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Search of human proteins with 239758061
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758061 PREDICTED: similar to hCG1992776 [Homo sapiens]
(206 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758061 PREDICTED: similar to hCG1992776 [Homo sapiens] 416 e-117
gi|239747887 PREDICTED: hypothetical protein XP_002346465 [Homo ... 416 e-117
gi|4758404 FSHD region gene 1 [Homo sapiens] 385 e-107
gi|239747131 PREDICTED: hypothetical protein XP_002343920 [Homo ... 188 2e-48
gi|239758069 PREDICTED: similar to FSHD region gene 1 isoform 2 ... 182 2e-46
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 32 0.29
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 32 0.38
gi|118572603 ubinuclein 1 [Homo sapiens] 31 0.65
gi|118572601 ubinuclein 1 [Homo sapiens] 31 0.65
gi|17149828 NMDA receptor regulated 1 [Homo sapiens] 31 0.85
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 30 1.4
gi|9966791 fascin 3 [Homo sapiens] 30 1.4
gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo... 30 1.9
gi|192807309 TNFAIP3 interacting protein 3 [Homo sapiens] 29 2.5
gi|192807305 TNFAIP3 interacting protein 3 [Homo sapiens] 29 2.5
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 29 2.5
gi|154426264 ubiquitin protein ligase E3 component n-recognin 7 ... 29 2.5
gi|154426322 ubiquitin protein ligase E3 component n-recognin 7 ... 29 2.5
gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens] 28 5.5
gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens] 28 5.5
gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens] 28 5.5
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 28 5.5
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 28 5.5
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 5.5
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 5.5
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 5.5
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 5.5
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 5.5
gi|219555661 intraflagellar transport 81-like isoform 1 [Homo sa... 28 5.5
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 28 5.5
>gi|239758061 PREDICTED: similar to hCG1992776 [Homo sapiens]
Length = 206
Score = 416 bits (1070), Expect = e-117
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MLVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVK 60
MLVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVK
Sbjct: 1 MLVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVK 60
Query: 61 LSDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSE 120
LSDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSE
Sbjct: 61 LSDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSE 120
Query: 121 AEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKL 180
AEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKL
Sbjct: 121 AEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKL 180
Query: 181 KISKEESKILKKAQKDGFLHETLLDR 206
KISKEESKILKKAQKDGFLHETLLDR
Sbjct: 181 KISKEESKILKKAQKDGFLHETLLDR 206
>gi|239747887 PREDICTED: hypothetical protein XP_002346465 [Homo
sapiens]
Length = 206
Score = 416 bits (1070), Expect = e-117
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MLVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVK 60
MLVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVK
Sbjct: 1 MLVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVK 60
Query: 61 LSDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSE 120
LSDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSE
Sbjct: 61 LSDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSE 120
Query: 121 AEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKL 180
AEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKL
Sbjct: 121 AEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKL 180
Query: 181 KISKEESKILKKAQKDGFLHETLLDR 206
KISKEESKILKKAQKDGFLHETLLDR
Sbjct: 181 KISKEESKILKKAQKDGFLHETLLDR 206
>gi|4758404 FSHD region gene 1 [Homo sapiens]
Length = 258
Score = 385 bits (988), Expect = e-107
Identities = 189/205 (92%), Positives = 197/205 (96%)
