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Search of human proteins with 26051235
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26051235 nucleoporin 133kDa [Homo sapiens]
(1156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26051235 nucleoporin 133kDa [Homo sapiens] 2291 0.0
gi|121114304 fms-related tyrosine kinase 3 [Homo sapiens] 35 0.54
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 34 0.70
gi|58293779 hypothetical protein LOC196541 [Homo sapiens] 34 0.92
gi|119874201 furry-like [Homo sapiens] 33 1.2
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 33 1.2
gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens] 33 1.2
gi|62422571 collapsin response mediator protein 1 isoform 1 [Hom... 33 1.2
gi|189011592 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 33 2.0
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 32 2.7
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 32 2.7
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 32 2.7
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 32 3.5
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 32 3.5
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 32 3.5
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 32 4.6
gi|239757446 PREDICTED: similar to mCG146261 [Homo sapiens] 32 4.6
gi|239751965 PREDICTED: similar to mCG146261 [Homo sapiens] 32 4.6
gi|239746447 PREDICTED: hypothetical protein XP_002344225 [Homo ... 32 4.6
gi|189571647 hypothetical protein LOC79684 [Homo sapiens] 32 4.6
gi|123701326 zinc finger protein 831 [Homo sapiens] 32 4.6
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 32 4.6
gi|62243769 signal transducing adaptor family member 2 isoform 2... 31 6.0
gi|62243734 signal transducing adaptor family member 2 isoform 1... 31 6.0
gi|219803769 trichoplein [Homo sapiens] 31 6.0
gi|14150056 trichoplein [Homo sapiens] 31 6.0
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens] 31 6.0
gi|124249396 coiled-coil domain containing 30 [Homo sapiens] 31 7.8
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 31 7.8
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 31 7.8
>gi|26051235 nucleoporin 133kDa [Homo sapiens]
Length = 1156
Score = 2291 bits (5936), Expect = 0.0
Identities = 1156/1156 (100%), Positives = 1156/1156 (100%)
Query: 1 MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSS 60
MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSS
Sbjct: 1 MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSS 60
Query: 61 RGTPTRMFPHHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCK 120
RGTPTRMFPHHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCK
Sbjct: 61 RGTPTRMFPHHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCK 120
Query: 121 EKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR 180
EKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR
Sbjct: 121 EKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATR 180
Query: 181 EGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPESSGKI 240
EGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPESSGKI
Sbjct: 181 EGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPESSGKI 240
Query: 241 HQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELD 300
HQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELD
