Guide to the Human Genome
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Name: SLC19A3 Sequence: fasta or formatted (496aa) NCBI GI: 13376856
Description:

solute carrier family 19, member 3

Referenced in:

Solute Carrier Families
Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         37           2
 C cysteine            1.2          6           1
 D aspartate           2.2         11           1
 E glutamate           4.4         22           3
 F phenylalanine       6.5         32           2
 G glycine             4.8         24           2
 H histidine           1.0          5           1
 I isoleucine          6.7         33           2
 K lysine              4.0         20           2
 L leucine            10.7         53           4
 M methionine          2.8         14           2
 N asparagine          4.0         20           1
 P proline             4.4         22           1
 Q glutamine           3.6         18           1
 R arginine            2.0         10           1
 S serine             10.3         51           3
 T threonine           5.0         25           1
 V valine             10.3         51           2
 W tryptophan          2.0         10           2
 Y tyrosine            6.5         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 19, member 3 
SLC19A2               0.478   solute carrier family 19, member 2 
SLC19A1               0.349   solute carrier family 19 member 1 
C2orf83               0.029   hypothetical protein LOC56918 isoform 2 
C2orf83               0.029   hypothetical protein LOC56918 isoform 1 
SLC9A6                0.008   solute carrier family 9 (sodium/hydrogen exchanger)...
SLC9A6                0.007   solute carrier family 9 (sodium/hydrogen exchanger), ...
NIPAL2                0.006   NIPA-like domain containing 2 
TMEM87A               0.006   transmembrane protein 87A isoform 1 
LOC100287219          0.005   PREDICTED: hypothetical protein XP_002342512, parti...
SLC13A2               0.005   solute carrier family 13, member 2 isoform c 
SLC13A2               0.005   solute carrier family 13, member 2 isoform b 
SLC13A2               0.005   solute carrier family 13, member 2 isoform a 
CC2D2A                0.005   coiled-coil and C2 domain containing 2A isoform a [...
CC2D2A                0.005   coiled-coil and C2 domain containing 2A isoform b [...
RPL6                  0.005   ribosomal protein L6 
RPL6                  0.005   ribosomal protein L6 
TRAFD1                0.004   TRAF-type zinc finger domain containing 1 
TRAFD1                0.004   TRAF-type zinc finger domain containing 1 
LARP1                 0.004   la related protein isoform 2 
LARP1                 0.004   la related protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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