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Search of human proteins with 241982804
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo
sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo sapiens] 315 1e-86
gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo sapiens] 132 1e-31
gi|13376856 solute carrier family 19, member 3 [Homo sapiens] 53 8e-08
gi|27734719 solute carrier family 19, member 2 [Homo sapiens] 48 4e-06
gi|34808710 solute carrier family 19 member 1 [Homo sapiens] 39 0.002
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 35 0.031
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 31 0.45
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 30 0.59
gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens] 30 1.00
gi|55741643 kelch-like 14 [Homo sapiens] 29 1.3
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 29 1.7
gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo... 29 1.7
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 29 1.7
gi|41281612 zinc finger protein 828 [Homo sapiens] 29 1.7
gi|116805330 small conductance calcium-activated potassium chann... 28 2.2
gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens] 28 2.2
gi|32880206 cadherin-like 24 isoform 1 [Homo sapiens] 28 2.2
gi|156151371 Kruppel-like factor 3 (basic) [Homo sapiens] 28 2.2
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 28 2.9
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 28 2.9
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 28 2.9
gi|109715825 zinc finger protein 690 [Homo sapiens] 28 2.9
gi|13128980 proline rich 14 [Homo sapiens] 28 2.9
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 5.0
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 27 5.0
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 27 5.0
gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo sap... 27 5.0
gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo sap... 27 5.0
gi|189217919 protein associated with topoisomerase II homolog 1 ... 27 5.0
>gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo sapiens]
Length = 150
Score = 315 bits (806), Expect = 1e-86
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60
MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS
Sbjct: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60
Query: 61 FQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGHGLCHPTAEASAETLSSTALNRPSV 120
FQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGHGLCHPTAEASAETLSSTALNRPSV
Sbjct: 61 FQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGHGLCHPTAEASAETLSSTALNRPSV 120
Query: 121 REGACNEKSTENKKPQDSVLWSHSRWFQGN 150
REGACNEKSTENKKPQDSVLWSHSRWFQGN
Sbjct: 121 REGACNEKSTENKKPQDSVLWSHSRWFQGN 150
>gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo
sapiens]
Length = 96
Score = 132 bits (331), Expect = 1e-31
Identities = 68/85 (80%), Positives = 72/85 (84%), Gaps = 5/85 (5%)
Query: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60
MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS
Sbjct: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60
Query: 61 FQNLL----SPS-EKLEPWDPGMRK 80
FQN +PS + W G+R+
Sbjct: 61 FQNCFTCRTAPSLVMVLSWKSGVRR 85
>gi|13376856 solute carrier family 19, member 3 [Homo sapiens]
Length = 496
Score = 53.1 bits (126), Expect = 8e-08
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQ 39
+E YAL FGIN FIAL+IQ I+T+ VVD +GL LPV IQ
Sbjct: 400 VERYALVFGINTFIALVIQTIMTVIVVDQRGLNLPVSIQ 438
>gi|27734719 solute carrier family 19, member 2 [Homo sapiens]
Length = 497
Score = 47.8 bits (112), Expect = 4e-06
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 1 MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQ 39
ME YAL FG+N FIAL +Q ++T+ VVD GLGL + Q
Sbjct: 417 MERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQ 455
>gi|34808710 solute carrier family 19 member 1 [Homo sapiens]
Length = 591
Score = 38.9 bits (89), Expect = 0.002
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 5 ALTFGINPFIALMIQPIVTMTVVDNQGLGLPV 36
AL FG+N F A +++ I+T V D +GLGLPV
Sbjct: 397 ALVFGVNTFFATIVKTIITFIVSDVRGLGLPV 428
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 34.7 bits (78), Expect = 0.031
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 39 QHKAKPSPKASQMLPPD--LGPPSFQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGH 96
Q +A+ +A Q LPPD PP + +P E EP M++ Q L + A
Sbjct: 14 QQRARQELEARQQLPPDPPAAPPG-RARAAPDEDREPESARMQR--AQMAALAAMRAAAA 70
Query: 97 GLCHPTAEASAETLSSTALNRPSVREG 123
GL HP + +E + + REG
Sbjct: 71 GLGHPASPGGSEDGPPGSEEEDAAREG 97
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 30.8 bits (68), Expect = 0.45
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 38 IQHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKL 71
