Guide to the Human Genome
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Name: RDM1 Sequence: fasta or formatted (236aa) NCBI GI: 77873934
Description:

RAD52 motif 1 isoform 2

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [284aa] RAD52 motif 1 isoform 1
alt prot [166aa] RAD52 motif 1 isoform 3
alt prot [251aa] RAD52 motif 1 isoform 4
alt prot [228aa] RAD52 motif 1 isoform 5
alt prot [143aa] RAD52 motif 1 isoform 6
alt prot [116aa] RAD52 motif 1 isoform 7
alt prot [261aa] RAD52 motif 1 isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         23           2
 C cysteine            2.5          6           1
 D aspartate           3.0          7           1
 E glutamate           6.8         16           2
 F phenylalanine       6.4         15           2
 G glycine             4.2         10           1
 H histidine           2.5          6           2
 I isoleucine          3.8          9           2
 K lysine              8.1         19           1
 L leucine            13.1         31           2
 M methionine          1.7          4           1
 N asparagine          2.1          5           1
 P proline             5.1         12           1
 Q glutamine           5.9         14           1
 R arginine            4.2         10           1
 S serine              7.6         18           2
 T threonine           2.5          6           1
 V valine              8.1         19           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.1          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD52 motif 1 isoform 2 
RDM1                  0.943   RAD52 motif 1 isoform 1 
RDM1                  0.810   RAD52 motif 1 isoform 4 
RDM1                  0.803   RAD52 motif 1 isoform 8 
RDM1                  0.667   RAD52 motif 1 isoform 5 
RDM1                  0.556   RAD52 motif 1 isoform 3 
RDM1                  0.413   RAD52 motif 1 isoform 6 
RDM1                  0.413   RAD52 motif 1 isoform 7 
LOC100131347          0.249   PREDICTED: similar to hCG2007264 
LOC100131347          0.079   PREDICTED: similar to RAD52 motif 1 
RBM15B                0.016   RNA binding motif protein 15B 
SLIT1                 0.016   slit homolog 1 
EML6                  0.007   echinoderm microtubule associated protein like 6 [H...
NES                   0.007   nestin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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