Sbjct: 241 HQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELD 300
Query: 301 DSSEKHAYSWDINRALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWH 360
DSSEKHAYSWDINRALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWH
Sbjct: 301 DSSEKHAYSWDINRALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWH 360
Query: 361 SADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYNPPFQSEDLILCQLTVPNFSNQTAYLY 420
SADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYNPPFQSEDLILCQLTVPNFSNQTAYLY
Sbjct: 361 SADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYNPPFQSEDLILCQLTVPNFSNQTAYLY 420
Query: 421 NESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSITSRENVS 480
NESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSITSRENVS
Sbjct: 421 NESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSITSRENVS 480
Query: 481 ILAEDLEGSLASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFLQYCRKDLGHAQMV 540
ILAEDLEGSLASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFLQYCRKDLGHAQMV
Sbjct: 481 ILAEDLEGSLASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFLQYCRKDLGHAQMV 540
Query: 541 VDELFSSHSDLDSDSELDRAVTQISVDLMDDYPASDPRWAESVPEEAPGFSNTSLIILHQ 600
VDELFSSHSDLDSDSELDRAVTQISVDLMDDYPASDPRWAESVPEEAPGFSNTSLIILHQ
Sbjct: 541 VDELFSSHSDLDSDSELDRAVTQISVDLMDDYPASDPRWAESVPEEAPGFSNTSLIILHQ 600
Query: 601 LEDKMKAHSFLMDFIHQVGLFGRLGSFPVRGTPMATRLLLCEHAEKLSAAIVLKNHHSRL 660
LEDKMKAHSFLMDFIHQVGLFGRLGSFPVRGTPMATRLLLCEHAEKLSAAIVLKNHHSRL
Sbjct: 601 LEDKMKAHSFLMDFIHQVGLFGRLGSFPVRGTPMATRLLLCEHAEKLSAAIVLKNHHSRL 660
Query: 661 SDLVNTAILIALNKREYEIPSNLTPADVFFREVSQVDTICECLLEHEEQVLRDAPMDSIE 720
SDLVNTAILIALNKREYEIPSNLTPADVFFREVSQVDTICECLLEHEEQVLRDAPMDSIE
Sbjct: 661 SDLVNTAILIALNKREYEIPSNLTPADVFFREVSQVDTICECLLEHEEQVLRDAPMDSIE 720
Query: 721 WAEVVINVNNILKDMLQAASHYRQNRNSLYRREESLEKEPEYVPWTATSGPGGIRTVIIR 780
WAEVVINVNNILKDMLQAASHYRQNRNSLYRREESLEKEPEYVPWTATSGPGGIRTVIIR
Sbjct: 721 WAEVVINVNNILKDMLQAASHYRQNRNSLYRREESLEKEPEYVPWTATSGPGGIRTVIIR 780
Query: 781 QHEIVLKVAYPQADSNLRNIVTEQLVALIDCFLDGYVSQLKSVDKSSNRERYDNLEMEYL 840
QHEIVLKVAYPQADSNLRNIVTEQLVALIDCFLDGYVSQLKSVDKSSNRERYDNLEMEYL
Sbjct: 781 QHEIVLKVAYPQADSNLRNIVTEQLVALIDCFLDGYVSQLKSVDKSSNRERYDNLEMEYL 840
Query: 841 QKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDF 900
QKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDF
Sbjct: 841 QKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDF 900
Query: 901 LFRWYLEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANME 960
LFRWYLEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANME
Sbjct: 901 LFRWYLEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANME 960
Query: 961 TRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNL 1020
TRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNL
Sbjct: 961 TRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNL 1020
Query: 1021 SAMPVLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDLKLEILCKALQR 1080
SAMPVLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDLKLEILCKALQR
Sbjct: 1021 SAMPVLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDLKLEILCKALQR 1080
Query: 1081 DNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDLLQADQLGSLKSNPYF 1140
DNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDLLQADQLGSLKSNPYF
Sbjct: 1081 DNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDLLQADQLGSLKSNPYF 1140
