Guide to the Human Genome
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Name: LOC100287233 Sequence: fasta or formatted (319aa) NCBI GI: 239746447
Description:

PREDICTED: hypothetical protein XP_002344225

Not currently referenced in the text

Other entries for this name:
alt mRNA {319aa} PREDICTED: similar to mCG146261
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         30           2
 C cysteine            1.6          5           2
 D aspartate           2.5          8           1
 E glutamate           2.5          8           1
 F phenylalanine       1.9          6           1
 G glycine            16.3         52           3
 H histidine           3.8         12           1
 I isoleucine          1.3          4           2
 K lysine              1.6          5           1
 L leucine            15.4         49           3
 M methionine          0.3          1           1
 N asparagine          0.9          3           1
 P proline             8.8         28           3
 Q glutamine           5.0         16           1
 R arginine           10.3         33           2
 S serine              2.8          9           1
 T threonine           1.6          5           1
 V valine             11.9         38           2
 W tryptophan          0.9          3           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344225 
LOC100292522          1.000   PREDICTED: similar to mCG146261 
LOC100287233          1.000   PREDICTED: similar to mCG146261 
F8A1                  0.024   coagulation factor VIII-associated protein 
F8A3                  0.024   coagulation factor VIII-associated (intronic transcr...
F8A2                  0.024   coagulation factor VIII-associated (intronic transcr...
DMWD                  0.021   dystrophia myotonica-containing WD repeat motif prot...
BAT3                  0.019   HLA-B associated transcript-3 isoform b 
BAT3                  0.019   HLA-B associated transcript-3 isoform b 
BAT3                  0.019   HLA-B associated transcript-3 isoform b 
BAT3                  0.019   HLA-B associated transcript-3 isoform a 
CEBPA                 0.018   CCAAT/enhancer binding protein alpha 
LOC100292488          0.018   PREDICTED: hypothetical protein 
LOC100289965          0.018   PREDICTED: hypothetical protein XP_002347141 
LOC100289007          0.018   PREDICTED: hypothetical protein XP_002342994 
C6orf174              0.016   hypothetical protein LOC387104 
R3HDM1                0.016   R3H domain containing 1 
HCN2                  0.014   hyperpolarization activated cyclic nucleotide-gated...
ARTN                  0.014   neurotrophic factor artemin isoform 2 
ARTN                  0.014   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.014   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.014   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.014   neurotrophic factor artemin isoform 3 precursor [Ho...
SLC2A6                0.014   solute carrier family 2 (facilitated glucose transp...
SLC2A6                0.014   solute carrier family 2 (facilitated glucose transp...
MED25                 0.013   mediator complex subunit 25 
COL16A1               0.013   alpha 1 type XVI collagen precursor 
BAHD1                 0.013   bromo adjacent homology domain containing 1 
PKDREJ                0.013   receptor for egg jelly-like protein precursor 
MXRA7                 0.013   transmembrane anchor protein 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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