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Search of human proteins with 27475985
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27475985 neurogenic differentiation 6 [Homo sapiens]
(337 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 697 0.0
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 310 2e-84
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 301 4e-82
gi|153792190 neurogenic differentiation 4 [Homo sapiens] 242 3e-64
gi|68989258 neurogenin 3 [Homo sapiens] 87 2e-17
gi|38455396 neurogenin 1 [Homo sapiens] 85 8e-17
gi|31077092 neurogenin 2 [Homo sapiens] 82 9e-16
gi|4885075 atonal homolog 1 [Homo sapiens] 77 3e-14
gi|57529222 basic helix-loop-helix domain containing, class B, 4... 72 9e-13
gi|21553337 atonal homolog 7 [Homo sapiens] 71 2e-12
gi|23097242 nephew of atonal 3 [Homo sapiens] 70 2e-12
gi|226498192 atonal homolog 8 [Homo sapiens] 63 3e-10
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 62 6e-10
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 60 3e-09
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 59 6e-09
gi|38202237 transcription factor 21 [Homo sapiens] 59 8e-09
gi|38202239 transcription factor 21 [Homo sapiens] 59 8e-09
gi|17981708 twist homolog 2 [Homo sapiens] 57 2e-08
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 57 2e-08
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 57 2e-08
gi|148922889 scleraxis homolog B [Homo sapiens] 55 7e-08
gi|186972126 scleraxis homolog A [Homo sapiens] 55 7e-08
gi|116805332 musculin [Homo sapiens] 55 7e-08
gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens] 54 2e-07
gi|4507741 twist [Homo sapiens] 51 2e-06
gi|157739932 mesogenin 1 [Homo sapiens] 50 3e-06
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 49 5e-06
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 49 6e-06
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 49 6e-06
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 49 8e-06
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 697 bits (1800), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MLTLPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEE 60
MLTLPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEE
Sbjct: 1 MLTLPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEE 60
Query: 61 EEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKV 120
EEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKV
Sbjct: 61 EEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKV 120
Query: 121 VPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGC 180
VPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGC
Sbjct: 121 VPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGC 180
Query: 181 LQLNARSFLMGQGGEAAHHTRSPYSTFYPPYHSPELTTPPGHGTLDNSKSMKPYNYCSAY 240
LQLNARSFLMGQGGEAAHHTRSPYSTFYPPYHSPELTTPPGHGTLDNSKSMKPYNYCSAY
Sbjct: 181 LQLNARSFLMGQGGEAAHHTRSPYSTFYPPYHSPELTTPPGHGTLDNSKSMKPYNYCSAY 240
Query: 241 ESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPL 300
ESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPL
Sbjct: 241 ESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPL 300
Query: 301 GQGAMFRLPTDSHFPYDLHLRSQSLTMQDELNAVFHN 337
GQGAMFRLPTDSHFPYDLHLRSQSLTMQDELNAVFHN
Sbjct: 301 GQGAMFRLPTDSHFPYDLHLRSQSLTMQDELNAVFHN 337
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 310 bits (793), Expect = 2e-84
Identities = 179/359 (49%), Positives = 232/359 (64%), Gaps = 26/359 (7%)
Query: 2 LTLPFDESVVM--PESQMCRKFSREC----EDQKQIKKPESFSKQIVLRGKSIKRAPGEE 55
+T + ES +M P+ Q ++ EC +++ + K E + + S++ EE
Sbjct: 1 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDDLEAMNAEEDSLRNGGEEE 60
Query: 56 TEKE--EEEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDA 113
E E EEEE+ EEED++ P+RRG +KKK TK RLER K RR +ANARERNRMHGLN A
Sbjct: 61 DEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAA 120
