Guide to the Human Genome
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Name: LOC100133591 Sequence: fasta or formatted (353aa) NCBI GI: 239757989
Description:

PREDICTED: similar to MAP kinase 3c

Not currently referenced in the text

Other entries for this name:
alt prot {198aa} PREDICTED: similar to mitogen-activated protein kinase kinase 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         28           2
 C cysteine            2.0          7           1
 D aspartate           5.9         21           2
 E glutamate           5.4         19           1
 F phenylalanine       2.0          7           1
 G glycine             7.1         25           1
 H histidine           2.3          8           1
 I isoleucine          5.4         19           1
 K lysine              5.9         21           2
 L leucine            10.2         36           3
 M methionine          4.0         14           2
 N asparagine          3.1         11           1
 P proline             5.7         20           2
 Q glutamine           3.4         12           3
 R arginine            5.7         20           2
 S serine              6.2         22           2
 T threonine           5.1         18           2
 V valine              8.2         29           2
 W tryptophan          2.0          7           1
 X unknown             0.3          1           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to MAP kinase 3c 
MAP2K3                0.651   mitogen-activated protein kinase kinase 3 isoform B ...
MAP2K3                0.613   mitogen-activated protein kinase kinase 3 isoform A ...
MAP2K6                0.508   mitogen-activated protein kinase kinase 6 
LOC100133591          0.410   PREDICTED: similar to mitogen-activated protein kin...
MAP2K4                0.344   mitogen-activated protein kinase kinase 4 
MAP2K7                0.243   mitogen-activated protein kinase kinase 7 
MAP2K2                0.202   mitogen-activated protein kinase kinase 2 
MAP2K1                0.198   mitogen-activated protein kinase kinase 1 
MAP2K5                0.182   mitogen-activated protein kinase kinase 5 isoform A ...
MAP2K5                0.182   mitogen-activated protein kinase kinase 5 isoform B [...
STK3                  0.146   serine/threonine kinase 3 
STK4                  0.140   serine/threonine kinase 4 
STK24                 0.115   serine/threonine kinase 24 isoform a 
STK10                 0.115   serine/threonine kinase 10 
STK24                 0.111   serine/threonine kinase 24 isoform b 
RPS6KA1               0.108   ribosomal protein S6 kinase, 90kDa, polypeptide 1 is...
MINK1                 0.106   misshapen/NIK-related kinase isoform 4 
MINK1                 0.106   misshapen/NIK-related kinase isoform 2 
MINK1                 0.106   misshapen/NIK-related kinase isoform 3 
MINK1                 0.106   misshapen/NIK-related kinase isoform 1 
STK25                 0.105   serine/threonine kinase 25 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 7 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 3 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.105   TRAF2 and NCK interacting kinase isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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