Search of human proteins with 239758005

Search of human proteins with 239758005

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo
sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo ...   271   1e-73
gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]           244   1e-65
gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo ...   226   4e-60
gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]           215   6e-57
gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]           160   2e-40
gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]           120   3e-28
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            61   2e-10
gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]           59   1e-09
gi|109689695 transient receptor potential cation channel, subfam...    30   0.50 
gi|11141889 WW45 protein [Homo sapiens]                                29   1.1  
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    29   1.1  
gi|110349719 titin isoform N2-A [Homo sapiens]                         28   2.5  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      28   2.5  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      28   2.5  
gi|110349715 titin isoform N2-B [Homo sapiens]                         28   2.5  
gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo sa...    28   2.5  
gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo sa...    28   2.5  
gi|54633319 PDZ domain-containing guanine nucleotide exchange fa...    27   3.2  
gi|16306568 poly(A) polymerase gamma [Homo sapiens]                    27   3.2  
gi|9624969 butyrophilin-like 2 [Homo sapiens]                          27   4.2  
gi|110347414 fibroblast growth factor receptor substrate 2 [Homo...    27   4.2  
gi|110347408 fibroblast growth factor receptor substrate 2 [Homo...    27   4.2  
gi|219842266 usherin isoform B [Homo sapiens]                          27   5.5  
gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]           26   7.2  
gi|102469034 janus kinase 1 [Homo sapiens]                             26   9.4  
gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens]        26   9.4  
gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens]        26   9.4  

>gi|239758005 PREDICTED: hypothetical protein XP_002346265 [Homo
           sapiens]
          Length = 127

 Score =  271 bits (692), Expect = 1e-73
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60
           MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI
Sbjct: 1   MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60

Query: 61  IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQM 120
           IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQM
Sbjct: 61  IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQM 120

Query: 121 EMKGVII 127
           EMKGVII
Sbjct: 121 EMKGVII 127


>gi|239758079 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  244 bits (623), Expect = 1e-65
 Identities = 115/127 (90%), Positives = 120/127 (94%)

Query: 1   MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60
           MESSSNELNA+IEWSRMESSSNG EWNHRIESNGIIIEWNRM ST NGKKRNYRMESKRI
Sbjct: 1   MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGIIIEWNRMVSTPNGKKRNYRMESKRI 60

Query: 61  IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQM 120
            E TRMESSNGMEWNNPWT+MQSSS+ IEWNHRMDSNGIIIERNRME SS+GNEWNHH+M
Sbjct: 61  FERTRMESSNGMEWNNPWTRMQSSSNGIEWNHRMDSNGIIIERNRMESSSDGNEWNHHRM 120

Query: 121 EMKGVII 127
           EMKGVII
Sbjct: 121 EMKGVII 127


>gi|239758003 PREDICTED: hypothetical protein XP_002346264 [Homo
           sapiens]
          Length = 135

 Score =  226 bits (576), Expect = 4e-60
 Identities = 108/127 (85%), Positives = 115/127 (90%)

Query: 1   MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60
           MESSSNELNA+IEWSRMESSSNG EWNHRIESNGI I+W RMESTSNG KRNYRMESKR 
Sbjct: 1   MESSSNELNAIIEWSRMESSSNGKEWNHRIESNGINIKWTRMESTSNGIKRNYRMESKRS 60

Query: 61  IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQM 120
           IEWTRMESSNGMEWNNP T+MQSSS+ IEWNHRMDSNGII ERNRME SSNGNE +HH M
Sbjct: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIITERNRMESSSNGNERSHHLM 120

Query: 121 EMKGVII 127
           E+ G+II
Sbjct: 121 ELHGIII 127



 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 21/36 (58%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 11  VIEWSRMESSSNGMEWNHRI-ESNGIIIEWNRMEST 45
           + E +RMESSSNG E +H + E +GIII+WNRM S+
Sbjct: 100 ITERNRMESSSNGNERSHHLMELHGIIIKWNRMVSS 135


>gi|239758025 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  215 bits (548), Expect = 6e-57
 Identities = 102/115 (88%), Positives = 107/115 (93%)

Query: 1   MESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI 60
           MESSSNELNA+IEWSRMESS+NG EWNHRIESNGI IEW RMESTSNG KRNYRMESKRI
Sbjct: 1   MESSSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRNYRMESKRI 60

Query: 61  IEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEW 115
           IEWTRMESSNGMEWNNP T+MQSSS+ IEWNHRMDSNGIIIERNRME S +GNEW
Sbjct: 61  IEWTRMESSNGMEWNNPRTRMQSSSYRIEWNHRMDSNGIIIERNRMESSLDGNEW 115



