Search of human proteins with 27437049

Search of human proteins with 27437049

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27437049 colony stimulating factor 3 isoform b precursor
[Homo sapiens]
         (204 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27437049 colony stimulating factor 3 isoform b precursor [Hom...   409   e-115
gi|4503079 colony stimulating factor 3 isoform a precursor [Homo...   404   e-113
gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens]      384   e-107
gi|156231353 Niemann-Pick C1-like protein 1 isoform 2 [Homo sapi...    32   0.37 
gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapi...    32   0.37 
gi|7706702 interleukin 23, alpha subunit p19 precursor [Homo sap...    30   1.1  
gi|10834984 interleukin 6 precursor [Homo sapiens]                     30   1.1  
gi|153267448 enolase 3 [Homo sapiens]                                  30   1.1  
gi|153267427 enolase 3 [Homo sapiens]                                  30   1.1  
gi|213417919 protein kinase, interferon-inducible double strande...    29   2.4  
gi|213417911 protein kinase, interferon-inducible double strande...    29   2.4  
gi|4505581 protein kinase, interferon-inducible double stranded ...    29   2.4  
gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Hom...    29   3.2  
gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Hom...    29   3.2  
gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo...    29   3.2  
gi|5031905 MyoD family inhibitor [Homo sapiens]                        28   5.4  
gi|224458288 lipoxygenase homology domains 1 isoform 2 [Homo sap...    27   9.2  
gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1...    27   9.2  
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap...    27   9.2  
gi|224458290 lipoxygenase homology domains 1 isoform 3 [Homo sap...    27   9.2  
gi|221316624 dystonin isoform 4 [Homo sapiens]                         27   9.2  
gi|221316622 dystonin isoform 3 [Homo sapiens]                         27   9.2  
gi|221316618 dystonin isoform 2 [Homo sapiens]                         27   9.2  
gi|34577047 dystonin isoform 1 [Homo sapiens]                          27   9.2  
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]              27   9.2  
gi|145580592 nesprin-3 [Homo sapiens]                                  27   9.2  
gi|24308207 leucine rich repeat containing 47 [Homo sapiens]           27   9.2  

>gi|27437049 colony stimulating factor 3 isoform b precursor [Homo
           sapiens]
          Length = 204

 Score =  409 bits (1052), Expect = e-115
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60
           MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
Sbjct: 1   MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60

Query: 61  LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ 120
           LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ
Sbjct: 61  LQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQ 120

Query: 121 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG 180
           ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG
Sbjct: 121 ALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGG 180

Query: 181 VLVASHLQSFLEVSYRVLRHLAQP 204
           VLVASHLQSFLEVSYRVLRHLAQP
Sbjct: 181 VLVASHLQSFLEVSYRVLRHLAQP 204


>gi|4503079 colony stimulating factor 3 isoform a precursor [Homo
           sapiens]
          Length = 207

 Score =  404 bits (1038), Expect = e-113
 Identities = 204/207 (98%), Positives = 204/207 (98%), Gaps = 3/207 (1%)

Query: 1   MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60
           MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA
Sbjct: 1   MAGPATQSPMKLMALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAA 60

Query: 61  LQEKL---CATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG 117
           LQEKL   CATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG
Sbjct: 61  LQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG 120

Query: 118 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR 177
           LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR
Sbjct: 121 LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRR 180

Query: 178 AGGVLVASHLQSFLEVSYRVLRHLAQP 204
           AGGVLVASHLQSFLEVSYRVLRHLAQP
Sbjct: 181 AGGVLVASHLQSFLEVSYRVLRHLAQP 207


>gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens]
          Length = 200

 Score =  384 bits (986), Expect = e-107
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 14  ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCH 73
           ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCH
Sbjct: 10  ALQLLLWHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCH 69

Query: 74  PEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTL 133
           PEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTL
Sbjct: 70  PEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTL 129

