQHAFCAICLKLLLCVQDNTWSITCPLCRKVTAVPGGL-I 96
Query: 67 SQLPDDPEVLAVIAIPHT 84
L D V+ +A P T
Sbjct: 97 CSLRDHEAVVGQLAQPCT 114
>gi|153252110 ring finger protein 183 [Homo sapiens]
Length = 192
Score = 52.4 bits (124), Expect = 3e-07
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 11 ECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRT---SQKDVRCPWCRGVTKLPPGFSV 66
EC +C+N ++ PK+LDC H+ C CL + +++ + CP CR T L G V
Sbjct: 12 ECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCRQPTVLASGQPV 71
Query: 67 SQLPDDPEVLAVIAI-PH 83
+ LP D +LA++ + PH
Sbjct: 72 TDLPTDTAMLALLRLEPH 89
>gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]
Length = 729
Score = 50.1 bits (118), Expect = 1e-06
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 1 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCR 55
M+ L+ LLEC +CF K+L C+HT C CLQ++ + K++RCP CR
Sbjct: 1 MDDLTLLDLLECPVCFEKLDVTA--KVLPCQHTFCKPCLQRVFKAHKELRCPECR 53
>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 48.9 bits (115), Expect = 3e-06
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 8 SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ-------KDVRCPWCRGVTK 59
S LEC ICF+ Y + PK L C H C CL ++ +Q + V CP+CR T
Sbjct: 47 SPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTA 106
Query: 60 LPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMG 118
+PP + + L H PV+++ C LP +E + D+G
Sbjct: 107 VPPAGAPALCTS--RQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVG 163
>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 48.9 bits (115), Expect = 3e-06
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 8 SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ-------KDVRCPWCRGVTK 59
S LEC ICF+ Y + PK L C H C CL ++ +Q + V CP+CR T
Sbjct: 47 SPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTA 106
Query: 60 LPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMG 118
+PP + + L H PV+++ C LP +E + D+G
Sbjct: 107 VPPAGAPALCTS--RQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVG 163
>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 48.9 bits (115), Expect = 3e-06
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 8 SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ-------KDVRCPWCRGVTK 59
S LEC ICF+ Y + PK L C H C CL ++ +Q + V CP+CR T
Sbjct: 47 SPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPFCRQPTA 106
Query: 60 LPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPISKERALLPGDMG 118
+PP + + L H PV+++ C LP +E + D+G
Sbjct: 107 VPPAGAPALCTS--RQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVDVG 163
>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
Length = 755
Score = 48.5 bits (114), Expect = 4e-06
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 1 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL 60
+E LS D L C+IC R PK L C HT C CL Q+ + VRCP CR +
Sbjct: 11 LEALSSD-FLACKICLEQL---RAPKTLPCLHTYCQDCLAQLADGGR-VRCPECRETVPV 65
Query: 61 PP 62
PP
Sbjct: 66 PP 67
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 47.8 bits (112), Expect = 7e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 1 METLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCR----- 55
M+ S LLEC +C K+L C+HT C CL+ + S+ ++RCP CR
Sbjct: 46 MDESSLLDLLECSVCLERLDTTA--KVLPCQHTFCRRCLESIVCSRHELRCPECRILVGC 103
Query: 56 GVTKLPPGFSVSQLPD 71
GV +LP + +L D
Sbjct: 104 GVDELPANILLVRLLD 119
>gi|119220603 ring finger protein 208 [Homo sapiens]
Length = 261
Score = 45.8 bits (107), Expect = 2e-05
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 10 LECQICFNYYS-PRRRPKLLDCKHTCCSVCLQQMRTS---QKDVRCPWCRGVTKLPPGFS 65
LEC C + Y+ +RRP++L C H+ C CLQ + S K + CP CR T L +
Sbjct: 141 LECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKYKFISCPTCRRETVLFTDYG 200
Query: 66 VSQLPDDPEVLA 77
++ L + +L+
Sbjct: 201 LAALAVNTSILS 212
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 45.4 bits (106), Expect = 3e-05
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 25/93 (26%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQK-DVRCPWCR--------GVTKL 60
L C IC + Y + PK+L C HT C CLQ +Q + CP CR GV+ L
Sbjct: 20 LVCSICLDRY---QCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQTSILPEQGVSAL 76
Query: 61 PPGFSVSQL-------------PDDPEVLAVIA 80
F +S L P+DP L+V+A
Sbjct: 77 QNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVA 109
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 45.4 bits (106), Expect = 3e-05
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 25/93 (26%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQK-DVRCPWCR--------GVTKL 60
L C IC + Y + PK+L C HT C CLQ +Q + CP CR GV+ L
Sbjct: 20 LVCSICLDRY---QCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQTSILPEQGVSAL 76
Query: 61 PPGFSVSQL-------------PDDPEVLAVIA 80
F +S L P+DP L+V+A
Sbjct: 77 QNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVA 109
>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
Length = 888
Score = 44.7 bits (104), Expect = 6e-05
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 9 LLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCR-----GVTKLPPG 63
LLEC +C K+L C+HT C CL + S+ ++RCP CR GV +LP
Sbjct: 9 LLECPVCLERLDASA--KVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGVEELPSN 66
Query: 64 FSVSQLPD 71
+ +L D
Sbjct: 67 ILLVRLLD 74