 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 68  SSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQMEMKGVI 126
           SSN +     W++M+SS++  EWNHR++SNGI IE  RME +SNG + N ++ME K +I
Sbjct: 4   SSNELNAIIEWSRMESSANGKEWNHRIESNGINIEWTRMESTSNGIKRN-YRMESKRII 61


>gi|239758019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score =  160 bits (406), Expect = 2e-40
 Identities = 76/86 (88%), Positives = 80/86 (93%)

Query: 42  MESTSNGKKRNYRMESKRIIEWTRMESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIII 101
           MESTSNG KRNYRMESKRIIEWTRMESSNGMEWNN  T+ QSSS+ IEWNHRMDSNGIII
Sbjct: 1   MESTSNGIKRNYRMESKRIIEWTRMESSNGMEWNNTRTRKQSSSYRIEWNHRMDSNGIII 60

Query: 102 ERNRMEPSSNGNEWNHHQMEMKGVII 127
           ERNRME SS+GNEWNHH+MEMKGVII
Sbjct: 61  ERNRMESSSDGNEWNHHRMEMKGVII 86



 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 26/86 (30%)

Query: 1  MESSSN--------ELNAVIEWSRMESSSNGMEWN----------------HRIESNGII 36
          MES+SN        E   +IEW+RMESS NGMEWN                HR++SNGII
Sbjct: 1  MESTSNGIKRNYRMESKRIIEWTRMESS-NGMEWNNTRTRKQSSSYRIEWNHRMDSNGII 59

Query: 37 IEWNRMESTSNGKKRN-YRMESKRII 61
          IE NRMES+S+G + N +RME K +I
Sbjct: 60 IERNRMESSSDGNEWNHHRMEMKGVI 85


>gi|239755284 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 62

 Score =  120 bits (301), Expect = 3e-28
 Identities = 55/62 (88%), Positives = 58/62 (93%)

Query: 66  MESSNGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQMEMKGV 125
           MESSNGMEWNNP T+MQSS + IEWNHRMDSNGIIIERNRME SSNGNEWNHH+MEMKGV
Sbjct: 1   MESSNGMEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRMEMKGV 60

Query: 126 II 127
           II
Sbjct: 61  II 62



 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 10/66 (15%)

Query: 1  MESSSNELNAVIEWS----RMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRN-YRM 55
          MESS+      +EW+    RM+SS N +EWNHR++SNGIIIE NRMES+SNG + N +RM
Sbjct: 1  MESSNG-----MEWNNPCTRMQSSLNRIEWNHRMDSNGIIIERNRMESSSNGNEWNHHRM 55

Query: 56 ESKRII 61
          E K +I
Sbjct: 56 EMKGVI 61


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 16/76 (21%)

Query: 29  RIESNGIIIEWNRMESTSNGKKR-NYRMESKRIIEWTRMESSNGMEWNNPWTQMQSSSHS 87
           ++E NGIIIEWNRME +SNG  R ++RME   +I          +EWN    +  SS + 
Sbjct: 404 KMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVI----------IEWN----RKASSCNG 449

Query: 88  IEWNH-RMDSNGIIIE 102
           IEW+H RMDS GIIIE
Sbjct: 450 IEWHHQRMDSKGIIIE 465



 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 4/60 (6%)

Query: 72  MEWNN---PWTQMQSSSHSIEWNH-RMDSNGIIIERNRMEPSSNGNEWNHHQMEMKGVII 127
           MEWN     W +M+ SS+ I  +H RM+ NG+IIE NR   S NG EW+H +M+ KG+II
Sbjct: 405 MEWNGIIIEWNRMELSSNGINRDHHRMEPNGVIIEWNRKASSCNGIEWHHQRMDSKGIII 464



 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 2/53 (3%)

Query: 11  VIEWSRMESSSNGMEWNH-RIESNGIIIEWNRMESTSNG-KKRNYRMESKRII 61
           +IEW+RME SSNG+  +H R+E NG+IIEWNR  S+ NG +  + RM+SK II
Sbjct: 411 IIEWNRMELSSNGINRDHHRMEPNGVIIEWNRKASSCNGIEWHHQRMDSKGII 463



 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 4/55 (7%)

Query: 77  PWTQMQSSSHSIEWNH----RMDSNGIIIERNRMEPSSNGNEWNHHQMEMKGVII 127
           P  Q  ++ H +   H    +M+ NGIIIE NRME SSNG   +HH+ME  GVII
Sbjct: 384 PLWQKAANLHKMSLPHQLALKMEWNGIIIEWNRMELSSNGINRDHHRMEPNGVII 438


>gi|239755286 PREDICTED: similar to hCG1742442 [Homo sapiens]
          Length = 296

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 30/44 (68%), Positives = 34/44 (77%), Gaps = 3/44 (6%)

