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Search of human proteins with 239757718
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757718 PREDICTED: hypothetical protein XP_002345530 [Homo
sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757718 PREDICTED: hypothetical protein XP_002345530 [Homo ... 504 e-143
gi|239752205 PREDICTED: hypothetical protein XP_002348148 [Homo ... 504 e-143
gi|239746728 PREDICTED: hypothetical protein XP_002343821 [Homo ... 504 e-143
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|190886454 tumor specificity and mitosis phase-dependent expre... 39 0.005
gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] 37 0.020
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 37 0.020
gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens] 37 0.020
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 36 0.034
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 33 0.17
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 33 0.22
gi|24497501 forkhead box A1 [Homo sapiens] 33 0.29
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 33 0.29
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 33 0.29
gi|239740641 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.29
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 32 0.38
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 32 0.38
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 32 0.38
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 32 0.38
gi|124378039 SEC16 homolog A [Homo sapiens] 32 0.50
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 32 0.50
gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo ... 32 0.50
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 32 0.50
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 32 0.50
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 32 0.50
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 32 0.50
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 32 0.50
>gi|239757718 PREDICTED: hypothetical protein XP_002345530 [Homo
sapiens]
Length = 242
Score = 504 bits (1298), Expect = e-143
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG 60
MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG
Sbjct: 1 MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG 60
Query: 61 PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT 120
PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT
Sbjct: 61 PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT 120
Query: 121 GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS 180
GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS
Sbjct: 121 GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS 180
Query: 181 HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG 240
HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG
Sbjct: 181 HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG 240
Query: 241 GH 242
GH
Sbjct: 241 GH 242
>gi|239752205 PREDICTED: hypothetical protein XP_002348148 [Homo
sapiens]
Length = 242
Score = 504 bits (1298), Expect = e-143
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG 60
MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG
Sbjct: 1 MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG 60
Query: 61 PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT 120
PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT
Sbjct: 61 PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT 120
Query: 121 GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS 180
GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS
Sbjct: 121 GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS 180
Query: 181 HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG 240
HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG
Sbjct: 181 HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG 240
Query: 241 GH 242
GH
Sbjct: 241 GH 242
>gi|239746728 PREDICTED: hypothetical protein XP_002343821 [Homo
sapiens]
Length = 242
Score = 504 bits (1298), Expect = e-143
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG 60
MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG
