Guide to the Human Genome
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Name: RDM1 Sequence: fasta or formatted (143aa) NCBI GI: 253314451
Description:

RAD52 motif 1 isoform 6

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [284aa] RAD52 motif 1 isoform 1
alt prot [166aa] RAD52 motif 1 isoform 3
alt prot [251aa] RAD52 motif 1 isoform 4
alt prot [228aa] RAD52 motif 1 isoform 5
alt prot [116aa] RAD52 motif 1 isoform 7
alt prot [261aa] RAD52 motif 1 isoform 8
alt prot [236aa] RAD52 motif 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         14           2
 C cysteine            2.8          4           1
 D aspartate           2.1          3           1
 E glutamate           6.3          9           4
 F phenylalanine       7.7         11           1
 G glycine             4.9          7           1
 H histidine           4.2          6           1
 I isoleucine          2.1          3           2
 K lysine              7.0         10           1
 L leucine             9.8         14           2
 M methionine          0.7          1           1
 N asparagine          2.8          4           1
 P proline             6.3          9           3
 Q glutamine           7.0         10           1
 R arginine            5.6          8           1
 S serine              7.7         11           2
 T threonine           1.4          2           1
 V valine              6.3          9           1
 W tryptophan          0.7          1           1
 Y tyrosine            4.9          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD52 motif 1 isoform 6 
RDM1                  0.930   RAD52 motif 1 isoform 3 
RDM1                  0.743   RAD52 motif 1 isoform 8 
RDM1                  0.743   RAD52 motif 1 isoform 5 
RDM1                  0.743   RAD52 motif 1 isoform 7 
RDM1                  0.669   RAD52 motif 1 isoform 2 
RDM1                  0.669   RAD52 motif 1 isoform 1 
RDM1                  0.669   RAD52 motif 1 isoform 4 
LOC100131347          0.268   PREDICTED: similar to hCG2007264 
RBM15B                0.026   RNA binding motif protein 15B 
LOC645399             0.007   PREDICTED: similar to PRAME family member 10 
LOC645382             0.007   PREDICTED: similar to PRAME family member 10 
POLR2B                0.007   DNA directed RNA polymerase II polypeptide B 
CCDC79                0.007   coiled-coil domain containing 79 
DND1                  0.007   dead end homolog 1 
BBS10                 0.004   Bardet-Biedl syndrome 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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