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Search of human proteins with 24432011
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24432011 progestin and adipoQ receptor family member VI
isoform 1 [Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24432011 progestin and adipoQ receptor family member VI isofo... 773 0.0
gi|41282031 progestin and adipoQ receptor family member VI isofo... 320 1e-87
gi|157389023 progestin and adipoQ receptor family member V [Homo... 165 6e-41
gi|157389021 progestin and adipoQ receptor family member V [Homo... 165 6e-41
gi|19115960 progestin and adipoQ receptor family member VIII [Ho... 69 8e-12
gi|30410020 progestin and adipoQ receptor family member VII [Hom... 52 8e-07
gi|38348324 progestin and adipoQ receptor family member IX [Homo... 42 0.001
gi|239756595 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|239745104 PREDICTED: hypothetical protein XP_002343360 [Homo ... 34 0.17
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 34 0.17
gi|31542756 progestin and adipoQ receptor family member IV [Homo... 34 0.22
gi|169167028 PREDICTED: hypothetical protein [Homo sapiens] 32 0.65
gi|169166752 PREDICTED: hypothetical protein [Homo sapiens] 32 0.65
gi|169166197 PREDICTED: hypothetical protein [Homo sapiens] 32 0.65
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 32 0.85
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 32 1.1
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 31 1.5
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 31 1.5
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 31 1.5
gi|155969701 espin-like [Homo sapiens] 31 1.5
gi|164420691 homeodomain interacting protein kinase 2 isoform 2 ... 30 2.5
gi|164420685 homeodomain interacting protein kinase 2 isoform 1 ... 30 2.5
gi|239746597 PREDICTED: hypothetical protein XP_002343794 [Homo ... 30 2.5
gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo s... 30 2.5
gi|23510368 homeobox D11 [Homo sapiens] 30 3.2
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 30 3.2
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 30 3.2
gi|54792090 hypothetical protein LOC23351 [Homo sapiens] 30 3.2
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 30 4.2
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 30 4.2
>gi|24432011 progestin and adipoQ receptor family member VI isoform
1 [Homo sapiens]
Length = 351
Score = 773 bits (1997), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL 60
MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL
Sbjct: 1 MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL 60
Query: 61 SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH 120
SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH
Sbjct: 61 SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH 120
Query: 121 LFCALLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFPEHRMNWATATSYSTS 180
LFCALLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFPEHRMNWATATSYSTS
Sbjct: 121 LFCALLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFPEHRMNWATATSYSTS 180
Query: 181 VQCWAPTSSWRQCWLIWDHAEPGWPHRNLPWAWQAQWPHWSWLQLGTYSLLLLSQPPCFG 240
VQCWAPTSSWRQCWLIWDHAEPGWPHRNLPWAWQAQWPHWSWLQLGTYSLLLLSQPPCFG
Sbjct: 181 VQCWAPTSSWRQCWLIWDHAEPGWPHRNLPWAWQAQWPHWSWLQLGTYSLLLLSQPPCFG 240
Query: 241 PPVHALCCRVAHWRGVPRPNNSEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPT 300
PPVHALCCRVAHWRGVPRPNNSEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPT
Sbjct: 241 PPVHALCCRVAHWRGVPRPNNSEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPT 300
Query: 301 GAEERGHRREGREEEGCLGGLAECERDREGALDGSGRSAEGLRGEMHACPG 351