Query: 84  SSHSIEWN-HRMDSNGIIIERNRMEPSSNGNEWNHHQMEMKGVI 126
           S+  IEWN HRM+SN III+ NRME  SNG EWNHHQME  G+I
Sbjct: 3   SNAIIEWNRHRMESNAIIIKWNRME--SNGVEWNHHQMESSGII 44



 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 14/67 (20%)

Query: 7  ELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRN-YRMESKRIIEWTR 65
          E NA+IEW+R           HR+ESN III+WNRME  SNG + N ++MES  IIEW R
Sbjct: 2  ESNAIIEWNR-----------HRMESNAIIIKWNRME--SNGVEWNHHQMESSGIIEWIR 48

Query: 66 MESSNGM 72
          +     M
Sbjct: 49 VSVQTAM 55



 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 32/62 (51%), Positives = 38/62 (61%), Gaps = 17/62 (27%)

Query: 30 IESNGIIIEWNRMESTSNGKKRNYRMESKRII-EWTRMESSNGMEWNNPWTQMQSSSHSI 88
          +ESN II EWNR           +RMES  II +W RMES NG+EWN+   QM+SS   I
Sbjct: 1  MESNAII-EWNR-----------HRMESNAIIIKWNRMES-NGVEWNH--HQMESSG-II 44

Query: 89 EW 90
          EW
Sbjct: 45 EW 46


>gi|109689695 transient receptor potential cation channel, subfamily
           M, member 8 [Homo sapiens]
          Length = 1104

 Score = 30.0 bits (66), Expect = 0.50
 Identities = 20/75 (26%), Positives = 34/75 (45%)

Query: 2   ESSSNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRII 61
           ES    L  ++E S + +     E    I SN I     +  STS   K N+  + K ++
Sbjct: 375 ESWIKWLKEILECSHLLTVIKMEEAGDEIVSNAISYALYKAFSTSEQDKDNWNGQLKLLL 434

Query: 62  EWTRMESSNGMEWNN 76
           EW +++ +N   + N
Sbjct: 435 EWNQLDLANDEIFTN 449


>gi|11141889 WW45 protein [Homo sapiens]
          Length = 383

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 17  MESSSNGMEWNHRIESNGIIIEWNRMESTSNG--------KKRNYR 54
           ++ ++N   W+H +E  G+   W R+ES+  G        KK  YR
Sbjct: 218 IDHNTNTTHWSHPLEREGLPPGWERVESSEFGTYYVDHTNKKAQYR 263


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 18   ESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRIIEWTRMESSNGMEWNNP 77
            ESSS+  ++N  +   G     N   S+S G+     +E K +++W    S+ G  WN  
Sbjct: 1165 ESSSDSTQFNQPVGGGGFR-RANSEASSSEGQSSLSSLE-KLMMDWNEASSAPGYNWNQS 1222

Query: 78   WTQMQSSS 85
                QSSS
Sbjct: 1223 -VLFQSSS 1229


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 35    IIIEWNRMESTSNGKKRNYRME--SKRIIEWTRM 66
             III+W + ES    +  NY ++   K+ + WTR+
Sbjct: 29256 IIIQWTKPESDGGNEISNYLVDKREKKSLRWTRV 29289


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 35    IIIEWNRMESTSNGKKRNYRME--SKRIIEWTRM 66
             III+W + ES    +  NY ++   K+ + WTR+
Sbjct: 22951 IIIQWTKPESDGGNEISNYLVDKREKKSLRWTRV 22984


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 35    IIIEWNRMESTSNGKKRNYRME--SKRIIEWTRM 66
             III+W + ES    +  NY ++   K+ + WTR+
Sbjct: 22884 IIIQWTKPESDGGNEISNYLVDKREKKSLRWTRV 22917


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 35    IIIEWNRMESTSNGKKRNYRME--SKRIIEWTRM 66
             III+W + ES    +  NY ++   K+ + WTR+
Sbjct: 22759 IIIQWTKPESDGGNEISNYLVDKREKKSLRWTRV 22792


>gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo
           sapiens]
          Length = 948

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 44  STSNGKKRNYRMESKRIIEWTRMESSNGMEWNNPWTQMQSSSHSIEW 90
           S+   KK  +R E    +   + E     +WN+PW   +S S  I W
Sbjct: 258 SSLEAKKAQWRKELDEQVALKKKEKEVSEKWNDPW--KKSESDKIIW 302


>gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo
           sapiens]
          Length = 914

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 44  STSNGKKRNYRMESKRIIEWTRMESSNGMEWNNPWTQMQSSSHSIEW 90
           S+   KK  +R E    +   + E     +WN+PW   +S S  I W
Sbjct: 224 SSLEAKKAQWRKELDEQVALKKKEKEVSEKWNDPW--KKSESDKIIW 268


>gi|54633319 PDZ domain-containing guanine nucleotide exchange factor
            I [Homo sapiens]
          Length = 1601