Query: 114 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPT 173
LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR GK PDL++FVQ LCKGLSQPT
Sbjct: 121 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPT 180
Query: 174 TNLVAGCLQLNARSFLMGQGGEAAHHTRSPYSTF--YP-PYHSPELTTPPGHGTLDNSK- 229
TNLVAGCLQLN R+FL Q + H + ++F +P Y SP L +PP +GT+D+S
Sbjct: 181 TNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPGLPSPP-YGTMDSSHV 239
Query: 230 ---SMKPYNYCSAYESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYN 286
P+ Y +A E F+ES +C SP F+GPLS PP++ NG FS K E + ++ KNY
Sbjct: 240 FHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLS-PPLSINGNFSFKHEPSAEFEKNYA 298
Query: 287 YGMHYCAVPPRGPLGQGAMF--------RLPTDSHFPYDLHLRSQSLTMQDELNAVFHN 337
+ MHY A G G++F +P D+ +D H + + M +LNA+FH+
Sbjct: 299 FTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERV-MSAQLNAIFHD 356
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 301 bits (772), Expect = 4e-82
Identities = 172/333 (51%), Positives = 218/333 (65%), Gaps = 30/333 (9%)
Query: 34 PESFSKQIVLRGKSIKRAPGEETEKEEE---EEDREEEDENGL-------PRRRGLRKKK 83
P +K + LRG+ A E ++E E EE+ EEE+E GL P++RG +K+K
Sbjct: 51 PARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRK 110
Query: 84 TTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYI 143
TK RLER K RRQ+ANARERNRMH LN ALDNLRKVVPCYSKTQKLSKIETLRLAKNYI
Sbjct: 111 MTKARLERSKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYI 170
Query: 144 WALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGCLQLNARSFLMGQGGEAA---HHT 200
WALSEILR GKRPDL+++VQ LCKGLSQPTTNLVAGCLQLN+R+FL QG + A H +
Sbjct: 171 WALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGS 230
Query: 201 RSPYSTFYPPYHSPELTTP--PGHGTLDN--SKSMKPYNYCSAYESFYES-----TSPEC 251
P++ PY L G L + +++ + YC+AYE+ Y + SP+
Sbjct: 231 GGPFAMHPYPYPCSRLAGAQCQAAGGLGGGAAHALRTHGYCAAYETLYAAAGGGGASPDY 290
Query: 252 ASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPLGQGAMF----- 306
S ++EGPLS PP+ NG FSLKQ+ + D+ K+Y+Y MHY A+P P G G +F
Sbjct: 291 NSSEYEGPLS-PPLCLNGNFSLKQDSSPDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAV 349
Query: 307 --RLPTDSHFPYDLHLRSQSLTMQDELNAVFHN 337
+ +++ YD+HL M +ELNA FHN
Sbjct: 350 RGGVHSENLLSYDMHLHHDRGPMYEELNAFFHN 382
>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
Length = 331
Score = 242 bits (618), Expect = 3e-64
Identities = 136/266 (51%), Positives = 177/266 (66%), Gaps = 8/266 (3%)
Query: 54 EETEKEEEEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDA 113
EE + EEEE+ EE+ E P+RRG +KKK TK RLER + RR +ANARER RMHGLNDA
Sbjct: 49 EEHDSIEEEEEEEEDGEK--PKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDA 106
Query: 114 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPT 173
LDNLR+V+PCYSKTQKLSKIETLRLA+NYIWALSE+L G+ P+ FV+ LCKGLSQPT
Sbjct: 107 LDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPT 166
Query: 174 TNLVAGCLQLNARSFLMGQGGEAAHHTRSPYSTFYPPYHSPELTTPPGHGTLDNSKSMKP 233
+NLVAGCLQL +S L+ + + + S S Y SP L +PP + +KP
Sbjct: 167 SNLVAGCLQLGPQSVLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKP 226
Query: 234 YNYCSAYESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCA 293
+ S ES + S P+C++P +EGPL+ PP++ +G FSLKQ+ + D K+Y++ HY
Sbjct: 227 QVFKSLGESSFGSHLPDCSTPPYEGPLT-PPLSISGNFSLKQDGSPDLEKSYSFMPHY-- 283
Query: 294 VPPRGPLGQGAMFRLPTDSHFP-YDL 318
P L G + P + P YD+
Sbjct: 284 --PSSSLSSGHVHSTPFQAGTPRYDV 307
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 87.4 bits (215), Expect = 2e-17
Identities = 52/107 (48%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 51 APGEETEKEEEEEDREEEDENGLPR----RRGLRKKKTTKLRLERVK-FRRQEANARERN 105
AP T + EE G PR RRG R + ++L L + + RR++AN RERN
Sbjct: 35 APPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERN 94
Query: 106 RMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRI 152
RMH LN ALD LR V+P + KL+KIETLR A NYIWAL++ LRI