GAEERGHRREGREEEGCLGGLAECERDREGALDGSGRSAEGLRGEMHACPG
Sbjct: 301 GAEERGHRREGREEEGCLGGLAECERDREGALDGSGRSAEGLRGEMHACPG 351
>gi|41282031 progestin and adipoQ receptor family member VI isoform
2 [Homo sapiens]
Length = 344
Score = 320 bits (820), Expect = 1e-87
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL 60
MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL
Sbjct: 107 MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL 166
Query: 61 SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH 120
SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH
Sbjct: 167 SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH 226
Query: 121 LFCALLTGFLFASHLPERLAPGRFDYIG 148
LFCALLTGFLFASHLPERLAPGRFDYIG
Sbjct: 227 LFCALLTGFLFASHLPERLAPGRFDYIG 254
>gi|157389023 progestin and adipoQ receptor family member V [Homo
sapiens]
Length = 330
Score = 165 bits (417), Expect = 6e-41
Identities = 80/148 (54%), Positives = 103/148 (69%), Gaps = 3/148 (2%)
Query: 1 MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL 60
MS RHICYFLDYGA++L+SLG A Y+AY+ P + + H ++V A LN+ L TGL
Sbjct: 107 MSKNARHICYFLDYGAVNLFSLGSAIAYSAYTFPDALMCTTFHDYYVALAVLNTILSTGL 166
Query: 61 SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH 120
SCYSRFLE++ P L KV+R AFAYP+ +D+LP+FYRL L G Q ++ H H
Sbjct: 167 SCYSRFLEIQKPRLCKVIRVLAFAYPYTWDSLPIFYRLFLFPGES---AQNEATSYHQKH 223
Query: 121 LFCALLTGFLFASHLPERLAPGRFDYIG 148
+ LL FL+++HLPERLAPGRFDYIG
Sbjct: 224 MIMTLLASFLYSAHLPERLAPGRFDYIG 251
>gi|157389021 progestin and adipoQ receptor family member V [Homo
sapiens]
Length = 330
Score = 165 bits (417), Expect = 6e-41
Identities = 80/148 (54%), Positives = 103/148 (69%), Gaps = 3/148 (2%)
Query: 1 MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGL 60
MS RHICYFLDYGA++L+SLG A Y+AY+ P + + H ++V A LN+ L TGL
Sbjct: 107 MSKNARHICYFLDYGAVNLFSLGSAIAYSAYTFPDALMCTTFHDYYVALAVLNTILSTGL 166
Query: 61 SCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYH 120
SCYSRFLE++ P L KV+R AFAYP+ +D+LP+FYRL L G Q ++ H H
Sbjct: 167 SCYSRFLEIQKPRLCKVIRVLAFAYPYTWDSLPIFYRLFLFPGES---AQNEATSYHQKH 223
Query: 121 LFCALLTGFLFASHLPERLAPGRFDYIG 148
+ LL FL+++HLPERLAPGRFDYIG
Sbjct: 224 MIMTLLASFLYSAHLPERLAPGRFDYIG 251
>gi|19115960 progestin and adipoQ receptor family member VIII [Homo
sapiens]
Length = 354
Score = 68.6 bits (166), Expect = 8e-12
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 10 YFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGLSCYSRF-LE 68
YF+DY +S+Y G A + YS +W + FF+PAAA +L CY+++
Sbjct: 144 YFVDYVGVSVYQYGSALAHFFYSSDQAW-YDRFWLFFLPAAAFCGWLSCAGCCYAKYRYR 202
Query: 69 LESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYHLFCALLTG 128
P + K+ + F+ D P+ +R+ LC GC QE + H + L++
Sbjct: 203 RPYPVMRKICQVVPAGLAFILDISPVAHRVALC--HLAGC-QEQAAWYHTLQILFFLVSA 259
Query: 129 FLFASHLPERLAPGRFDYIGEG 150
+ F+ +PE+ PG D +G G
Sbjct: 260 YFFSCPVPEKYFPGSCDIVGHG 281
>gi|30410020 progestin and adipoQ receptor family member VII [Homo
sapiens]
Length = 346
Score = 52.0 bits (123), Expect = 8e-07
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 10 YFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQFFVPAAALNSFLCTGLSCYSRFLEL 69
+FLDY +++Y G A + Y++ +W H + F+P AA ++L SCY+++ +
Sbjct: 139 FFLDYVGVAVYQFGSALAHFYYAIEPAW-HAQVQAVFLPMAAFLAWLSCIGSCYNKY--I 195
Query: 70 ESPG-LSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYHLFCALLTG 128
+ PG L + + + D P+ +R+ + + H + LL
Sbjct: 196 QKPGLLGRTCQEVPSVLAYALDISPVVHRI---FVSSDPTTDDPALLYHKCQVVFFLLAA 252
Query: 129 FLFASHLPERLAPGRFDYIGEG 150
F++ +PER PG G+G
Sbjct: 253 AFFSTFMPERWFPGSCHVFGQG 274