Sbjct: 1 MAVKMEVGDQCVSEITCVSTTGKKPKVWAHLPLLQLLLLLHLQLLRLKDNGKNQDHKGSG 60
Query: 61 PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT 120
PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT
Sbjct: 61 PNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRT 120
Query: 121 GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS 180
GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS
Sbjct: 121 GPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGS 180
Query: 181 HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG 240
HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG
Sbjct: 181 HDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFG 240
Query: 241 GH 242
GH
Sbjct: 241 GH 242
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 25/145 (17%)
Query: 116 LRPRTGPSPETSPSGPIVSPTGSHLAYLLIVVLLQLLLRLLRVAFREQFVRGLG------ 169
L+PR G P + SG ++P A LL+ L+ R ++ E GLG
Sbjct: 48 LQPRAGRGPCATLSGRCITPA---TALLLLSHRLRAQCRPMQATAAEAGSPGLGRLGKEP 104
Query: 170 -------------FPCTGSSDGGSHDCRGH-RKRKGGERSRTADRAAFPGAEARAGRERR 215
PC +S GS CR + R GG R +AA A++ G ++
Sbjct: 105 PSRESWTGSAPRRCPCQDASRAGSGVCRSRPQSRGGGSRKPRRQKAAAAQAKSLGGGGKK 164
Query: 216 PLAPGPPVPAAGPAALALSGRRGFG 240
P AAG A A RRG G
Sbjct: 165 PRR--QKCAAAGQKAAAEESRRGGG 187
>gi|190886454 tumor specificity and mitosis phase-dependent
expression protein [Homo sapiens]
Length = 394
Score = 38.5 bits (88), Expect = 0.005
Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 162 EQFVRGLGFPCTGSSDGGSHDCRGHRKRKGGERSRTADRAAF-PGAEARAGRERRPLAPG 220
E+FV GL S+DGG D R G + R F P E R ER+PL G
Sbjct: 85 ERFVAGLRTSLL-SADGGPRDPTRAPARPGDQPPPPPQRLVFAPADEPRTVLERKPLPLG 143
Query: 221 PPVPAAGPAALALS 234
P AGP+A A S
Sbjct: 144 VRAPLAGPSAAARS 157
>gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]
Length = 1740
Score = 36.6 bits (83), Expect = 0.020
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 99 FLTCTFSEPQRGKDQKW---LRPRTGPSPETSPSGPIVSPTGSHLAYLLIVVLLQLL 152
+ C + EP+RG ++K L P TGP P +P+GP V GS LL VLLQ L
Sbjct: 643 YCVCDYMEPERGSEKKTSGPLSPPTGP-PGPAPAGPAVR-LGSVPYSLLFRVLLQCL 697
>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
Length = 1807
Score = 36.6 bits (83), Expect = 0.020
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 99 FLTCTFSEPQRGKDQKW---LRPRTGPSPETSPSGPIVSPTGSHLAYLLIVVLLQLL 152
+ C + EP+RG ++K L P TGP P +P+GP V GS LL VLLQ L
Sbjct: 643 YCVCDYMEPERGSEKKTSGPLSPPTGP-PGPAPAGPAVR-LGSVPYSLLFRVLLQCL 697
>gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]
Length = 1784
Score = 36.6 bits (83), Expect = 0.020
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 99 FLTCTFSEPQRGKDQKW---LRPRTGPSPETSPSGPIVSPTGSHLAYLLIVVLLQLL 152
+ C + EP+RG ++K L P TGP P +P+GP V GS LL VLLQ L
Sbjct: 643 YCVCDYMEPERGSEKKTSGPLSPPTGP-PGPAPAGPAVR-LGSVPYSLLFRVLLQCL 697
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 35.8 bits (81), Expect = 0.034
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 172 CTGSSDGGSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPP--------- 222
C G + G + R GG++ R + P A+ G P PGP
Sbjct: 459 CPGEAQGVTDGRRASPSAPGGDQDRVSTT---PQPTAQPGSGAGPQRPGPTQKRGGRGVR 515
Query: 223 VPAAGPAALALSGRRG 238
VP PA +A SGRRG
Sbjct: 516 VPEGSPARIAFSGRRG 531
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.17
Identities = 36/118 (30%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 140 LAYLLIVVLLQLLLRLLRVAFREQFVRGLGFPCTGSSDGGSH--DCRGHRKRKGGERSRT 197
L LL+ V ++ ++ R Q RG G+ DG H RG + R +T
Sbjct: 228 LVLLLLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQT 287
Query: 198 ADRAAFPGAEARAGRER---RPLAPG------------PPVPAAGPAALALSGRRGFG 240
AA P A R R RP P PP PA G A L GRR G
Sbjct: 288 TPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRPPPPPAPGAPARPLRGRRSHG 345
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 33.1 bits (74), Expect = 0.22
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 166 RGLGFPCTGSSDGGSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPA 225
RGL P D G H RG R +K G R T PG G + PGP P
Sbjct: 1118 RGLPGPQGPRGDKGDHGDRGDRGQK-GHRGFTG-LQGLPGPPGPNGEQGSAGIPGPFGPR 1175
Query: 226 AGPAALALSGRRGFGG 241
P + SG+ G G
Sbjct: 1176 GPPGPVGPSGKEGNPG 1191