Sbjct: 95 RMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRI 141
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 85.1 bits (209), Expect = 8e-17
Identities = 45/86 (52%), Positives = 57/86 (66%)
Query: 67 EEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSK 126
++DE RRRG + ++ L + RR +AN RERNRMH LN ALD LR V+P +
Sbjct: 65 QDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLPSFPD 124
Query: 127 TQKLSKIETLRLAKNYIWALSEILRI 152
KL+KIETLR A NYIWAL+E LR+
Sbjct: 125 DTKLTKIETLRFAYNYIWALAETLRL 150
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 81.6 bits (200), Expect = 9e-16
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 75 RRRGLRKKKTTKLRLERVK-FRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKI 133
R R + + T ++R+K RR +AN RERNRMH LN ALD LR+V+P + + KL+KI
Sbjct: 92 RARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKI 151
Query: 134 ETLRLAKNYIWALSEILRI 152
ETLR A NYIWAL+E LR+
Sbjct: 152 ETLRFAHNYIWALTETLRL 170
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 76.6 bits (187), Expect = 3e-14
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 45 GKSIKRAPGEETEKEE--EEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANAR 102
G S ++PG +E+ + + DE G R+R K+ ++ K RR ANAR
Sbjct: 112 GASSSKSPGPVKVREQLCKLKGGVVVDELGCSRQRAPSSKQVNGVQ----KQRRLAANAR 167
Query: 103 ERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 151
ER RMHGLN A D LR V+P ++ +KLSK ETL++A+ YI ALSE+L+
Sbjct: 168 ERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQ 216
>gi|57529222 basic helix-loop-helix domain containing, class B, 4
[Homo sapiens]
Length = 225
Score = 71.6 bits (174), Expect = 9e-13
Identities = 51/125 (40%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 50 RAPGEETEKEEEEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHG 109
RAP + E E+ E++ RRRG + R + R NARER RMH
Sbjct: 56 RAPAQAAESSGEQSGDEDDAFEQRRRRRGPGSAADGRRRPREQRSLRLSINARERRRMHD 115
Query: 110 LNDALDNLRKVVPC--YSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCK 167
LNDALD LR V+P +KLSKI TL LAKNYI ++ L +R L+ F+ N +
Sbjct: 116 LNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALDEMRR--LVAFL-NQGQ 172
Query: 168 GLSQP 172
GL+ P
Sbjct: 173 GLAAP 177
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 70.9 bits (172), Expect = 2e-12
Identities = 38/68 (55%), Positives = 47/68 (69%)
Query: 88 RLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALS 147
RLE RR ANARER RM GLN A D LR+VVP + + +KLSK ETL++A +YI AL+
Sbjct: 34 RLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALT 93
Query: 148 EILRIGKR 155
IL +R
Sbjct: 94 RILAEAER 101
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 70.5 bits (171), Expect = 2e-12
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 54 EETEKEEEEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDA 113
EE E E ++ D EEE+E R RG+ K + +RQ AN RER RM LN+A
Sbjct: 63 EEEECEVDQGDGEEEEEE--ERGRGVSLLGRPKRKRVITYAQRQAANIRERKRMFNLNEA 120
Query: 114 LDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
D LR+ VP ++ ++LS+IETLRLA YI ++E+L
Sbjct: 121 FDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELL 157
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 63.2 bits (152), Expect = 3e-10
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 68 EDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKT 127
+D + PR+R + + RR ANARER R+H ++ A + LRK VPCYS
Sbjct: 204 QDSSASPRKRPGEATAASSEIKALQQTRRLLANARERTRVHTISAAFEALRKQVPCYSYG 263
Query: 128 QKLSKIETLRLAKNYIWALSEI 149
QKLSK+ LR+A NYI +L+ +
Sbjct: 264 QKLSKLAILRIACNYILSLARL 285
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 62.4 bits (150), Expect = 6e-10
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
RR E+N RER RMH LN+A LR+V+P +KLSKIETL LAKNYI +L+
Sbjct: 76 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLT------- 128
Query: 155 RPDLLTFVQNLCKGLSQPTTNL 176
+LT + GL P L
Sbjct: 129 -ATILTMSSSRLPGLEGPGPKL 149