>gi|38348324 progestin and adipoQ receptor family member IX [Homo
sapiens]
Length = 377
Score = 41.6 bits (96), Expect = 0.001
Identities = 46/171 (26%), Positives = 63/171 (36%), Gaps = 30/171 (17%)
Query: 1 MSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMP------ASWLHGHLHQ---------- 44
+S R+R ++LDY ++S Y G Y Y +P A + +L Q
Sbjct: 145 LSLRLRAAFFYLDYASISYYGFGSTVAYYYYLLPGLSLLDARVMTPYLQQRLGWHVDCTR 204
Query: 45 -------FFVPAAALNSFLCTGLSCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYR 97
+P A + + CT C SR P LRT F P L P+
Sbjct: 205 LIAAYRALVLPVAFVLAVACTVACCKSRTDWCTYP---FALRTFVFVMP-LSMACPIMLE 260
Query: 98 LGLCWGRGHGCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIG 148
L RG L F ++ F S +PER+ PG FD IG
Sbjct: 261 SWLFDLRGE---NPTLFVHFYRRYFWLVVAAFFNVSKIPERIQPGLFDIIG 308
>gi|239756595 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 34.3 bits (77), Expect = 0.17
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 73 GLSKVLRTGAFAYPFLFDNLP-----LFYRLGLC--WGRGHGCGQEALSTSHGYHLFCAL 125
G+ + + T A A PF + LP R+GL W G G EAL +H +H +
Sbjct: 33 GIPRKVWTPALA-PFTWTRLPSTCPVCVVRMGLAESWPPTLG-GGEALRGAHEFH--AVI 88
Query: 126 LTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFPEHRMN---WATATSYSTSV 181
T P L+ G PGP R GA +P R + ATA S + S+
Sbjct: 89 STSSYLPGACPPALSGSASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARSL 147
>gi|239745104 PREDICTED: hypothetical protein XP_002343360 [Homo
sapiens]
Length = 152
Score = 34.3 bits (77), Expect = 0.17
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 276 PGPSADEEPRFGPNQVGTHL-----SLEPTG---AEERGHRREGREEEGCLGGLAECERD 327
PGP+ D EPR+ P ++ L LE G A G GR +E G ++ C D
Sbjct: 50 PGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGGPATSGRSKEP-WGHISGC-GD 107
Query: 328 REGALDGSGRSAEGLRG 344
GA GSGR +G G
Sbjct: 108 PPGAFRGSGRICQGTSG 124
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 34.3 bits (77), Expect = 0.17
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 271 WRGQRPGPSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGCLGGLAECERDREG 330
W+ +R G +++ R +Q + +E G EE G EG EEEG E E++ EG
Sbjct: 702 WK-KRDGEEQEQKEREQGHQKERNQEMEEGGEEEHG---EGEEEEG--DREEEEEKEGEG 755
Query: 331 ALDGSGRSAEGLR 343
+G G EG R
Sbjct: 756 KEEGEGEEVEGER 768
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 271 WRGQRP-GPSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGCLGGLAECERDRE 329
W G+ G EE G + G E G EE G EG EEEG G E E + E
Sbjct: 955 WEGEEEEGEGEGEEEGEGEGEEG-----EGEGEEEEGEG-EGEEEEGEEEGEEEGEGEEE 1008
Query: 330 GALDGSGRSAEGLRGEMHACPG 351
G +G + GE+ G
Sbjct: 1009 GEGEGEEEEEGEVEGEVEGEEG 1030
>gi|31542756 progestin and adipoQ receptor family member IV [Homo
sapiens]
Length = 273
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 97 RLGLCWGRGHGCGQEALSTSHGYHLF--CALLTGFLFASHLPERLAPGRFDYIG 148
RL + RG G G A + Y ALL G + + LPER PGRFDY G
Sbjct: 184 RLLVFGARGVGLGSGAPGSLPCYLRMDALALLGGLVNVARLPERWGPGRFDYWG 237
>gi|169167028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 32.3 bits (72), Expect = 0.65
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 106 HGCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFP 165
HG +A+ G LL+ FA + PG + +G+G PGP + AG + P
Sbjct: 78 HGISTKAVE---GVRANLRLLSLDAFAPPVRREEPPG-IERVGKGCPGPRKAAAGRRSPP 133
Query: 166 EHRMNW 171
E R W
Sbjct: 134 ERRWEW 139
>gi|169166752 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 32.3 bits (72), Expect = 0.65
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 106 HGCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFP 165
HG +A+ G LL+ FA + PG + +G+G PGP + AG + P
Sbjct: 78 HGISTKAVE---GVRANLRLLSLDAFAPPVRREEPPG-IERVGKGCPGPRKAAAGRRSPP 133