+ K+KPSP+ Q L + PP Q +L PSEK+
Sbjct: 68 VPDKSKPSPQKDQALGDGIAPP--QKVLFPSEKI 99
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 30.4 bits (67), Expect = 0.59
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 57 GPPSFQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGHGLCHPTAEASAETLSSTALN 116
G S + +P ++ M + C L PA G+ P A A ST L
Sbjct: 856 GGMSMPLMRAPDSRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPLR 915
Query: 117 RPSVREGACNEKSTE 131
RPS AC STE
Sbjct: 916 RPS----ACETVSTE 926
>gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens]
Length = 350
Score = 29.6 bits (65), Expect = 1.00
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 44 PSPKASQMLPPDLGPPSFQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGHGLCHPTA 103
P+P SQ P PP +L++PS P + T + IH G P
Sbjct: 179 PTPSLSQTTLPTYVPPFSTSLVTPSTHTVITPPRTQMATSAS-----IHSTPTGTIPPPT 233
Query: 104 EASAETLSSTALNRPSVREGACNEKSTENKKPQDSVLWSHS 144
A + TA R G S+ N + L SH+
Sbjct: 234 TLKATGSTHTAPTRTLTTSGTSQALSSLNTAKTSTSLHSHT 274
>gi|55741643 kelch-like 14 [Homo sapiens]
Length = 628
Score = 29.3 bits (64), Expect = 1.3
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 31 GLGLPVDIQHKAKPSPKASQMLPP--DLGPPSFQNLLSPSEKLEPWDPGMRKLTVQTCG- 87
GLG P D Q + P Q PP + G PS SP +KL + L +Q C
Sbjct: 77 GLGAPKDQQQPPQQQPSQQQQPPPQEEPGTPS----SSPDDKLLTSPRAINNLVLQGCSS 132
Query: 88 ------LTFIHPAGHGLCHPTAEASAETLS-STALNRPSV 120
L +++ A L T E E LS S L+ P V
Sbjct: 133 IGLRLVLEYLYTANVTLSLDTVE---EVLSVSKILHIPQV 169
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 28.9 bits (63), Expect = 1.7
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 41 KAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEP-WDPGMRKLTVQTCGLTFIHPA--GHG 97
K+ P P A PP PP SP + P W ++ G FI+P+ G G
Sbjct: 73 KSSPPPSAGPTPPPSSRPPP-----SPPRRRRPAWLQDEAEVAAALAGYGFINPSSTGEG 127
Query: 98 LCHPTAEA--SAETLSSTALNRPSVREGACNEKSTENKKP 135
P+ + + ++ P R G E ++P
Sbjct: 128 PARPSTQTLRRSGAFPCESVGVPGARPGRGAEGRPARRRP 167
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 28.9 bits (63), Expect = 1.7
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 41 KAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEP-WDPGMRKLTVQTCGLTFIHPA--GHG 97
K+ P P A PP PP SP + P W ++ G FI+P+ G G
Sbjct: 73 KSSPPPSAGPTPPPSSRPPP-----SPPRRRRPAWLQDEAEVAAALAGYGFINPSSTGEG 127
Query: 98 LCHPTAEA--SAETLSSTALNRPSVREGACNEKSTENKKP 135
P+ + + ++ P R G E ++P
Sbjct: 128 PARPSTQTLRRSGAFPCESVGVPGARPGRGAEGRPARRRP 167
>gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo
sapiens]
Length = 321
Score = 28.9 bits (63), Expect = 1.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 35 PVDIQHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEPWDP 76
P ++ + +P P P L PPS +L PS KL P +P
Sbjct: 14 PSELDNPFQPPPAYEPPAPAPLPPPSAPSL-QPSRKLSPTEP 54
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 28.9 bits (63), Expect = 1.7
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 15 ALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQM-------LPPDLGPPSFQN---L 64
AL P +TV + G+ +Q K PSP+A + LPPDL Q
Sbjct: 1864 ALHCPPAAVVTVTPSPE-GVFSSLQAKPSPSPRAELLVPSLEGALPPDLDTSEDQQATAA 1922
Query: 65 LSPSEK--LEPWDPGMRKLTVQTCGLTFIHPAGHGLCHPTAEASAE 108
+ P E LEP D G + + + HP+ L ++E
Sbjct: 1923 IIPPEPSYLEPLDEGPFSAVITEEPVEWAHPSEQALASSLIGGTSE 1968
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 28.9 bits (63), Expect = 1.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 42 AKPSPKASQMLPPDLGPPSFQNLLSP--SEKLEPWDP 76
+ P P+ P LGPPS + SP + EPW P
Sbjct: 223 SNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGP 259
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 39 QHKAKPSPKAS--QMLPPDLGP--PSFQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPA 94
Q P+P A+ Q L P L P P Q ++ + P + +HP
Sbjct: 40 QQPPPPAPPAAPQQPLGPSLQPQPPQLQQQQQQQQQQQQQQPPHPLSQLAQLQSQPVHP- 98
Query: 95 GHGLCH--PTAEASAETLSSTALNRPSVREGA 124
GL H PTA + + +STA+ PS R+G+
Sbjct: 99 --GLLHSSPTAFRAPPSSNSTAILHPSSRQGS 128
>gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens]
Length = 781
Score = 28.5 bits (62), Expect = 2.2
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 48 ASQMLPPDLGPPSFQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGH-GLCHPTAEAS 106
AS +LP PP L P E + P + T + P G C P A S
Sbjct: 536 ASLLLPSRPAPPRHAPYLVPIELWDWGQPALSSTATVTVSVCRCQPDGSVASCWPEAHLS 595
Query: 107 AETLSSTAL 115
A LS+ AL
Sbjct: 596 AAGLSTGAL 604
>gi|32880206 cadherin-like 24 isoform 1 [Homo sapiens]
Length = 819
Score = 28.5 bits (62), Expect = 2.2
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 48 ASQMLPPDLGPPSFQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPAGH-GLCHPTAEAS 106
