Search of human proteins with 253314445

Search of human proteins with 253314445

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
         (251 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                   509   e-145
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                    493   e-140
gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]                   447   e-126
gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]                   430   e-121
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                    382   e-106
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                   270   9e-73
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]                   207   5e-54
gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]                   207   7e-54
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]          135   3e-32
gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]        60   2e-09
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               32   0.40 
gi|188528675 slit homolog 1 [Homo sapiens]                             32   0.52 
gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens]                  29   3.4  
gi|31657140 insulin receptor-related receptor precursor [Homo sa...    29   4.4  
gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]                      29   4.4  
gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]                      29   4.4  
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    29   4.4  
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    29   4.4  
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    29   4.4  
gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]                 28   5.8  
gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]                 28   5.8  
gi|131889097 cancer susceptibility candidate 1 isoform b [Homo s...    28   5.8  
gi|131889447 cancer susceptibility candidate 1 isoform c [Homo s...    28   5.8  
gi|131888105 cancer susceptibility candidate 1 isoform a [Homo s...    28   5.8  
gi|118498362 kinectin 1 isoform b [Homo sapiens]                       28   7.6  
gi|118498356 kinectin 1 isoform a [Homo sapiens]                       28   7.6  
gi|118498368 kinectin 1 isoform c [Homo sapiens]                       28   7.6  
gi|33620775 kinectin 1 isoform a [Homo sapiens]                        28   7.6  
gi|149588599 membrane-spanning 4-domains, subfamily A, member 15...    28   7.6  
gi|223005862 echinoderm microtubule associated protein like 6 [H...    28   9.9  

>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score =  509 bits (1312), Expect = e-145
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSL 240
           EEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSL
Sbjct: 181 EEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSL 240

Query: 241 EEEEFRLPELD 251
           EEEEFRLPELD
Sbjct: 241 EEEEFRLPELD 251


>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score =  493 bits (1268), Expect = e-140
 Identities = 251/284 (88%), Positives = 251/284 (88%), Gaps = 33/284 (11%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEE---------------------------------ESGKIAVEYRPSEDIVGV 207
           EEPMDKVEE                                 ESGKIAVEYRPSEDIVGV
Sbjct: 181 EEPMDKVEEGPLSFLMKRKTAQKLAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGV 240

Query: 208 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251
           RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 241 RCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284


>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
          Length = 228

 Score =  447 bits (1150), Expect = e-126
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129

Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEE 212
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEE
Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEE 189

Query: 213 LHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251
           LHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 190 LHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 228


>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
          Length = 261

 Score =  430 bits (1106), Expect = e-121
 Identities = 219/252 (86%), Positives = 219/252 (86%), Gaps = 33/252 (13%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129

Query: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE----------------------- 189
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE                       
Sbjct: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 189

Query: 190 ----------ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 239
                     ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS
Sbjct: 190 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 249

Query: 240 LEEEEFRLPELD 251
           LEEEEFRLPELD
Sbjct: 250 LEEEEFRLPELD 261


>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score =  382 bits (980), Expect = e-106
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180
           YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV
Sbjct: 121 YFGFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLV 180

Query: 181 EEPMDKVEE 189
           EEPMDKVEE
Sbjct: 181 EEPMDKVEE 189


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score =  270 bits (690), Expect = 9e-73
 Identities = 133/134 (99%), Positives = 134/134 (100%)

Query: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
           MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1   MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60

Query: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
           FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61  FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120

Query: 121 YFGFNGCSKRIIKL 134
           YFGFNGCSKRIIK+
Sbjct: 121 YFGFNGCSKRIIKV 134



 Score = 77.8 bits (190), Expect = 8e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 216 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166


>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
          Length = 143

 Score =  207 bits (528), Expect = 5e-54
 Identities = 101/102 (99%), Positives = 102/102 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 134
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 111



 Score = 77.8 bits (190), Expect = 8e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 216 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 108 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 143


>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
          Length = 116

 Score =  207 bits (527), Expect = 7e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69

Query: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score =  135 bits (340), Expect = 3e-32
 Identities = 69/81 (85%), Positives = 70/81 (86%)