Query: 134 DTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEV 193
           DTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEV
Sbjct: 130 DTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEV 189

Query: 194 SYRVLRHLAQP 204
           SYRVLRHLAQP
Sbjct: 190 SYRVLRHLAQP 200


>gi|156231353 Niemann-Pick C1-like protein 1 isoform 2 [Homo
           sapiens]
          Length = 1332

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 45  LKCLEQV--RKIQGDGAALQEKLCA-------TYKLCHPEELVLLGHSLGIPWAPLSSCP 95
           + CL     RKI GD   L +K+C        T   C  ++LV L  SL I  A L+ CP
Sbjct: 55  VSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSITKALLTRCP 114

Query: 96  S 96
           +
Sbjct: 115 A 115


>gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo
           sapiens]
          Length = 1359

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 45  LKCLEQV--RKIQGDGAALQEKLCA-------TYKLCHPEELVLLGHSLGIPWAPLSSCP 95
           + CL     RKI GD   L +K+C        T   C  ++LV L  SL I  A L+ CP
Sbjct: 55  VSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSITKALLTRCP 114

Query: 96  S 96
           +
Sbjct: 115 A 115


>gi|7706702 interleukin 23, alpha subunit p19 precursor [Homo
           sapiens]
          Length = 189

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 31/159 (19%)

Query: 61  LQEKLCATYKLCHPEELVLLGH-----------SLGIPWAPLSS-CPSQALQLAG--CLS 106
           L +KLC      HP    L+GH           +  +P       C  Q L+     CL 
Sbjct: 36  LSQKLCTLAWSAHP----LVGHMDLREEGDEETTNDVPHIQCGDGCDPQGLRDNSQFCLQ 91

Query: 107 QLHSGLFLYQGLLQA-LEGISPELGPTLDTLQLDVADFATTIWQQME----ELGMAPALQ 161
           ++H GL  Y+ LL + +    P L P     QL  +    +   Q E    E    P+L 
Sbjct: 92  RIHQGLIFYEKLLGSDIFTGEPSLLPDSPVGQLHASLLGLSQLLQPEGHHWETQQIPSLS 151

Query: 162 PTQGAMPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRH 200
           P+Q         +QR      +   LQ+F+ V+ RV  H
Sbjct: 152 PSQ--------PWQRLLLRFKILRSLQAFVAVAARVFAH 182


>gi|10834984 interleukin 6 precursor [Homo sapiens]
          Length = 212

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 49  EQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIP-WAPLSSCPSQALQLAGCLSQ 107
           +Q+R I    +AL+++ C    +C   +  L  ++L +P  A    C         CL +
Sbjct: 55  KQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVK 114

Query: 108 LHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAM 167
           + +GL  ++  L+ L+            +Q+        + ++ + L       PT  A 
Sbjct: 115 IITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNAS 174

Query: 168 PAFASAFQRR----AGGVLVASHLQSFLEVSYRVLRHL 201
                  Q +        L+    + FL+ S R LR +
Sbjct: 175 LLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 212


>gi|153267448 enolase 3 [Homo sapiens]
          Length = 434

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 111 GLFLYQGLLQALEGISPELGPTLDTLQLDVAD 142
           G +L +G+L+A+E I+  LGP L   +L VAD
Sbjct: 55  GRYLGKGVLKAVENINSTLGPALLQKKLSVAD 86


>gi|153267427 enolase 3 [Homo sapiens]
          Length = 434

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 111 GLFLYQGLLQALEGISPELGPTLDTLQLDVAD 142
           G +L +G+L+A+E I+  LGP L   +L VAD
Sbjct: 55  GRYLGKGVLKAVENINSTLGPALLQKKLSVAD 86


>gi|213417919 protein kinase, interferon-inducible double stranded
           RNA dependent activator isoform 3 [Homo sapiens]
          Length = 288