Query: 1141 EFVLKANYEYYVQGQI 1156
EFVLKANYEYYVQGQI
Sbjct: 1141 EFVLKANYEYYVQGQI 1156
>gi|121114304 fms-related tyrosine kinase 3 [Homo sapiens]
Length = 993
Score = 34.7 bits (78), Expect = 0.54
Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 40/229 (17%)
Query: 318 ENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWHSADNPC----------- 366
E IT+ +W ++N + + V+ L++ + G ++ A++S C
Sbjct: 476 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 535
Query: 367 ------LIYYSLITIEDNGCQMSDAVTVEVT--QYNPPFQSEDLILCQLTVPNFSNQTAY 418
+ +Y+ I + C + V + +Y F+ E + Q+ S+ Y
Sbjct: 536 PFIQDNISFYATIGV----CLLFIVVLTLLICHKYKKQFRYESQL--QMVQVTGSSDNEY 589
Query: 419 LYNESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSITSREN 478
Y + Y K+ P+E + F VLG+GA G V + ++ +
Sbjct: 590 FYVDFREYEYDL---KWEFPRENLEFG----KVLGSGAFGKVMNATAYGISKTGVSIQVA 642
Query: 479 VSILAEDLEGSLASSVAGPNSESMIFETTTKNETIAQEDKIKLLKAAFL 527
V +L E + S E+++ E + + E+ + LL A L
Sbjct: 643 VKMLKEKADSS--------EREALMSELKMMTQLGSHENIVNLLGACTL 683
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 34.3 bits (77), Expect = 0.70
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 906 LEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYFA 965
+++ + KLL Q +L N A E + N++ LE A A G+++ +R
Sbjct: 966 MQETLKKKLLDQEAKLKKELEN--TALELSQKEKQFNAKMLEMAQANSAGISDAVSRLET 1023
Query: 966 KKKTLL-GLSKLAALASDFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNLSAMP 1024
+K + L+++ + + ++K+ + AE+ Q + E QL
Sbjct: 1024 NQKEQIESLTEVHRRELNDVISIWEKKLNQQAEEL-----------QEIHEIQLQEKEQE 1072
Query: 1025 VLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDLKLEILCKALQRDNWS 1084
V Q I L+ CE+ + K + L+ ++D +N+L+ ++ K+ ++ +
Sbjct: 1073 VAELKQKILLFGCEKE------EMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSLA 1126
Query: 1085 SSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDLLQADQ 1130
+ K ++ + + V L K LK+ L E L E+K L + D+
Sbjct: 1127 QDETK---LKAHLEKLEVD-LNKSLKENTFLQEQLVELKMLAEEDK 1168
>gi|58293779 hypothetical protein LOC196541 [Homo sapiens]
Length = 264
Score = 33.9 bits (76), Expect = 0.92
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 1051 ALDLLEYIDEE-EDININDLKLEILCKALQRDNWSSSDGKDDPIEVSKDSIFVKILQKLL 1109
A+ L +Y++E E++N D K+ + + +S + + LL
Sbjct: 95 AMALCQYLEEHAEELNFQDAKILEIGAGPGLVSIVASILGAQVTATDLPDVLGNLQYNLL 154
Query: 1110 KDGIQLSEYLPEVKDLLQADQLGS--LKSNPYFEFVLKANYEYY 1151
K+ +Q + +LPEVK+L+ + L KS Y+++VL ++ Y+
Sbjct: 155 KNTLQCTAHLPEVKELVWGEDLDKNFPKSAFYYDYVLASDVVYH 198
>gi|119874201 furry-like [Homo sapiens]
Length = 3013
Score = 33.5 bits (75), Expect = 1.2
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 752 REESLEKEPEYVPWTATSGPGGIRTVIIRQHEIVLKVAYPQADSNL-----RNIVTEQLV 806
R ES+E V + PG R +I H I+ K A + N+ R+I+ QLV
Sbjct: 926 RSESMEITESLVLGLGRTNPGAFRELIEELHPII-KEALERRPENMKRRRRRDILRVQLV 984
Query: 807 ALIDCFLD-GYVSQLKSVDKSSNRERYDNLEMEYLQKRSDLLSPLLSLGQYLWAASLAEK 865
+ + D G +S S + +N +EY+ DL LL + +L +
Sbjct: 985 RIFELLADAGVISHSASGGLDNETHFLNNTLLEYV----DLTRQLLEAENEKDSDTLKDI 1040
Query: 866 YCDFDILV 873
C F LV
Sbjct: 1041 RCHFSALV 1048
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 33.5 bits (75), Expect = 1.2
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 1 MFPAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLP-LGSAVSSPVLFSPVGRRSSLS 59
M A RTP S G P TP AS G S SP SP G S+ S