Query: 2 LVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKL 61
+V IWWTVTNFGEISGTIAIEMD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKL
Sbjct: 43 IVGIWWTVTNFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKL 102
Query: 62 SDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEA 121
SDSRI LKSGYGKYLGINSD LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA
Sbjct: 103 SDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEA 162
Query: 122 EDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLK 181
DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGN+KQCEINYVKKFQSFQDHKLK
Sbjct: 163 GDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLK 222
Query: 182 ISKEESKILKKAQKDGFLHETLLDR 206
ISKE+SKILKKA+KDGFLHETLLDR
Sbjct: 223 ISKEDSKILKKARKDGFLHETLLDR 247
>gi|239747131 PREDICTED: hypothetical protein XP_002343920 [Homo
sapiens]
Length = 156
Score = 188 bits (478), Expect = 2e-48
Identities = 93/104 (89%), Positives = 98/104 (94%)
Query: 103 IGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIK 162
+GKMAL SN CFIR +EA DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGN+K
Sbjct: 44 LGKMALLASNGCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVK 103
Query: 163 QCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETLLDR 206
QCEINYVKKFQSFQ+HKLKISKE+SKILKKAQKDGFL ETLLDR
Sbjct: 104 QCEINYVKKFQSFQEHKLKISKEDSKILKKAQKDGFLQETLLDR 147
>gi|239758069 PREDICTED: similar to FSHD region gene 1 isoform 2
[Homo sapiens]
Length = 124
Score = 182 bits (462), Expect = 2e-46
Identities = 95/110 (86%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 97 WEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEE 156
WE K GKMAL S+SCFIR +EA DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPE
Sbjct: 16 WELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPE- 74
Query: 157 DKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETLLDR 206
DKGN+KQ EINYVKKFQSFQDHK KISKE+SKILKKAQKDGFLHETLLDR
Sbjct: 75 DKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETLLDR 124
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 32.3 bits (72), Expect = 0.29
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 118 YSEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQD 177
YSE ED EA+ ++ K ++E K+K++ EE K K+ E+ ++ + ++
Sbjct: 344 YSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEE--EEMK---KEEEMKKKEEKEEEEE 398
Query: 178 HKLKISKEESKILKKAQKDG 197
++K +EE +I K +++G
Sbjct: 399 EEMKQKEEEEEIRNKNEEEG 418
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 32.0 bits (71), Expect = 0.38
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 122 EDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINY----VKKFQSFQD 177
E + K + A +E+ I+ + E KK+++ +E K IK+ E VKK ++
Sbjct: 652 EKEKPKKEVAKKEDKTPIK---KEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKE 708
Query: 178 HKLKISKEESKILKKAQKD 196
K ++ KEE K +KK +K+
Sbjct: 709 VKKEVKKEEKKEVKKEEKE 727
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 31.2 bits (69), Expect = 0.65
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 25/157 (15%)
Query: 54 EQFSAVKLSDSRIT--LKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTS 111
E++ K RI + GYG + + + S+A K G +++
Sbjct: 110 EKYGGKKRRKDRIQDLIDMGYG----YDESDSFIDNSEAYDELVPASLTTKYGGFYINSG 165
Query: 112 NSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAER-ETKKKDDIPEEDKGNIKQCEINYVK 170
F + SE+ED K K + K++ E+ + KKKDD +++K + K
Sbjct: 166 TLQFRQASESEDDFIKEKKKKSPKKRKLKEGGEKIKKKKKDDTYDKEKKSKK-------S 218
Query: 171 KFQSFQDHKLKISKEESK-----------ILKKAQKD 196
KF L SKE+ K +LKK QK+
Sbjct: 219 KFSKAGFTALNASKEKKKKKYSGALSVKEMLKKFQKE 255
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 31.2 bits (69), Expect = 0.65
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 25/157 (15%)
Query: 54 EQFSAVKLSDSRIT--LKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTS 111
E++ K RI + GYG + + + S+A K G +++
Sbjct: 110 EKYGGKKRRKDRIQDLIDMGYG----YDESDSFIDNSEAYDELVPASLTTKYGGFYINSG 165
Query: 112 NSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAER-ETKKKDDIPEEDKGNIKQCEINYVK 170
F + SE+ED K K + K++ E+ + KKKDD +++K + K
