Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CPNE8 Sequence: fasta or formatted (564aa) NCBI GI: 25121972
Description:

copine VIII

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         32           2
 C cysteine            1.8         10           2
 D aspartate           7.3         41           2
 E glutamate           5.1         29           2
 F phenylalanine       5.7         32           2
 G glycine             7.1         40           2
 H histidine           1.4          8           1
 I isoleucine          5.9         33           3
 K lysine              6.0         34           4
 L leucine             7.4         42           2
 M methionine          2.0         11           1
 N asparagine          5.1         29           1
 P proline             5.3         30           3
 Q glutamine           3.5         20           1
 R arginine            5.0         28           1
 S serine              7.4         42           2
 T threonine           5.0         28           2
 V valine              8.3         47           2
 W tryptophan          0.5          3           1
 Y tyrosine            4.4         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   copine VIII 
CPNE5                 0.817   copine V 
CPNE9                 0.764   copine-like protein 
CPNE2                 0.465   copine II 
CPNE3                 0.463   copine III 
CPNE1                 0.448   copine I isoform a 
CPNE1                 0.448   copine I isoform a 
CPNE1                 0.448   copine I isoform a 
CPNE1                 0.448   copine I isoform a 
CPNE1                 0.448   copine I isoform a 
CPNE1                 0.448   copine I isoform a 
CPNE1                 0.448   copine I isoform a 
CPNE1                 0.448   copine I isoform b 
CPNE4                 0.447   copine IV 
CPNE7                 0.432   copine 7 isoform a 
CPNE6                 0.419   copine 6 
CPNE7                 0.354   copine 7 isoform b 
PRKCG                 0.026   protein kinase C, gamma 
SYT10                 0.024   synaptotagmin X 
PRKCA                 0.022   protein kinase C, alpha 
MCTP1                 0.022   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.022   multiple C2 domains, transmembrane 1 isoform L [Hom...
SYT9                  0.021   synaptotagmin IX 
SYT1                  0.021   synaptotagmin I 
SYT1                  0.021   synaptotagmin I 
SYT1                  0.021   synaptotagmin I 
PRKCB                 0.021   protein kinase C, beta isoform 1 
PRKCB                 0.021   protein kinase C, beta isoform 2 
SYT5                  0.021   synaptotagmin V 
SYT3                  0.020   synaptotagmin III 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press