Sbjct: 424 MDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTAS 483
Query: 60 SRGTPTR 66
G+P+R
Sbjct: 484 PTGSPSR 490
Score = 33.1 bits (74), Expect = 1.6
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 3 PAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLP----------LGSAVSSPVLFSPV 52
P A RTP S G + P TP AS G P S +P SP
Sbjct: 336 PRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASPT 395
Query: 53 GRRSSLS-----SRGTPTRMFPHHSITE 75
G S+ S R +PT M SIT+
Sbjct: 396 GTPSTASLTRKPPRASPTGMLSRTSITK 423
Score = 32.7 bits (73), Expect = 2.0
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 3 PAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLP-LGSAVSSPVLFSPVGRRSSLSSR 61
P A TP S G + P T TAS G P S SP SP G S S
Sbjct: 435 PRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLT 494
Query: 62 GTPTR 66
TP+R
Sbjct: 495 RTPSR 499
>gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens]
Length = 4024
Score = 33.5 bits (75), Expect = 1.2
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 779 IRQHEIVLKVAYPQADSNLRNIVTEQLVALIDCFLDGYVSQLKSVDKSSNRERYDNLEME 838
IR+H K P +D+NL L+ LIDCF+D + ++K + + ++RE Y LE
Sbjct: 1797 IRKHT---KELSPTSDTNL----VRSLMNLIDCFMDDFADEVK-LKERNDRETYSLLEGI 1848
Query: 839 YL 840
+L
Sbjct: 1849 FL 1850
>gi|62422571 collapsin response mediator protein 1 isoform 1 [Homo
sapiens]
Length = 686
Score = 33.5 bits (75), Expect = 1.2
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 7 SPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSP 46
S RTP + R + GPG + TAS P GSAVSSP
Sbjct: 60 SARTPRSAGRPDAVGLPGPGGSEDTASDVSEPSGSAVSSP 99
>gi|189011592 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 12 isoform b [Homo sapiens]
Length = 422
Score = 32.7 bits (73), Expect = 2.0
Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 819 QLKSVDKSSNRERYDNLEMEYLQKRSDLLSPLLSLG-QYLWAASLAEKYCDFDILVQMCE 877
+LK ++ E +N + ++ L +G +Y + ++ Y D I +M E
Sbjct: 176 ELKEAHEAELSELENNYKAALKAEKLAAQEKLEEMGKEYKYLKNMFRTYQD-SIYDEMEE 234
Query: 878 QTDNQSRLQRYMTQFADQNF-----SDFLFRWYLEKGKRGKLLSQPISQHGQLANFLQAH 932
+ Q + +F +N ++ +E G+ K +++ S NF+Q
Sbjct: 235 KWSKQKAKWKKDEKFERENILLQQKKKMTKKFEMESGEEDKKINESCS--AVFENFIQEK 292
Query: 933 EHLSWLHEINSQEL-----------EKAHATLLGLANMETRYFAKKKTLLGLSKLAALAS 981
E L H+ ++ +L E+ HA L L ++ T + T L L K A+
Sbjct: 293 EELLKQHQSDTLQLEELRKTKEVMQEELHAQALILESLNTNLY---YTQLELQKEKAIVG 349
Query: 982 DFSEDMLQEKIEEMAEQERFLLHQETLPEQLLAEKQLNL 1020
+ E MLQ K E E+ + + Q+L E+ ++L
Sbjct: 350 NL-EKMLQTKFAETEEKYKHTI-------QILTEENIHL 380
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 32.3 bits (72), Expect = 2.7
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 946 LEKAHATLLGLANMET-RYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQERFLLH 1004
L++ A L L N + R F K K LL +S+ E++++ + +++A + R L
Sbjct: 812 LQRNCAAYLKLRNWQWWRLFTKVKPLLQVSRQEEEMMAKEEELVKVREKQLAAENR-LTE 870
Query: 1005 QETLPEQLLAEK 1016
ETL QL+AEK
Sbjct: 871 METLQSQLMAEK 882
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 32.3 bits (72), Expect = 2.7
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 6 PSPRTPGTGS-----RRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSS 60
PSP PG S R P GPGS +AS + P G A + L + G R+ L+S
Sbjct: 130 PSPPPPGGPSPEPSPARTPAPSPGPGSCG-SASPRSSP-GHAPARAALGTASGHRAGLTS 187
Query: 61 RGTPTRMFP 69
R TP+ + P
Sbjct: 188 RDTPSPVDP 196