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 60.1 bits (144), Expect = 3e-09
Identities = 45/120 (37%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 93 KFRRQEANARERNRMHGLNDALDNLRKVVPC--YSKTQKLSKIETLRLAKNYIWALSEIL 150
K R NARER RMH LNDALD LR V+P +KLSKI TL LAKNYI ++ L
Sbjct: 241 KALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQAL 300
Query: 151 RIGKRPDLLTFVQNLCKGLSQPTTNLVAGCLQLNARSFLMGQGGEAAHHTRSPYSTFYPP 210
++ V L +G + +L + A + L G P+S PP
Sbjct: 301 E-----EMRRLVAYLNQGQAISAASLPSSAAAAAAAAALHPALGAYEQAAGYPFSAGLPP 355
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 58.9 bits (141), Expect = 6e-09
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
+RQ ANARER+R +N A LR ++P +KLSKIETLRLA +YI L+ +L +G
Sbjct: 73 QRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGD 132
Query: 155 RPD 157
D
Sbjct: 133 SAD 135
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 58.5 bits (140), Expect = 8e-09
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 35 ESFSKQIVLRGKSIKRAPGEETEKEEEEEDREEEDENGLPRRR----GLRKKKTTK---- 86
E + +L +K +E E + ENG P++ G R+K TK
Sbjct: 10 EDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPL 69
Query: 87 --LRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 144
+ E + +R ANARER RM L+ A L+ +P KLSK++TLRLA +YI
Sbjct: 70 SGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIA 129
Query: 145 ALSEIL 150
L +IL
Sbjct: 130 HLRQIL 135
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 58.5 bits (140), Expect = 8e-09
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 35 ESFSKQIVLRGKSIKRAPGEETEKEEEEEDREEEDENGLPRRR----GLRKKKTTK---- 86
E + +L +K +E E + ENG P++ G R+K TK
Sbjct: 10 EDLQEVEMLECDGLKMDSNKEFVTSNESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPL 69
Query: 87 --LRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 144
+ E + +R ANARER RM L+ A L+ +P KLSK++TLRLA +YI
Sbjct: 70 SGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIA 129
Query: 145 ALSEIL 150
L +IL
Sbjct: 130 HLRQIL 135
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 57.4 bits (137), Expect = 2e-08
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 45 GKSIKRAPGEETEKEEEEEDRE--------------EEDENGLPRRRGLRKKKTTKLRLE 90
G S +P + EEE +R+ ED + P +RG +K + E
Sbjct: 4 GSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRG-KKGSPSAQSFE 62
Query: 91 RVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
++ +R AN RER R LN+A LRK++P + KLSKI+TL+LA YI L ++L
Sbjct: 63 ELQSQRILANVRERQRTQSLNEAFAALRKIIPTL-PSDKLSKIQTLKLAARYIDFLYQVL 121
Query: 151 RIGKRPDLLT 160
+ + + +T
Sbjct: 122 QSDEMDNKMT 131
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 57.4 bits (137), Expect = 2e-08
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 80 RKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLA 139
R++ ++ L+++ RQ AN RER RM +NDA + LR +P ++LSK++TLRLA
Sbjct: 152 RRRVRSEAELQQL---RQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLA 208
Query: 140 KNYIWALSEILR 151
YI LSE+++
Sbjct: 209 IGYINFLSELVQ 220
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 57.0 bits (136), Expect = 2e-08
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 81 KKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCY--SKTQKLSKIETLRL 138
KK+ T+ L++++ + N+RER RMH LN A+D LR+V+P +KLSKI TL L
Sbjct: 98 KKQMTEPELQQLRLK---INSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLL 154
Query: 139 AKNYIWALSEILRIGKR 155
A+NYI L+ L KR
Sbjct: 155 ARNYILMLTNSLEEMKR 171
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 55.5 bits (132), Expect = 7e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
+R ANARER+R + +N A LR ++P +KLSKIETLRLA +YI L +L G+
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 55.5 bits (132), Expect = 7e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
+R ANARER+R + +N A LR ++P +KLSKIETLRLA +YI L +L G+
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 55.5 bits (132), Expect = 7e-08