Query: 166 EHRMNW 171
E R W
Sbjct: 134 ERRWEW 139
>gi|169166197 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 32.3 bits (72), Expect = 0.65
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 106 HGCGQEALSTSHGYHLFCALLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGADAFP 165
HG +A+ G LL+ FA + PG + +G+G PGP + AG + P
Sbjct: 78 HGISTKAVE---GVRANLRLLSLDAFAPPVRREEPPG-IERVGKGCPGPRKAAAGRRSPP 133
Query: 166 EHRMNW 171
E R W
Sbjct: 134 ERRWEW 139
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 32.0 bits (71), Expect = 0.85
Identities = 39/118 (33%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 237 PCFGPPVHALCCRVAHWR---------GVPRPNNSEAPSLTLSWRGQRPGPSADEEPRFG 287
P GP A R AH G P E S G PG A EPR G
Sbjct: 65 PDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQGGEETSGAQQVEGASPGRGAQGEPR-G 123
Query: 288 PNQVGTHLSLEPTGAEERGHRREGREEEGCLGGLAECERDREGALDGSGRSAEGLRGE 345
Q S P EE R E EG G A D EG L G AEG G+
Sbjct: 124 EAQREPEDSAAPERQEEAEQRPE--VPEGSASGEAGDSVDAEGPL-GDNIEAEGPAGD 178
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 209 LPWAWQAQWPHWSWLQLGTYSLLLLSQPPCFGP-----------------PVHALCC 248
LPWA A W L LG + LL SQP P P H +CC
Sbjct: 3 LPWATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICC 59
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 255 GVPRPNN-SEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGRE 313
G PRP + AP+ SW RP P + P + P G L G E E
Sbjct: 230 GPPRPQLVALAPAPGFSWFPPRPPPGSPWAPAWTPRPTGPDLDTALPGTAEDALEPEAGP 289
Query: 314 EEGCLGGLAECERDREGALDGSGRSAEG 341
E+ AE ER + DG+ + G
Sbjct: 290 EDP-----AEAERTLDRRSDGTWGTEAG 312
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 255 GVPRPNN-SEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGRE 313
G PRP + AP+ SW RP P + P + P G L G E E
Sbjct: 230 GPPRPQLVALAPAPGFSWFPPRPPPGSPWAPAWTPRPTGPDLDTALPGTAEDALEPEAGP 289
Query: 314 EEGCLGGLAECERDREGALDGSGRSAEG 341
E+ AE ER + DG+ + G
Sbjct: 290 EDP-----AEAERTLDRRSDGTWGTEAG 312
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 255 GVPRPNN-SEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGRE 313
G PRP + AP+ SW RP P + P + P G L G E E
Sbjct: 230 GPPRPQLVALAPAPGFSWFPPRPPPGSPWAPAWTPRPTGPDLDTALPGTAEDALEPEAGP 289
Query: 314 EEGCLGGLAECERDREGALDGSGRSAEG 341
E+ AE ER + DG+ + G
Sbjct: 290 EDP-----AEAERTLDRRSDGTWGTEAG 312
>gi|155969701 espin-like [Homo sapiens]
Length = 1005
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 230 LLLLSQPPCFGPPVHALCCRVAH--WRGVPRPNNSEAPSLTLSWRGQRPGPSADEEPRF- 286
LL+ PP F PP R RG P P N SL+ +W G P E+
Sbjct: 332 LLMTPPPPPFPPPPLLATRRSLEDGRRGGPGPGNPSPMSLSPAWPGHPDQPLPREQMTSP 391
Query: 287 GPNQVGTHLSLEPTGAE 303
P ++ T + +P G E
Sbjct: 392 APPRIITSATADPEGTE 408
>gi|164420691 homeodomain interacting protein kinase 2 isoform 2 [Homo
sapiens]
Length = 1171
Score = 30.4 bits (67), Expect = 2.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 260 NNSEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPTGAEER 305
++S + S +++R QRPGP ++ +Q H++ + TG+ R
Sbjct: 985 HSSGSSSGAITYRQQRPGPHFQQQQPLNLSQAQQHITTDRTGSHRR 1030
>gi|164420685 homeodomain interacting protein kinase 2 isoform 1 [Homo
sapiens]
Length = 1198
Score = 30.4 bits (67), Expect = 2.5
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 260 NNSEAPSLTLSWRGQRPGPSADEEPRFGPNQVGTHLSLEPTGAEER 305
++S + S +++R QRPGP ++ +Q H++ + TG+ R
Sbjct: 1012 HSSGSSSGAITYRQQRPGPHFQQQQPLNLSQAQQHITTDRTGSHRR 1057
>gi|239746597 PREDICTED: hypothetical protein XP_002343794 [Homo
sapiens]
Length = 213
Score = 30.4 bits (67), Expect = 2.5
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 235 QPPCFGPPVHALCC----RVAHWRGVPRPNNSEAPSLTLS-WRGQRPGP----------S 279