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 32.3 bits (72), Expect = 2.7
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 4 AAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKG 36
AAP P T GTG RRG A P ST T R+G
Sbjct: 267 AAPVPTTGGTGQRRGTAAAPAPTST-GTGQRRG 298
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 32.0 bits (71), Expect = 3.5
Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 2 FPAAPSPRTP----GTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSS 57
FP P P P G GP GP P KG P AV P L G +
Sbjct: 1112 FPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPP--GAVGEPGLPGEAGMKGD 1169
Query: 58 LSSRGTP 64
L GTP
Sbjct: 1170 LGPLGTP 1176
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 32.0 bits (71), Expect = 3.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 5 APSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRR 55
+P PG+GSR G PG TP + G L S++ + V F G+R
Sbjct: 27 SPPGSGPGSGSRHGSAR---PGPTPEPSGSLGAALDSSLRAAVAFKAEGQR 74
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 32.0 bits (71), Expect = 3.5
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 4 AAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKG----LPLGSAVSSPVLFSPVGR 54
A +P PG G GP A P +P T S G P G+ + VLF+P GR
Sbjct: 490 ALSAPGLPGPGQPAGPGAWAPPLDSPGTPSPDGPWCFSPEGAQGAGGVLFAPFGR 544
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 31.6 bits (70), Expect = 4.6
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 3 PAAPSPRTPGT-----GSRRGPLA---GLGPGSTPRTASRKGLPL-----GSAVSSPVLF 49
P PS R+P + G G L+ GP STP T R+ P S +SPV F
Sbjct: 960 PPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGGASPVGF 1019
Query: 50 SPVGRRSSLSSRGTPTRMFP 69
+P G S P R FP
Sbjct: 1020 TPRGGLSPPGHSPGPPRTFP 1039
>gi|239757446 PREDICTED: similar to mCG146261 [Homo sapiens]
Length = 319
Score = 31.6 bits (70), Expect = 4.6
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 1 MFPAAPSPRTPGTGSRRGPLA-GLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLS 59
++P P P P RG LA PG + A +GL L +V +++ P+G S
Sbjct: 172 LYPGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLG----AS 227
Query: 60 SRGTPTRMFPHHSITESV---NYDVKTFGSSLPVKVMEALTLAE 100
+ G R H + V +K G+ P +V + E
Sbjct: 228 NPGCGCRNGGDHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVE 271
>gi|239751965 PREDICTED: similar to mCG146261 [Homo sapiens]
Length = 319
Score = 31.6 bits (70), Expect = 4.6
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 1 MFPAAPSPRTPGTGSRRGPLA-GLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLS 59
++P P P P RG LA PG + A +GL L +V +++ P+G S
Sbjct: 172 LYPGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLG----AS 227
Query: 60 SRGTPTRMFPHHSITESV---NYDVKTFGSSLPVKVMEALTLAE 100
+ G R H + V +K G+ P +V + E
Sbjct: 228 NPGCGCRNGGDHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVE 271
>gi|239746447 PREDICTED: hypothetical protein XP_002344225 [Homo
sapiens]
Length = 319
Score = 31.6 bits (70), Expect = 4.6
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 1 MFPAAPSPRTPGTGSRRGPLA-GLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLS 59
++P P P P RG LA PG + A +GL L +V +++ P+G S
Sbjct: 172 LYPGHPKPPHPPPVPGRGSLATSRAPGQSLPAAGVRGLRLEPSVRVDIIYQPLG----AS 227
Query: 60 SRGTPTRMFPHHSITESV---NYDVKTFGSSLPVKVMEALTLAE 100
+ G R H + V +K G+ P +V + E