Sbjct: 166 TLQFRQASESEDDFIKEKKKKSPKKRKLKEGGEKIKKKKKDDTYDKEKKSKK-------S 218
Query: 171 KFQSFQDHKLKISKEESK-----------ILKKAQKD 196
KF L SKE+ K +LKK QK+
Sbjct: 219 KFSKAGFTALNASKEKKKKKYSGALSVKEMLKKFQKE 255
>gi|17149828 NMDA receptor regulated 1 [Homo sapiens]
Length = 866
Score = 30.8 bits (68), Expect = 0.85
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 120 EAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHK 179
E ++ EA + ++E+ K+R+ +R +KK I EE K K+ + KK + D +
Sbjct: 576 ENKEHEADTANMSDKELKKLRN-KQRRAQKKAQIEEEKKNAEKEKQQRNQKKKKDDDDEE 634
Query: 180 LKISKEESKILKKAQKDGFLHETL 203
+ KEE K A+ + L E +
Sbjct: 635 IGGPKEELIPEKLAKVETPLEEAI 658
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 120 EAEDIEAKSKTAG-EEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDH 178
EA +E T+G EEE + E E ++ + E++ +++ E ++ +FQ H
Sbjct: 390 EASGMEDDEDTSGLEEEEEEPSGLEEEEEEEASGLEEDEASGLEEEEEQTSEQDSTFQGH 449
Query: 179 KLKISKEESKILKKAQKDGFL 199
L +K E +I + F+
Sbjct: 450 TLVDAKHEVEITSDGMETTFI 470
>gi|9966791 fascin 3 [Homo sapiens]
Length = 498
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 34 NGLFTLGAPHKEV--DEGPSPPEQFSAVKLSDSRITLKSGYGKYLGINSDELVVGRSDAI 91
NG + H+ V D P + F + + RI L+S G++LGI + L++
Sbjct: 314 NGYYLSQRRHRAVMADGHPLESDTFFRMHWNCGRIILQSCRGRFLGIAPNSLLMANVILP 373
Query: 92 GPREQWEPVF 101
GP E++ +F
Sbjct: 374 GPNEEFGILF 383
>gi|4506581 retinitis pigmentosa GTPase regulator isoform A [Homo
sapiens]
Length = 815
Score = 29.6 bits (65), Expect = 1.9
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 121 AEDIEAKSKTAGEEEMIK--IRSCAERETKKKDD-----IPEEDKGNIKQ---CEINYVK 170
AE++E+K KT G++E + S E + DD I +++K N+++ CE N
Sbjct: 656 AENVESKKKTVGDDESVPTGYHSKTEGAERTNDDSSAETIEKKEKANLEERAICEYNENP 715
Query: 171 KFQSFQD---HKLKISKEE----SKILKKAQK 195
K D L+I + SK +KK +K
Sbjct: 716 KGYMLDDADSSSLEILENSETTPSKDMKKTKK 747
>gi|192807309 TNFAIP3 interacting protein 3 [Homo sapiens]
Length = 325
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 87 RSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERE 146
R + + +QW+ F+ K E + E K+K E + R +
Sbjct: 47 RKELLEVNQQWDQQFRSMK-----------ELYERKVAELKTKLDAAERFLSTREKDPHQ 95
Query: 147 TKKKDDIPEED--KGNIKQCEINYVKKFQSFQDHKLKISKEESKILK 191
++KDD ED + ++ + + +K + + +L KEE+K+LK
Sbjct: 96 RQRKDDRQREDDRQRDLTRDRLQREEKEKERLNEELHELKEENKLLK 142
>gi|192807305 TNFAIP3 interacting protein 3 [Homo sapiens]
Length = 325
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 87 RSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERE 146
R + + +QW+ F+ K E + E K+K E + R +
Sbjct: 47 RKELLEVNQQWDQQFRSMK-----------ELYERKVAELKTKLDAAERFLSTREKDPHQ 95
Query: 147 TKKKDDIPEED--KGNIKQCEINYVKKFQSFQDHKLKISKEESKILK 191
++KDD ED + ++ + + +K + + +L KEE+K+LK
Sbjct: 96 RQRKDDRQREDDRQRDLTRDRLQREEKEKERLNEELHELKEENKLLK 142
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 29.3 bits (64), Expect = 2.5
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 119 SEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP-----EEDKGNIKQC--------- 164
S ED+ A+S+ +E IK + +ER + P +E +G ++Q
Sbjct: 91 SRVEDLLAQSRAERDELAIKYNAVSERLEQALRLEPGELETQEPRGLVRQSVELRRQLQE 150
Query: 165 -EINYVKKFQSFQDHKLK----ISKEESKILKKAQKDGFLHETLLDR 206
+ +Y +K Q++Q+ + + + + + KIL+ ++ L + LL+R
Sbjct: 151 EQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLER 197
>gi|154426264 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 3 [Homo sapiens]
Length = 349
Score = 29.3 bits (64), Expect = 2.5
Identities = 9/35 (25%), Positives = 25/35 (71%)
Query: 132 GEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEI 166
G++E+IK + +++ K+D+PE+ K ++++ ++
Sbjct: 143 GDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKV 177
>gi|154426322 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 2 [Homo sapiens]
Length = 425
Score = 29.3 bits (64), Expect = 2.5
Identities = 9/35 (25%), Positives = 25/35 (71%)
Query: 132 GEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEI 166
G++E+IK + +++ K+D+PE+ K ++++ ++
Sbjct: 219 GDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKV 253
>gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens]