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 39   WNRMESTSNGKKRNYRMESKRIIEWTRMESSNGME 73
            W    S S+  + NY    +R++E T  ESS G++
Sbjct: 1433 WTSSSSLSDTYEPNYGTVKRRVLESTPAESSEGLD 1467


>gi|16306568 poly(A) polymerase gamma [Homo sapiens]
          Length = 736

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 23/114 (20%), Positives = 59/114 (51%), Gaps = 8/114 (7%)

Query: 5   SNELNAVIEWSRMESSS-NGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRI-IE 62
           +N +N + E  ++E++     + +H + +   I++  + +S S+  + +  ++SKR+ ++
Sbjct: 470 ANNINMLKEGMKIEATHVKKKQLHHYLPAE--ILQKKKKQSLSDVNRSSGGLQSKRLSLD 527

Query: 63  WTRMESS----NGMEWNNPWTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNG 112
            + ++SS    NG  +N+P ++  S S      +  +   +I+E+    P + G
Sbjct: 528 SSCLDSSRDTDNGTPFNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQG 581


>gi|9624969 butyrophilin-like 2 [Homo sapiens]
          Length = 455

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 61  IEWTRMESS-------NGMEWNNPWTQMQSSSHSIEWNHRMDSNG-IIIERNRMEPSSNG 112
           + W R E S       +G+E      QM+     +EW     + G + ++ + ++PS NG
Sbjct: 63  VRWYRSEPSTPVFVHRDGVEVTE--MQMEEYRGWVEWIENGIAKGNVALKIHNIQPSDNG 120

Query: 113 NEWNHHQ 119
             W H Q
Sbjct: 121 QYWCHFQ 127


>gi|110347414 fibroblast growth factor receptor substrate 2 [Homo
           sapiens]
          Length = 508

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 83  SSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQMEMKG 124
           +S+H IE++ R D    +   +   PS    + N+ Q++++G
Sbjct: 402 ASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEG 443


>gi|110347408 fibroblast growth factor receptor substrate 2 [Homo
           sapiens]
          Length = 508

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 83  SSSHSIEWNHRMDSNGIIIERNRMEPSSNGNEWNHHQMEMKG 124
           +S+H IE++ R D    +   +   PS    + N+ Q++++G
Sbjct: 402 ASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEG 443


>gi|219842266 usherin isoform B [Homo sapiens]
          Length = 5202

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 17   MESSSNGMEWNHRIESNGIIIEWNRMESTSNGKK-RNYRMESKRIIEWTRMESS-NGMEW 74
            ++S+S  + W+  +  NG II +  +     GK   N  +++   I +T   +  N   +
Sbjct: 4166 VKSTSVELSWSEPVNPNGKIIRYEVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225

Query: 75   NN----PWTQMQSSSHSIEWN 91
            N+    PWTQ +   ++  WN
Sbjct: 4226 NDTGLQPWTQCEYKIYT--WN 4244


>gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
          Length = 141

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 1  MESSSNELNAV--IEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRN 52
          +++S+ E  A   ++W+  E+ S G EWN R   NG + +   + + S G  R+
Sbjct: 29 LDTSTTEATARRRLKWAAGETRS-GREWNSRQLINGTVQQEGGLAAFSQGSPRS 81


>gi|102469034 janus kinase 1 [Homo sapiens]
          Length = 1154

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 5   SNELNAVIEWSRMESSSNGMEWNHRIESNGIIIEWNRMESTSNGKKRNYRMESKRIIEWT 64
           SN+   V+ +  M + + G++W H+     +  E N+++      K     E  +I E  
Sbjct: 304 SNDGGNVLYYEVMVTGNLGIQWRHKPNVVSVEKEKNKLKRKKLENKHKKDEEKNKIRE-- 361

Query: 65  RMESSNGMEWNN 76
                   EWNN
Sbjct: 362 --------EWNN 365


>gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens]
          Length = 993

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 78  WTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNE--WNHHQMEMKGVII 127
           W + + +  ++      DS G+++  N  EP   G +  W  H  E K +++
Sbjct: 582 WNETEPACRAVCSGEITDSAGVVLSPNWPEPYGRGQDCIWGVHVEEDKRIML 633


>gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens]
          Length = 994

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 78  WTQMQSSSHSIEWNHRMDSNGIIIERNRMEPSSNGNE--WNHHQMEMKGVII 127
           W + + +  ++      DS G+++  N  EP   G +  W  H  E K +++
Sbjct: 582 WNETEPACRAVCSGEITDSAGVVLSPNWPEPYGRGQDCIWGVHVEEDKRIML 633


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.122    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,722,394
Number of Sequences: 37866
Number of extensions: 169658
Number of successful extensions: 493
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 52
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.