Guide to the Human Genome
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Name: LOC100133591 Sequence: fasta or formatted (198aa) NCBI GI: 239751247
Description:

PREDICTED: similar to mitogen-activated protein kinase kinase 3

Not currently referenced in the text

Other entries for this name:
alt prot {353aa} PREDICTED: similar to MAP kinase 3c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         11           1
 C cysteine            3.0          6           2
 D aspartate           7.1         14           1
 E glutamate           5.1         10           1
 F phenylalanine       2.5          5           1
 G glycine             9.1         18           2
 H histidine           2.0          4           1
 I isoleucine          6.1         12           1
 K lysine              7.1         14           1
 L leucine             8.1         16           1
 M methionine          4.5          9           1
 N asparagine          4.0          8           1
 P proline             4.5          9           1
 Q glutamine           1.5          3           1
 R arginine            6.1         12           1
 S serine              4.5          9           1
 T threonine           4.0          8           1
 V valine              9.6         19           1
 W tryptophan          2.5          5           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mitogen-activated protein kin... 
MAP2K3                0.733   mitogen-activated protein kinase kinase 3 isoform A ...
MAP2K3                0.733   mitogen-activated protein kinase kinase 3 isoform B ...
LOC100133591          0.725   PREDICTED: similar to MAP kinase 3c 
MAP2K6                0.656   mitogen-activated protein kinase kinase 6 
MAP2K4                0.483   mitogen-activated protein kinase kinase 4 
MAP2K7                0.326   mitogen-activated protein kinase kinase 7 
MAP2K2                0.275   mitogen-activated protein kinase kinase 2 
MAP2K1                0.272   mitogen-activated protein kinase kinase 1 
MAP2K5                0.262   mitogen-activated protein kinase kinase 5 isoform B [...
MAP2K5                0.260   mitogen-activated protein kinase kinase 5 isoform A ...
STK3                  0.201   serine/threonine kinase 3 
STK4                  0.198   serine/threonine kinase 4 
STK24                 0.157   serine/threonine kinase 24 isoform b 
STK24                 0.157   serine/threonine kinase 24 isoform a 
STK25                 0.154   serine/threonine kinase 25 
NEK7                  0.154   NIMA-related kinase 7 
MST4                  0.152   serine/threonine protein kinase MST4 isoform 1 [Homo...
MAP4K2                0.149   mitogen-activated protein kinase kinase kinase kinas...
STK10                 0.149   serine/threonine kinase 10 
STK32C                0.149   serine/threonine kinase 32C 
RPS6KA3               0.141   ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Ho...
NEK6                  0.141   NIMA-related kinase 6 isoform 1 
NEK6                  0.141   NIMA-related kinase 6 isoform 2 
MYO3B                 0.141   myosin IIIB isoform 1 
MYO3B                 0.141   myosin IIIB isoform 2 
STK32B                0.139   serine/threonine kinase 32B 
STK32A                0.139   serine/threonine kinase 32A isoform 1 
RPS6KA1               0.139   ribosomal protein S6 kinase, 90kDa, polypeptide 1 is...
RPS6KA1               0.139   ribosomal protein S6 kinase, 90kDa, polypeptide 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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