Length = 870
Score = 28.1 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 163 QCEINYVKKFQSFQDHKLKISKEESKILKK 192
QC+++ K Q+++DHKL I E + K
Sbjct: 612 QCDLDLYKSLQAWKDHKLHIDHEIETLQNK 641
>gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens]
Length = 867
Score = 28.1 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 163 QCEINYVKKFQSFQDHKLKISKEESKILKK 192
QC+++ K Q+++DHKL I E + K
Sbjct: 612 QCDLDLYKSLQAWKDHKLHIDHEIETLQNK 641
>gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens]
Length = 870
Score = 28.1 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 163 QCEINYVKKFQSFQDHKLKISKEESKILKK 192
QC+++ K Q+++DHKL I E + K
Sbjct: 612 QCDLDLYKSLQAWKDHKLHIDHEIETLQNK 641
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 28.1 bits (61), Expect = 5.5
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 95 EQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP 154
++ + +++I + S F+ E + +E K +K + +E++ K+K +
Sbjct: 1460 DETQHIWRILQATHPPSEDRFLHIMEDDSMEEKPLK------VKGKDSSEKKRKRKLEKV 1513
Query: 155 EEDKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQK 195
E+ G KQ + +KK + KLK+ ++SK L K K
Sbjct: 1514 EQLFGEGKQ-KSKELKKMDKPRKKKLKLGADKSKELNKLAK 1553
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 28.1 bits (61), Expect = 5.5
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 95 EQWEPVFKIGKMALSTSNSCFIRYSEAEDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP 154
++ + +++I + S F+ E + +E K +K + +E++ K+K +
Sbjct: 1465 DETQHIWRILQATHPPSEDRFLHIMEDDSMEEKPLK------VKGKDSSEKKRKRKLEKV 1518
Query: 155 EEDKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQK 195
E+ G KQ + +KK + KLK+ ++SK L K K
Sbjct: 1519 EQLFGEGKQ-KSKELKKMDKPRKKKLKLGADKSKELNKLAK 1558
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 149 KKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETL 203
+K D+ E + K C N +KF+ FQ+ +SKE + L+ A++ +H++L
Sbjct: 2984 QKVDMVTEQLHSKKFCLENMTQKFKEFQE----VSKESKRQLQCAKEQLDIHDSL 3034
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 149 KKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETL 203
+K D+ E + K C N +KF+ FQ+ +SKE + L+ A++ +H++L
Sbjct: 2995 QKVDMVTEQLHSKKFCLENMTQKFKEFQE----VSKESKRQLQCAKEQLDIHDSL 3045
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 149 KKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETL 203
+K D+ E + K C N +KF+ FQ+ +SKE + L+ A++ +H++L
Sbjct: 3133 QKVDMVTEQLHSKKFCLENMTQKFKEFQE----VSKESKRQLQCAKEQLDIHDSL 3183
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 149 KKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETL 203
+K D+ E + K C N +KF+ FQ+ +SKE + L+ A++ +H++L
Sbjct: 2955 QKVDMVTEQLHSKKFCLENMTQKFKEFQE----VSKESKRQLQCAKEQLDIHDSL 3005
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 149 KKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETL 203
+K D+ E + K C N +KF+ FQ+ +SKE + L+ A++ +H++L
Sbjct: 2629 QKVDMVTEQLHSKKFCLENMTQKFKEFQE----VSKESKRQLQCAKEQLDIHDSL 2679
>gi|219555661 intraflagellar transport 81-like isoform 1 [Homo
sapiens]
Length = 676
Score = 28.1 bits (61), Expect = 5.5
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 122 EDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDH--- 178
E +EA E E +KI + E +K EE+K + + + K+ ++ Q+H
Sbjct: 146 ELMEAFKTLHKEYEQLKISGFSTAEIRKDISAMEEEKDQLIKRVEHLKKRVETAQNHQWM 205
Query: 179 -----KLKISKEESKIL---KKAQKDGFLH 200
+L++ KE + L K+ QK+ H
Sbjct: 206 LKIARQLRVEKEREEYLAQQKQEQKNQLFH 235
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 28.1 bits (61), Expect = 5.5
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 122 EDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDH--- 178
E +EA E E +KI + E +K EE+K + + + K+ ++ Q+H
Sbjct: 146 ELMEAFKTLHKEYEQLKISGFSTAEIRKDISAMEEEKDQLIKRVEHLKKRVETAQNHQWM 205
Query: 179 -----KLKISKEESKIL---KKAQKDGFLH 200
+L++ KE + L K+ QK+ H
Sbjct: 206 LKIARQLRVEKEREEYLAQQKQEQKNQLFH 235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,697,442
Number of Sequences: 37866
Number of extensions: 337334
Number of successful extensions: 1069
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 85
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.