Guide to the Human Genome
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Name: CPNE5 Sequence: fasta or formatted (593aa) NCBI GI: 25141323
Description:

copine V

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         41           3
 C cysteine            1.9         11           2
 D aspartate           7.1         42           2
 E glutamate           5.1         30           2
 F phenylalanine       5.4         32           2
 G glycine             6.6         39           2
 H histidine           2.0         12           1
 I isoleucine          5.4         32           3
 K lysine              5.6         33           4
 L leucine             7.4         44           2
 M methionine          2.7         16           1
 N asparagine          4.6         27           1
 P proline             6.1         36           3
 Q glutamine           3.9         23           1
 R arginine            4.7         28           1
 S serine              7.9         47           2
 T threonine           5.9         35           2
 V valine              7.3         43           2
 W tryptophan          0.5          3           1
 Y tyrosine            3.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   copine V 
CPNE8                 0.777   copine VIII 
CPNE9                 0.730   copine-like protein 
CPNE3                 0.436   copine III 
CPNE2                 0.429   copine II 
CPNE4                 0.417   copine IV 
CPNE1                 0.412   copine I isoform a 
CPNE1                 0.412   copine I isoform a 
CPNE1                 0.412   copine I isoform a 
CPNE1                 0.412   copine I isoform a 
CPNE1                 0.412   copine I isoform a 
CPNE1                 0.412   copine I isoform a 
CPNE1                 0.412   copine I isoform a 
CPNE1                 0.412   copine I isoform b 
CPNE7                 0.395   copine 7 isoform a 
CPNE6                 0.389   copine 6 
CPNE7                 0.382   copine 7 isoform b 
SYT10                 0.026   synaptotagmin X 
SYT9                  0.026   synaptotagmin IX 
PRKCG                 0.025   protein kinase C, gamma 
SYT1                  0.023   synaptotagmin I 
SYT1                  0.023   synaptotagmin I 
SYT1                  0.023   synaptotagmin I 
PRKCA                 0.022   protein kinase C, alpha 
MCTP1                 0.022   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.022   multiple C2 domains, transmembrane 1 isoform L [Hom...
SYT6                  0.020   synaptotagmin VI 
PRKCB                 0.019   protein kinase C, beta isoform 1 
PRKCB                 0.019   protein kinase C, beta isoform 2 
SYT3                  0.019   synaptotagmin III 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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