Q C + +CC RV WR + P N+ A L L RG RP P S
Sbjct: 37 QSVCIQVLIKTVCCSTPPRVVCWRALRVPTNARALGLALKPARGFRPRPQWTYHPSIWES 96
Query: 280 ADEEPRFGPNQVGTHLS-------LEPTGAE 303
++P G + + LS + PTG +
Sbjct: 97 RPQQPDKGSSSASSRLSVHAHRSLISPTGTD 127
>gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo
sapiens]
Length = 905
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 206 HRNLPWAWQAQWPHWSWLQLGTYSLLLLSQ-PPCFGPPVHALCCRVAHWRGVPRPNNSEA 264
H NLP +WPH S + S +SQ PP F PP + R V P+ + A
Sbjct: 138 HPNLPSDKSQRWPHHSQPARASGSFAPISQTPPSFSPPPPLVPPAPEDLRRVSEPDLTGA 197
Query: 265 PSLT 268
S T
Sbjct: 198 VSST 201
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 30.0 bits (66), Expect = 3.2
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 276 PGPSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGCLGGLAECER-----DREG 330
PGP P GP +P GA ++G R G GG + C + + +G
Sbjct: 186 PGP-----PFAGPQPPPPPAPPQPEGAADKGDPRTGAGG----GGGSPCTKATPGSEPKG 236
Query: 331 ALDGSGRSAEGLRGEMHA 348
A +GSG EG GE A
Sbjct: 237 AAEGSGGDGEGPPGEAGA 254
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 30.0 bits (66), Expect = 3.2
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 125 LLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGA---DAFPEHR------MNWATAT 175
L G F H P+RL PGR PGPA AGA A P R ++ A+A
Sbjct: 250 LCRGSSFCGHRPQRLHPGRPLPPQRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASAC 309
Query: 176 SYSTSVQCWAPTSSWRQC 193
+ + W P + + C
Sbjct: 310 PTPLAARSWHPFVANKLC 327
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 30.0 bits (66), Expect = 3.2
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 125 LLTGFLFASHLPERLAPGRFDYIGEGTPGPAREEAGA---DAFPEHR------MNWATAT 175
L G F H P+RL PGR PGPA AGA A P R ++ A+A
Sbjct: 250 LCRGSSFCGHRPQRLHPGRPLPPQRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASAC 309
Query: 176 SYSTSVQCWAPTSSWRQC 193
+ + W P + + C
Sbjct: 310 PTPLAARSWHPFVANKLC 327
>gi|54792090 hypothetical protein LOC23351 [Homo sapiens]
Length = 678
Score = 30.0 bits (66), Expect = 3.2
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 275 RPGPSADEEPRFGPNQVGTHLSLEPT-GAEERGHRREGREEEGCLGGL---AECERDREG 330
R GP+ DE + G+ + P+ G E G +++GREEE GG+ E ER R
Sbjct: 582 RNGPTLDEFLKKPARTQGSSKAQHPSRGFAEHGKQQQGREEEKGSGGIRKTRETERLRRQ 641
Query: 331 ALD 333
L+
Sbjct: 642 LLE 644
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 29.6 bits (65), Expect = 4.2
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 259 PNNSEAPSLTLSWRGQRPG-PSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGC 317
P+ E ++ S G G PS E ++VGT LS P+G E G E+
Sbjct: 1415 PSGEEVLEISASGFGDLSGLPSGGEGLETSASEVGTDLSGLPSGREGLETSASGAED--- 1471
Query: 318 LGGLAECERDREGALDGS---GRSAEGLRGEMHA 348
L GL + D G+ G G+ G G A
Sbjct: 1472 LSGLPSGKEDLVGSASGDLDLGKLPSGTLGSGQA 1505
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 29.6 bits (65), Expect = 4.2
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 259 PNNSEAPSLTLSWRGQRPG-PSADEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGC 317
P+ E ++ S G G PS E ++VGT LS P+G E G E+
Sbjct: 1415 PSGEEVLEISASGFGDLSGLPSGGEGLETSASEVGTDLSGLPSGREGLETSASGAED--- 1471
Query: 318 LGGLAECERDREGALDGS---GRSAEGLRGEMHA 348
L GL + D G+ G G+ G G A
Sbjct: 1472 LSGLPSGKEDLVGSASGDLDLGKLPSGTLGSGQA 1505
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,925,070
Number of Sequences: 37866
Number of extensions: 1014625
Number of successful extensions: 2472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2438
Number of HSP's gapped (non-prelim): 64
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.