Query: 13  SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72
           SDKTLLVWELSSGPTA+ALH SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 84  SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143

Query: 73  AHRAQKACDRKQLFQKSPVKV 93
            H AQKAC RKQLFQ SPVKV
Sbjct: 144 VHGAQKACHRKQLFQTSPVKV 164


>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1  MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32
          MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1  MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 38  AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 96
           AF ++G++  V V    A    G YA +KF +   AHRA+ A   + +  ++P+K+  G
Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412



 Score = 30.4 bits (67), Expect = 1.5
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 15  KTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAH 74
           KTLL+  LS    AE L   LF  F +FG + S+R+   +     G  A + F   + A 
Sbjct: 139 KTLLISSLSPALPAEHLEDRLFHQFKRFGEI-SLRL---SHTPELGRVAYVNFRHPQDAR 194

Query: 75  RA-QKACDRKQLFQKSPVKV 93
            A Q A  R+ L    P+KV
Sbjct: 195 EARQHALARQLLLYDRPLKV 214


>gi|188528675 slit homolog 1 [Homo sapiens]
          Length = 1534

 Score = 32.0 bits (71), Expect = 0.52
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 123  GFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPS------CDCRSPG 176
            GF+GC + +    EL D  + + +  +VP  +   K +C   +  P+      C C +  
Sbjct: 1309 GFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGW 1368

Query: 177  IGL-VEEPMD 185
            +GL  ++P D
Sbjct: 1369 VGLHCDQPAD 1378


>gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens]
          Length = 350

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 177 IGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQ 226
           I L++E   + E E+    V  RP+ D+      E++HGL   P  PWK+
Sbjct: 273 IQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKE 322


>gi|31657140 insulin receptor-related receptor precursor [Homo
           sapiens]
          Length = 1297

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 14/56 (25%)

Query: 170 CDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWK 225
           C C+ P  G V  P++  E    K              + E  LH  I +P SPWK
Sbjct: 688 CPCQHPPPGQVLPPLEAQEASFQK--------------KFENFLHNAITIPISPWK 729


>gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]
          Length = 720

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 145 NEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDI 204
           NED+   +P+++L           +C+ R+  + ++ +  D +E+ + ++  ++  SED+
Sbjct: 103 NEDTPKSVPEKNL--------FKEACEKRAQDLEMMAD--DNIEDSTARLDTQH--SEDM 150

Query: 205 VGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLP 248
              R EE+ H +     +  K     +E  L D  L     R+P
Sbjct: 151 NATRSEEQFHVINHAEQTLRKMENYLKEKQLCDVLLIAGHLRIP 194


>gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]
          Length = 718

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 145 NEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDI 204
           NED+   +P+++L           +C+ R+  + ++ +  D +E+ + ++  ++  SED+
Sbjct: 103 NEDTPKSVPEKNL--------FKEACEKRAQDLEMMAD--DNIEDSTARLDTQH--SEDM 150

Query: 205 VGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLP 248
              R EE+ H +     +  K     +E  L D  L     R+P
Sbjct: 151 NATRSEEQFHVINHAEQTLRKMENYLKEKQLCDVLLIAGHLRIP 194


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 34  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 93
           SL   FSQFG   SV+V  +      GF   + +     A++A +  + K++  K    +
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGF-GFVSYEKHEDANKAVEEMNGKEISGKI---I 261

Query: 94  RLGTRHKAVQHQALALNSSK--CQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVP 151
            +G   K V+ QA      +   QE  + Y G N      + ++ L D  + E       
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEK------ 309

Query: 152 LPKQSLKFFCALEVVLPSCDCRSPGIGLV-----EEPMDKVEEESGKI 194
           L K+   F       +   D RS G G V     EE    V E +G+I
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 34  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 93
           SL   FSQFG   SV+V  +      GF   + +     A++A +  + K++  K    +
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGF-GFVSYEKHEDANKAVEEMNGKEISGKI---I 261

Query: 94  RLGTRHKAVQHQALALNSSK--CQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVP 151
            +G   K V+ QA      +   QE  + Y G N      + ++ L D  + E       
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEK------ 309