Sbjct: 228 NPGCGCRNGGDHGLGSQVLLLTGVLKALGAGQPARVRVVAAVVE 271
>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
Length = 507
Score = 31.6 bits (70), Expect = 4.6
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 3 PAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVG 53
P+ P TP S GP + G G+ GL SA SS V FSP G
Sbjct: 36 PSLSDPSTPRGASPLGPGSAAGSGAAASGGLGLGLGGRSAASSSVSFSPGG 86
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 31.6 bits (70), Expect = 4.6
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 8 PRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSSPVLFSPVGRRSSLSSRGTPTRM 67
P PG G G L T AS+ + S P +FS R SS S+GT
Sbjct: 1434 PLPPGKGLDLGLL------ETQLLASQDSV---STDPKPYIFSDAQRPSSFGSKGT---- 1480
Query: 68 FPHHSITESV 77
FPHH I SV
Sbjct: 1481 FPHHDIATSV 1490
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 31.6 bits (70), Expect = 4.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 11 PGTGSRRGPLAGLGPGSTPRTASRKGLPLG-----SAVSSPVLFSPVGRRSSLSSRGTP 64
PG G GP G GPG P + R +P G +V P+ P+ + S ++SR P
Sbjct: 339 PGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQP 397
>gi|62243769 signal transducing adaptor family member 2 isoform 2
[Homo sapiens]
Length = 403
Score = 31.2 bits (69), Expect = 6.0
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 736 LQAASHYRQNRNSLYRREESL-----EKEPEYVPWTATSGPGGIRTVIIRQHEIVLKV 788
LQ + Y N N ++ E L EK + +PW ++ PG ++I+R EI KV
Sbjct: 43 LQGLTIYFYNSNRDFQHVEKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRDQEIKFKV 100
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 31.2 bits (69), Expect = 6.0
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 736 LQAASHYRQNRNSLYRREESL-----EKEPEYVPWTATSGPGGIRTVIIRQHEIVLKV 788
LQ + Y N N ++ E L EK + +PW ++ PG ++I+R EI KV
Sbjct: 43 LQGLTIYFYNSNRDFQHVEKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRDQEIKFKV 100
>gi|219803769 trichoplein [Homo sapiens]
Length = 498
Score = 31.2 bits (69), Expect = 6.0
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 903 RWYLEKGKRGKLLSQPISQHGQLANFL--QAHEHLSWLHEINSQELEKAHATLLGLANME 960
RW LE+ + + + Q +L FL Q + LS + +ELE L L E
Sbjct: 248 RWELERLEEERKQMEAFRQKAELGRFLRHQYNAQLSRRTQQIQEELEADRRILQALLEKE 307
Query: 961 TRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQER-------FLLHQET--LPEQ 1011
+ L L++ + +D + +++ IEE + ER LL +E + E+
Sbjct: 308 D-----ESQRLHLARREQVMADVA--WMKQAIEEQLQLERAREAELQMLLREEAKEMWEK 360
Query: 1012 LLAEKQLNLSAMPVLTAPQLIGLYI-----CEENRRANEYDFKKALDLLEYIDEEEDI 1064
AE SA L + L G E+NRRA E K L+ ++E ++
Sbjct: 361 REAEWARERSARDRLMSEVLTGRQQQIQEKIEQNRRAQEESLKHREQLIRNLEEVREL 418
>gi|14150056 trichoplein [Homo sapiens]
Length = 498
Score = 31.2 bits (69), Expect = 6.0
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 903 RWYLEKGKRGKLLSQPISQHGQLANFL--QAHEHLSWLHEINSQELEKAHATLLGLANME 960
RW LE+ + + + Q +L FL Q + LS + +ELE L L E
Sbjct: 248 RWELERLEEERKQMEAFRQKAELGRFLRHQYNAQLSRRTQQIQEELEADRRILQALLEKE 307
Query: 961 TRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEMAEQER-------FLLHQET--LPEQ 1011
+ L L++ + +D + +++ IEE + ER LL +E + E+
Sbjct: 308 D-----ESQRLHLARREQVMADVA--WMKQAIEEQLQLERAREAELQMLLREEAKEMWEK 360
Query: 1012 LLAEKQLNLSAMPVLTAPQLIGLYI-----CEENRRANEYDFKKALDLLEYIDEEEDI 1064
AE SA L + L G E+NRRA E K L+ ++E ++
Sbjct: 361 REAEWARERSARDRLMSEVLTGRQQQIQEKIEQNRRAQEESLKHREQLIRNLEEVREL 418