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 63  EKLCATYKLCHPEELVLL----GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG- 117
           EK  A +    PE  + L    GHSLG  W  L + P + + L      L   L      
Sbjct: 161 EKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINL------LKRSLLSIPNT 214

Query: 118 -LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAP 158
             +Q L  I+ E G  +  L +D    A   +Q + EL  +P
Sbjct: 215 DYIQLLSEIAKEQGFNITYLDIDELS-ANGQYQCLAELSTSP 255


>gi|213417911 protein kinase, interferon-inducible double stranded
           RNA dependent activator isoform 2 [Homo sapiens]
          Length = 302

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 63  EKLCATYKLCHPEELVLL----GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG- 117
           EK  A +    PE  + L    GHSLG  W  L + P + + L      L   L      
Sbjct: 175 EKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINL------LKRSLLSIPNT 228

Query: 118 -LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAP 158
             +Q L  I+ E G  +  L +D    A   +Q + EL  +P
Sbjct: 229 DYIQLLSEIAKEQGFNITYLDIDELS-ANGQYQCLAELSTSP 269


>gi|4505581 protein kinase, interferon-inducible double stranded RNA
           dependent activator isoform 1 [Homo sapiens]
          Length = 313

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 63  EKLCATYKLCHPEELVLL----GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQG- 117
           EK  A +    PE  + L    GHSLG  W  L + P + + L      L   L      
Sbjct: 186 EKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINL------LKRSLLSIPNT 239

Query: 118 -LLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAP 158
             +Q L  I+ E G  +  L +D    A   +Q + EL  +P
Sbjct: 240 DYIQLLSEIAKEQGFNITYLDIDELS-ANGQYQCLAELSTSP 280


>gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Homo
           sapiens]
          Length = 246

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 81  GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 138
           G  L I W    +CP++    A  L Q   GLF L  GL+Q       +L P L+TL L
Sbjct: 71  GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 128


>gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Homo
           sapiens]
          Length = 300

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 81  GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 138
           G  L I W    +CP++    A  L Q   GLF L  GL+Q       +L P L+TL L
Sbjct: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182


>gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo
           sapiens]
          Length = 300

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 81  GHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLF-LYQGLLQALEGISPELGPTLDTLQL 138
           G  L I W    +CP++    A  L Q   GLF L  GL+Q       +L P L+TL L
Sbjct: 125 GQGLDIYWRDNYTCPTEEEYKAMVL-QKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL 182


>gi|5031905 MyoD family inhibitor [Homo sapiens]
          Length = 246

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 123 EGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVL 182
           +G  P +   LD+  LDV   A T   Q   LG  P L P     P+     +R   G L
Sbjct: 63  QGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLL-PNDSGHPSELGGTRRAGNGAL 121


>gi|224458288 lipoxygenase homology domains 1 isoform 2 [Homo
           sapiens]
          Length = 1114

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 20  WHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLC 72
           WH +   V++       +S  ++F  +C   + K +GDG  +++  CA  K+C
Sbjct: 854 WHLSYVDVKD-------NSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKIC 899


>gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1
           [Homo sapiens]
          Length = 506

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 33  LGPASSLPQSFLLKCL--EQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAP 90
           LG   S+ +  ++KC   E++ K+QG     Q +     K    E+L +  H LG  WA 
Sbjct: 235 LGNVKSIREK-IIKCFSSEKLAKMQGWSEVFQSRQDVLEKYYVHEDLEIGAHHLGFLWAS 293

Query: 91  LSS 93
           +++
Sbjct: 294 VAN 296


>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sapiens]
          Length = 2211

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 20   WHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLC 72
            WH +   V++       +S  ++F  +C   + K +GDG  +++  CA  K+C
Sbjct: 1903 WHLSYVDVKD-------NSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKIC 1948


>gi|224458290 lipoxygenase homology domains 1 isoform 3 [Homo
           sapiens]
          Length = 512