Identities = 53/168 (31%), Positives = 70/168 (41%), Gaps = 33/168 (19%)
Query: 9 SVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLRGKSIKRA-PGEETEKEEEEEDREE 67
SV PE R RE P SK+ LRG A P + + EEE+ D EE
Sbjct: 5 SVSDPEEMELRGLQREY--------PVPASKRPPLRGVERSYASPSDNSSAEEEDPDGEE 56
Query: 68 E--------DENGLPRRR----------------GLRKKKTTKLRLERVKFRRQEANARE 103
E G R+R G + E + +R ANARE
Sbjct: 57 ERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSAAECKQSQRNAANARE 116
Query: 104 RNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 151
R RM L+ A L+ +P KLSK++TLRLA +YI L ++L+
Sbjct: 117 RARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQ 164
>gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens]
Length = 272
Score = 54.3 bits (129), Expect = 2e-07
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 81 KKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCY--SKTQKLSKIETLRL 138
KK+ ++ L++++ + N RER RMH LN A+D LR+V+P +KLSKI TL L
Sbjct: 73 KKQLSEQDLQQLRLK---INGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLL 129
Query: 139 AKNYIWALSEILRIGKR 155
A+NYI L+ L KR
Sbjct: 130 ARNYILMLTSSLEEMKR 146
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 90 ERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEI 149
E ++ +R AN RER R LN+A LRK++P + KLSKI+TL+LA YI L ++
Sbjct: 104 EELQTQRVMANVRERQRTQSLNEAFAALRKIIPTL-PSDKLSKIQTLKLAARYIDFLYQV 162
Query: 150 LR 151
L+
Sbjct: 163 LQ 164
>gi|157739932 mesogenin 1 [Homo sapiens]
Length = 193
Score = 50.1 bits (118), Expect = 3e-06
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 78 GLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVV-PCYS-KTQKLSKIET 135
G + +K TK+R+ RR++A+ RE+ RM L DAL LR + P YS + Q L+KI+T
Sbjct: 110 GPKAQKGTKVRMSVQ--RRRKASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQT 167
Query: 136 LRLAKNYIWALSEILRIGKRP 156
L+ YI L+++L G+ P
Sbjct: 168 LKYTIKYIGELTDLLNRGREP 188
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 49.3 bits (116), Expect = 5e-06
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 96 RQEANARERNRMHGLNDALDNLRKVVPCYSKT-------QKLSKIETLRLAKNYIWALSE 148
R++ N+RER RM LN A+D LR+V+ YS +KLSKI TL LA+NYI L
Sbjct: 107 RRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGS 166
Query: 149 ILR 151
L+
Sbjct: 167 SLQ 169
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 48.9 bits (115), Expect = 6e-06
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
RR AN +ER R +N A LR+ +P KLSKI+TLRLA +YI L ++L
Sbjct: 100 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLL 155
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 48.9 bits (115), Expect = 6e-06
Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 52 PGEETEKEEEEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLN 111
PGE K+ + REE RRR R++ T K R RER R+ N
Sbjct: 50 PGEPGRKDLQHLSREE-------RRR--RRRATAKYRTAHA--------TRERIRVEAFN 92
Query: 112 DALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRI 152
A LRK++P +KLSKIE LRLA YI L+ +L +
Sbjct: 93 LAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV 133
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 48.5 bits (114), Expect = 8e-06
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 151
RR N+RER R +N A LRK++P + +KLSK E LRLA YI L +LR
Sbjct: 151 RRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLR 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,289,277
Number of Sequences: 37866
Number of extensions: 801162
Number of successful extensions: 14282
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 8260
Number of HSP's gapped (non-prelim): 3708
length of query: 337
length of database: 18,247,518
effective HSP length: 103
effective length of query: 234
effective length of database: 14,347,320
effective search space: 3357272880
effective search space used: 3357272880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.