>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
Length = 1104
Score = 31.2 bits (69), Expect = 6.0
Identities = 46/188 (24%), Positives = 63/188 (33%), Gaps = 40/188 (21%)
Query: 11 PGTGSRRGPLAGLGPGSTPRTASRKGLPLGSAVSS---PVLFSPVGRRSSLSSRGTPTRM 67
PG+GS GP GPG+ P + P G A S S G S +
Sbjct: 264 PGSGSGSGPGPSSGPGAAPAADKEREAPGGGAASGGACSAASSASGGSSCCAPPAAAAAA 323
Query: 68 FP-----------HHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWAC 116
P HH++ E+ + V+T + T+N D W
Sbjct: 324 VPPAAAANHHHHHHHALHEAPKFTVETL-------------------EHTVNNDSEIWGL 364
Query: 117 LVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVM 176
L + LI K A S + L L P + +L S S S +
Sbjct: 365 LQPYQHLICGKNA-SGVLCLPDSLNLHRDPQRSNKPGELPMFSQSELRTIEQS------L 417
Query: 177 VATREGSI 184
+ATR GSI
Sbjct: 418 LATRVGSI 425
>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
Length = 783
Score = 30.8 bits (68), Expect = 7.8
Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 811 CFLDGYVSQLKSVDK-----SSNRERYDNLEMEYLQKRSDLLSPLLSLGQYLWAASLAEK 865
C D +S+ + +++ + N + E QKR L + L + + +L +K
Sbjct: 370 CLTDTCISEKQQLEEKIKEATQNEAKVKQQYQEEQQKRKLLYQNVDELHRQV--RTLQDK 427
Query: 866 YCDFDILVQMCEQTDNQSRLQRY---MTQFADQNFSDFLFRWYLEKGKRGKLLSQPISQH 922
++L C Q QSR+Q+ + Q ++ R Y E K + LS+ +S+
Sbjct: 428 E---NLLEMTCSQ--QQSRIQQQEALLKQLENEK------RKYDEHVKSNQELSEKLSKL 476
Query: 923 GQLANFLQAHEHLSWLHEINSQEL---EKAHATLLGLANMETRYFAKKKTLLGLSKLAAL 979
Q L+ E+L L +N EK H + L + +Y + L ++
Sbjct: 477 QQEKEALR-EEYLRLLKLLNVHVRNYNEKHHQQKVKL--QKVKYRLTNEVELRDKRINQF 533
Query: 980 ASDFSEDMLQEKIEE--------MAEQERFLLHQETLPEQLLAEKQLNLSAMPVLTAPQL 1031
+ +LQ KIE+ A+ + LL + L EQ++ ++QL S +++ Q
Sbjct: 534 EDEIG--ILQHKIEKEKAIQDQITAQNDTLLLEKRKLQEQVIEQEQLIHSNKWTISSIQS 591
Query: 1032 IGLYICEENRRANE 1045
LY+ +EN++ E
Sbjct: 592 RVLYMDKENKQLQE 605
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 30.8 bits (68), Expect = 7.8
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 917 QPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKL 976
Q + + A F + H+HL+ HE+ Q+ K +L + AK++ L +
Sbjct: 88 QQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEMLAAKRQQELEQQRQ 147
Query: 977 AALASDFSEDMLQEKIEEMAEQERFLL--HQETLPEQLLAEKQLNL 1020
E QE++E+ +++ L+ ++E E +A ++ L
Sbjct: 148 -------REQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKL 186
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 30.8 bits (68), Expect = 7.8
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 917 QPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKL 976
Q + + A F + H+HL+ HE+ Q+ K +L + AK++ L +
Sbjct: 87 QQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEMLAAKRQQELEQQRQ 146
Query: 977 AALASDFSEDMLQEKIEEMAEQERFLL--HQETLPEQLLAEKQLNL 1020
E QE++E+ +++ L+ ++E E +A ++ L
Sbjct: 147 -------REQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKL 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,185,406
Number of Sequences: 37866
Number of extensions: 1979786
Number of successful extensions: 7273
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 7216
Number of HSP's gapped (non-prelim): 90
length of query: 1156
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1043
effective length of database: 13,968,660
effective search space: 14569312380
effective search space used: 14569312380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.