Guide to the Human Genome
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Name: CPNE3 Sequence: fasta or formatted (537aa) NCBI GI: 4503015
Description:

copine III

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         29           4
 C cysteine            2.8         15           1
 D aspartate           6.3         34           3
 E glutamate           5.2         28           2
 F phenylalanine       5.4         29           1
 G glycine             6.5         35           2
 H histidine           1.1          6           1
 I isoleucine          6.5         35           3
 K lysine              6.9         37           3
 L leucine             7.8         42           2
 M methionine          2.0         11           1
 N asparagine          5.6         30           2
 P proline             5.2         28           2
 Q glutamine           5.8         31           3
 R arginine            3.4         18           1
 S serine              6.7         36           2
 T threonine           5.4         29           2
 V valine              7.4         40           2
 W tryptophan          0.9          5           1
 Y tyrosine            3.5         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   copine III 
CPNE1                 0.674   copine I isoform a 
CPNE1                 0.674   copine I isoform a 
CPNE1                 0.674   copine I isoform a 
CPNE1                 0.674   copine I isoform a 
CPNE1                 0.674   copine I isoform a 
CPNE1                 0.674   copine I isoform a 
CPNE1                 0.674   copine I isoform a 
CPNE1                 0.674   copine I isoform b 
CPNE2                 0.653   copine II 
CPNE4                 0.540   copine IV 
CPNE7                 0.538   copine 7 isoform a 
CPNE6                 0.510   copine 6 
CPNE8                 0.484   copine VIII 
CPNE5                 0.479   copine V 
CPNE9                 0.454   copine-like protein 
CPNE7                 0.449   copine 7 isoform b 
SYT2                  0.036   synaptotagmin II 
SYT2                  0.036   synaptotagmin II 
SYT5                  0.033   synaptotagmin V 
SYT1                  0.032   synaptotagmin I 
SYT1                  0.032   synaptotagmin I 
SYT1                  0.032   synaptotagmin I 
SYT10                 0.032   synaptotagmin X 
SYT9                  0.029   synaptotagmin IX 
SYT3                  0.028   synaptotagmin III 
SYT3                  0.028   synaptotagmin III 
SYT3                  0.028   synaptotagmin III 
SYT6                  0.028   synaptotagmin VI 
PRKCG                 0.026   protein kinase C, gamma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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