Guide to the Human Genome
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Name: RDM1 Sequence: fasta or formatted (116aa) NCBI GI: 253314453
Description:

RAD52 motif 1 isoform 7

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [284aa] RAD52 motif 1 isoform 1
alt prot [166aa] RAD52 motif 1 isoform 3
alt prot [251aa] RAD52 motif 1 isoform 4
alt prot [228aa] RAD52 motif 1 isoform 5
alt prot [143aa] RAD52 motif 1 isoform 6
alt prot [261aa] RAD52 motif 1 isoform 8
alt prot [236aa] RAD52 motif 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         14           2
 C cysteine            2.6          3           1
 D aspartate           1.7          2           1
 E glutamate           0.9          1           1
 F phenylalanine       7.8          9           1
 G glycine             4.3          5           1
 H histidine           6.9          8           1
 I isoleucine          2.6          3           2
 K lysine              7.8          9           1
 L leucine             9.5         11           2
 M methionine          0.9          1           1
 N asparagine          3.4          4           1
 P proline             5.2          6           3
 Q glutamine           6.9          8           1
 R arginine            6.0          7           1
 S serine              7.8          9           2
 T threonine           1.7          2           1
 V valine              6.9          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.2          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD52 motif 1 isoform 7 
RDM1                  0.935   RAD52 motif 1 isoform 8 
RDM1                  0.935   RAD52 motif 1 isoform 6 
RDM1                  0.935   RAD52 motif 1 isoform 5 
RDM1                  0.843   RAD52 motif 1 isoform 2 
RDM1                  0.843   RAD52 motif 1 isoform 1 
RDM1                  0.843   RAD52 motif 1 isoform 4 
RDM1                  0.843   RAD52 motif 1 isoform 3 
LOC100131347          0.338   PREDICTED: similar to hCG2007264 
RBM15B                0.032   RNA binding motif protein 15B 
POLR2B                0.009   DNA directed RNA polymerase II polypeptide B 
DND1                  0.009   dead end homolog 1 
BBS10                 0.005   Bardet-Biedl syndrome 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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