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 43.9 bits (102), Expect = 9e-05
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQQM----------RTSQKDVRCPWCRGVTK 59
L C IC++ + P++L C HT C CL+ + R + ++CP CR +T+
Sbjct: 8 LTCPICYSIFED---PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRSITE 64
Query: 60 LPPGFSVSQLPDDPEVLAVIAIPHTSEHTPVFIKLPSNGCYMLPLPI 106
+ P + LP + + A+I +H P + P + Y PL +
Sbjct: 65 IAP-TGIESLPVNFALRAIIEKYQQEDH-PDIVTCPEH--YRQPLNV 107
>gi|40255283 NHL repeat containing 1 [Homo sapiens]
Length = 395
Score = 43.5 bits (101), Expect = 1e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 8 SLLECQICFNYYSPR--RRPKLLDCKHTCCSVCLQQMRTSQK-DVRCPWCR 55
SLLEC++CF + R RRP+ L C H C C+ + + + CP+CR
Sbjct: 22 SLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALAHPRTLALECPFCR 72
>gi|15208643 ADP-ribosylation factor domain protein 1 isoform
gamma [Homo sapiens]
Length = 546
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 9 LLECQICFNYYSPR--RRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL 60
+LEC +C + +S + + P+LL C HT C CL ++ + +RCP+ R VT L
Sbjct: 28 VLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGRAIRCPFDRQVTDL 81
>gi|15208641 ADP-ribosylation factor domain protein 1 isoform beta
[Homo sapiens]
Length = 569
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 9 LLECQICFNYYSPR--RRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL 60
+LEC +C + +S + + P+LL C HT C CL ++ + +RCP+ R VT L
Sbjct: 28 VLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGRAIRCPFDRQVTDL 81
>gi|4502197 ADP-ribosylation factor domain protein 1 isoform alpha
[Homo sapiens]
Length = 574
Score = 43.1 bits (100), Expect = 2e-04
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 9 LLECQICFNYYSPR--RRPKLLDCKHTCCSVCLQQMRTSQKDVRCPWCRGVTKL 60
+LEC +C + +S + + P+LL C HT C CL ++ + +RCP+ R VT L
Sbjct: 28 VLECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGRAIRCPFDRQVTDL 81
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.6 bits (96), Expect = 5e-04
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 8 SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ----KDVRCPWCRGVTKLPP 62
S +EC IC + + + PK LDC H C CL ++ + V CP CR T+L P
Sbjct: 60 SPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAP 119
Query: 63 GFSVSQLPDDPEVL 76
+ LP +L
Sbjct: 120 RRGLPALPTQSGLL 133
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.6 bits (96), Expect = 5e-04
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 8 SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ----KDVRCPWCRGVTKLPP 62
S +EC IC + + + PK LDC H C CL ++ + V CP CR T+L P
Sbjct: 60 SPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAP 119
Query: 63 GFSVSQLPDDPEVL 76
+ LP +L
Sbjct: 120 RRGLPALPTQSGLL 133
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 41.6 bits (96), Expect = 5e-04
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 8 SLLECQICFNYYSPR-RRPKLLDCKHTCCSVCLQQMRTSQ----KDVRCPWCRGVTKLPP 62
S +EC IC + + + PK LDC H C CL ++ + V CP CR T+L P
Sbjct: 60 SPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGGNAVACPVCRAPTRLAP 119
Query: 63 GFSVSQLPDDPEVL 76
+ LP +L
Sbjct: 120 RRGLPALPTQSGLL 133
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 41.6 bits (96), Expect = 5e-04
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 2 ETLSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQ-MRTSQKDVRCPWCR 55
E L Q++ C +C Y++ P +LDC H C CL + T++ +V CP CR
Sbjct: 8 ECLQQETT--CPVCLQYFA---EPMMLDCGHNICCACLARCWGTAETNVSCPQCR 57
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo
sapiens]
Length = 744
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQQ-MRTSQKDVRCPWCRGVTKLP 61
L C IC Y + PK+L C HT C CLQ + + CP CR + LP
Sbjct: 21 LICSICLERY---KNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSILP 70
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo
sapiens]
Length = 771
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQQ-MRTSQKDVRCPWCRGVTKLP 61
L C IC Y + PK+L C HT C CLQ + + CP CR + LP
Sbjct: 48 LICSICLERY---KNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSILP 97
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 39.3 bits (90), Expect = 0.002
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQ-----QMRTSQKDVRCPWC 54
+EC +C P R P+LL C H C CL+ ++ S+ + CP C
Sbjct: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPEC 166
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 39.3 bits (90), Expect = 0.002
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 10 LECQICFNYYSPRRRPKLLDCKHTCCSVCLQ-----QMRTSQKDVRCPWC 54
+EC +C P R P+LL C H C CL+ ++ S+ + CP C
Sbjct: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPEC 166
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 4 LSQDSLLECQICFNYYSPRRRPKLLDCKHTCCSVCLQQMRTS-QKDVRCPWCR----GVT 58
L + L+C IC + + P +L C H+ C CL + ++RCP CR G +
Sbjct: 8 LELEDWLQCPICLEVF---KEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSS 64
Query: 59 KLP-----PGFSVSQLPDDPE 74
LP +LP DPE
Sbjct: 65 SLPNVSLARVIEALRLPGDPE 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,051,964
Number of Sequences: 37866
Number of extensions: 445814
Number of successful extensions: 1561
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 1462
Number of HSP's gapped (non-prelim): 187
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.