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 20  WHSALWTVQEATPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLC 72
           WH +   V++       +S  ++F  +C   + K +GDG  +++  CA  K+C
Sbjct: 204 WHLSYVDVKD-------NSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKIC 249


>gi|221316624 dystonin isoform 4 [Homo sapiens]
          Length = 5526

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 45   LKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGC 104
            +K LE+ R        + + + A   +CHP+ +  + H + I  A      + A Q    
Sbjct: 4912 MKKLEEKRAELNKATTMGDTVLA---ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQR 4968

Query: 105  LSQLHSGLFLYQGLLQAL 122
            L+   +GL   Q LL+AL
Sbjct: 4969 LASALAGLIAKQELLEAL 4986


>gi|221316622 dystonin isoform 3 [Homo sapiens]
          Length = 5537

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 45   LKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGC 104
            +K LE+ R        + + + A   +CHP+ +  + H + I  A      + A Q    
Sbjct: 4923 MKKLEEKRAELNKATTMGDTVLA---ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQR 4979

Query: 105  LSQLHSGLFLYQGLLQAL 122
            L+   +GL   Q LL+AL
Sbjct: 4980 LASALAGLIAKQELLEAL 4997


>gi|221316618 dystonin isoform 2 [Homo sapiens]
          Length = 5675

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 45   LKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGC 104
            +K LE+ R        + + + A   +CHP+ +  + H + I  A      + A Q    
Sbjct: 5061 MKKLEEKRAELNKATTMGDTVLA---ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQR 5117

Query: 105  LSQLHSGLFLYQGLLQAL 122
            L+   +GL   Q LL+AL
Sbjct: 5118 LASALAGLIAKQELLEAL 5135


>gi|34577047 dystonin isoform 1 [Homo sapiens]
          Length = 5497

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 45   LKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGC 104
            +K LE+ R        + + + A   +CHP+ +  + H + I  A      + A Q    
Sbjct: 4883 MKKLEEKRAELNKATTMGDTVLA---ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQR 4939

Query: 105  LSQLHSGLFLYQGLLQAL 122
            L+   +GL   Q LL+AL
Sbjct: 4940 LASALAGLIAKQELLEAL 4957


>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
          Length = 5171

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 45   LKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGC 104
            +K LE+ R        + + + A   +CHP+ +  + H + I  A      + A Q    
Sbjct: 4557 MKKLEEKRAELNKATTMGDTVLA---ICHPDSITTIKHWITIIRARFEEVLAWAKQHQQR 4613

Query: 105  LSQLHSGLFLYQGLLQAL 122
            L+   +GL   Q LL+AL
Sbjct: 4614 LASALAGLIAKQELLEAL 4631


>gi|145580592 nesprin-3 [Homo sapiens]
          Length = 975

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 55  QGDGAALQEKLCATYKLC--HPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQL 108
           QG  AAL+ +L  T K+C   PE  V +   L +  A L+ CP    Q  G L++L
Sbjct: 34  QGPRAALEARLWETEKICQLEPEGRVRVDLVLRMAEALLACCPGD--QKPGILARL 87


>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
          Length = 583

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 39/122 (31%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 49  EQVRKIQGDGAALQEKLCATYKLCHPEELVL-LGHSLGIPWAPLSSCPSQALQLAGCLSQ 107
           E+ R++   G  L+E++ A      P    L L H L +        P   L  A  L Q
Sbjct: 19  ERRRELLLTGPGLEERVRAAGGQLPPRLFTLPLLHYLEVSGCGSLRAPGPGL--AQGLPQ 76

Query: 108 LHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAM 167
           LHS L L +  L    G+SPELGP      LD++  A              AL P QG  
Sbjct: 77  LHS-LVLRRNALGP--GLSPELGPLPALRVLDLSGNA------------LEALPPGQGLG 121

Query: 168 PA 169
           PA
Sbjct: 122 PA 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,261,151
Number of Sequences: 37866
Number of extensions: 364301
Number of successful extensions: 948
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 27
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.