AS +LP PP L P E + P + T + P G C P A S
Sbjct: 574 ASLLLPSRPAPPRHAPYLVPIELWDWGQPALSSTATVTVSVCRCQPDGSVASCWPEAHLS 633
Query: 107 AETLSSTAL 115
A LS+ AL
Sbjct: 634 AAGLSTGAL 642
>gi|156151371 Kruppel-like factor 3 (basic) [Homo sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 2.2
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 35 PVDIQHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEPWDPGMRKLTVQTCGLTFIHPA 94
PVD+ + SP ++ P L PS SP + P ++K + + G + P
Sbjct: 61 PVDLTVNKRSSPPSAGNSPSSLKFPSSHRRASPGLSMPSSSPPIKKYSPPSPG---VQPF 117
Query: 95 GHGLCHPTAEASAETLSSTALNRPSV 120
G L P A+A LS + P +
Sbjct: 118 GVPLSMPPVMAAA--LSRHGIRSPGI 141
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 28.1 bits (61), Expect = 2.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 39 QHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEPW 74
Q K P M+PP PPS Q PS L PW
Sbjct: 465 QGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPW 500
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 28.1 bits (61), Expect = 2.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 39 QHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEPW 74
Q K P M+PP PPS Q PS L PW
Sbjct: 465 QGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPW 500
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 28.1 bits (61), Expect = 2.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 39 QHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEPW 74
Q K P M+PP PPS Q PS L PW
Sbjct: 465 QGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPW 500
>gi|109715825 zinc finger protein 690 [Homo sapiens]
Length = 852
Score = 28.1 bits (61), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 38 IQHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLEPW 74
++ + + PK + PDLGP Q ++P EKL+P+
Sbjct: 138 VEPQPRGVPKKERARSPDLGP---QEQMNPKEKLKPF 171
>gi|13128980 proline rich 14 [Homo sapiens]
Length = 585
Score = 28.1 bits (61), Expect = 2.9
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 54 PDLGPPSFQNLLSPSEKLEPWDPGMRKLTV------------QTCGLTFIHPAGHGLCHP 101
PDLGPP P +P P R+ TV + C + P G P
Sbjct: 335 PDLGPPGPGTCTWPPAPPQPSRPRPRRHTVGGGEMARAPPPPRPCLRKEVFPLGGVGASP 394
Query: 102 TAEASAETLSSTALNRPS-VREGACNEKSTENKKPQDS 138
+ S + +ST+ + P+ R G ST+ K+P+ S
Sbjct: 395 SLTTSCSSTASTSFSEPAEPRLG-----STKGKEPRAS 427
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 27.3 bits (59), Expect = 5.0
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 33 GLPVDIQHKAKPSPKASQML------------PPDLGPPSFQNLL--SPSEKLEPWDPGM 78
G P H ++P PK Q L P LGP S L SPS L+ P
Sbjct: 261 GTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPT 320
Query: 79 RKLTVQTCGLT--FIHPAGHGLCHPTAEASAETLSSTALNRPS 119
T + LT P P+A S +TL S PS
Sbjct: 321 LPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPS 363
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 27.3 bits (59), Expect = 5.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 35 PVDIQHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLE-PWDP 76
P + H A+ + S+ PP GPPS SPS +L+ P DP
Sbjct: 21 PSSLIHPARSNQPPSRTCPPLPGPPSRSR--SPSSRLKLPADP 61
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 27.3 bits (59), Expect = 5.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 35 PVDIQHKAKPSPKASQMLPPDLGPPSFQNLLSPSEKLE-PWDP 76
P + H A+ + S+ PP GPPS SPS +L+ P DP
Sbjct: 21 PSSLIHPARSNQPPSRTCPPLPGPPSRSR--SPSSRLKLPADP 61
>gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1087
Score = 27.3 bits (59), Expect = 5.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 44 PSPKASQMLPPDLGPPSFQNLLSPSEKLEPWDPGMRKLTVQTC 86
PSPK +P DL S NL S W P RK + +C
Sbjct: 478 PSPKEQPPMPQDLMDVSVSNLPS------LWQPSPRKSSCSSC 514
>gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo
sapiens]
Length = 1148
Score = 27.3 bits (59), Expect = 5.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 44 PSPKASQMLPPDLGPPSFQNLLSPSEKLEPWDPGMRKLTVQTC 86
PSPK +P DL S NL S W P RK + +C
Sbjct: 478 PSPKEQPPMPQDLMDVSVSNLPS------LWQPSPRKSSCSSC 514
>gi|189217919 protein associated with topoisomerase II homolog 1
[Homo sapiens]
Length = 770
Score = 27.3 bits (59), Expect = 5.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 2 EDYALTFGINPFIALMIQ-PIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60
+D L ++PF L+ P V++T + Q + LP A +P + +L G
Sbjct: 629 QDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNPHLTAVLQNKFGLSL 688
Query: 61 FQNLLSPSEKLEPWDP 76
LLS E L+ DP
Sbjct: 689 LLILLSRGEDLQSSDP 704
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,652,736
Number of Sequences: 37866
Number of extensions: 323897
Number of successful extensions: 1365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 53
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.