Query: 152 LPKQSLKFFCALEVVLPSCDCRSPGIGLV-----EEPMDKVEEESGKI 194
           L K+   F       +   D RS G G V     EE    V E +G+I
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 34  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 93
           SL   FSQFG   SV+V  +      GF   + +     A++A +  + K++  K    +
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGF-GFVSYEKHEDANKAVEEMNGKEISGKI---I 261

Query: 94  RLGTRHKAVQHQALALNSSK--CQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVP 151
            +G   K V+ QA      +   QE  + Y G N      + ++ L D  + E       
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEK------ 309

Query: 152 LPKQSLKFFCALEVVLPSCDCRSPGIGLV-----EEPMDKVEEESGKI 194
           L K+   F       +   D RS G G V     EE    V E +G+I
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357


>gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]
          Length = 2647

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 178  GLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWK 225
            GLVE P+D V+   G   V Y PS +  G      L+G  +VP SP+K
Sbjct: 1492 GLVE-PVDVVDNADGTQTVNYVPSRE--GPYSISVLYGDEEVPRSPFK 1536


>gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]
          Length = 2639

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 178  GLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWK 225
            GLVE P+D V+   G   V Y PS +  G      L+G  +VP SP+K
Sbjct: 1492 GLVE-PVDVVDNADGTQTVNYVPSRE--GPYSISVLYGDEEVPRSPFK 1536


>gi|131889097 cancer susceptibility candidate 1 isoform b [Homo
           sapiens]
          Length = 716

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 176 GIGLVEEPMDKVEEESGKIAVEYRPS-EDIVGVRCEEEL 213
           G  L++E   KVEEE G I V+   + E+   ++CE E+
Sbjct: 306 GSHLIQEEEIKVEEEQGDIEVKMSSAEEESEAIKCEREM 344


>gi|131889447 cancer susceptibility candidate 1 isoform c [Homo
           sapiens]
          Length = 690

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 176 GIGLVEEPMDKVEEESGKIAVEYRPS-EDIVGVRCEEEL 213
           G  L++E   KVEEE G I V+   + E+   ++CE E+
Sbjct: 370 GSHLIQEEEIKVEEEQGDIEVKMSSAEEESEAIKCEREM 408


>gi|131888105 cancer susceptibility candidate 1 isoform a [Homo
           sapiens]
          Length = 722

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 176 GIGLVEEPMDKVEEESGKIAVEYRPS-EDIVGVRCEEEL 213
           G  L++E   KVEEE G I V+   + E+   ++CE E+
Sbjct: 312 GSHLIQEEEIKVEEEQGDIEVKMSSAEEESEAIKCEREM 350


>gi|118498362 kinectin 1 isoform b [Homo sapiens]
          Length = 1306

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 211  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 244
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1103 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1138


>gi|118498356 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 211  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 244
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


>gi|118498368 kinectin 1 isoform c [Homo sapiens]
          Length = 1300

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 211  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 244
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1097 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1132


>gi|33620775 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 211  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 244
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


>gi|149588599 membrane-spanning 4-domains, subfamily A, member 15
           isoform 1 [Homo sapiens]
          Length = 240

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 150 VPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRC 209
           V +P  +    C    +LP+  C+ PGI   EEP    +        + RP E    +  
Sbjct: 12  VVIPPNNASGLCPPPAILPTSMCQPPGIMQFEEPPLGAQTPRATQPPDLRPVETF--LTG 69

Query: 210 EEELHGLIQV 219
           E ++ G +Q+
Sbjct: 70  EPKVLGTVQI 79


>gi|223005862 echinoderm microtubule associated protein like 6 [Homo
            sapiens]
          Length = 1958

 Score = 27.7 bits (60), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 4    LVPFAVPIESDKTLLVWELSS 24
            L+P    +  DKTL +WELS+
Sbjct: 1009 LLPICATVSDDKTLRIWELSA 1029


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,239,137
Number of Sequences: 37866
Number of extensions: 464549
Number of successful extensions: 1148
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 34
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.