Score = 30.0 bits (66), Expect = 1.9
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 179 GSHDCRGHRKRKGGERSRTADRAA-FPGAEARAGRERRPLAPGPPVPAAGPAALALSGRR 237
G H G KGG ++ A FPG+ R G APGP P P G R
Sbjct: 885 GPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLR 944
Query: 238 GFGG 241
G G
Sbjct: 945 GDPG 948
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 32.7 bits (73), Expect = 0.29
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 174 GSSDGGSHDCRGHRKRK--GGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAAL 231
GS GGS G RK G + +AD G + G+ APG PAA P L
Sbjct: 279 GSGSGGSGAKGGPESRKDPSGASNPSADSPLHRGVHGKTGQLEGAPAPG---PAASPQTL 335
Query: 232 ALSGRRGFGG 241
SG GG
Sbjct: 336 DHSGATATGG 345
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 32.7 bits (73), Expect = 0.29
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 179 GSHDCRGH-RKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRR 237
GS CR + R GG + +AA GA++R G ++P G AG + G R
Sbjct: 134 GSRVCRSRPQTRGGGGKQPRRQKAAVAGAKSRGGEGKKPQRRGQKAATAGAKSRG-GGVR 192
Query: 238 GFGG 241
GG
Sbjct: 193 SLGG 196
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 32.7 bits (73), Expect = 0.29
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 173 TGSSDGGSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAAL- 231
TG +GG G R R+R R P R+G RP AP PP+P PAA+
Sbjct: 356 TGRGEGGGG---GSRADVTAGRARPRRRRWEPLRAQRSGA--RPGAPAPPLPCLPPAAVC 410
Query: 232 -ALSGRRGFGG 241
AL+G GG
Sbjct: 411 HALAGAGAPGG 421
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 32.7 bits (73), Expect = 0.29
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 184 RGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRR 237
R R GG RSR + + AR+ E P APG VPA P+ L+ R
Sbjct: 108 RPRRPEPGGARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPSLPPLAAPR 161
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 32.7 bits (73), Expect = 0.29
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 173 TGSSDGGSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAAL- 231
TG +GG G R R+R R P R+G RP AP PP+P PAA+
Sbjct: 356 TGRGEGGGG---GSRADVTAGRARPRRRRWEPLRAQRSGA--RPGAPAPPLPCLPPAAVC 410
Query: 232 -ALSGRRGFGG 241
AL+G GG
Sbjct: 411 HALAGAGAPGG 421
>gi|239740641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 32.7 bits (73), Expect = 0.29
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 85 TTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRP------RTGPSPETSPSGPIVSP 135
TTT + VP P+ L T S+ WLRP R P P P GP+ SP
Sbjct: 35 TTTAAHFWKVPSPAGLVSTSSQ--------WLRPARPSSRRGSPGPAPPPGGPLASP 83
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 32.7 bits (73), Expect = 0.29
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 203 FPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFGG 241
+ G + G++ PGPP PA P ++ L G RG G
Sbjct: 197 YKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRG 235
Score = 27.7 bits (60), Expect = 9.4
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 179 GSHDCRGHRKRKG--------GERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAA 230
GS +G R R G GE D A PG AG A GP P P
Sbjct: 343 GSKGEKGERGRAGELGEAGPSGEPGVPGD-AGMPGERGEAGHRGSAGALGPQGPPGAPGV 401
Query: 231 LALSGRRGFGG 241
G++G G
Sbjct: 402 RGFQGQKGSMG 412
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 32.3 bits (72), Expect = 0.38
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 187 RKRKGGERSRTADRAAF--PGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFGG 241
R K G++ + D PG +G+ RP PGP P AG + G RGF G
Sbjct: 198 RPGKRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGP--PPAGQLIMGPKGERGFPG 252
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 32.3 bits (72), Expect = 0.38
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 187 RKRKGGERSRTADRAAF--PGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFGG 241
R K G++ + D PG +G+ RP PGP P AG + G RGF G
Sbjct: 222 RPGKRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGP--PPAGQLIMGPKGERGFPG 276
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 32.3 bits (72), Expect = 0.38
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 187 RKRKGGERSRTADRAAF--PGAEARAGRERRPLAPGPPVPAAGPAALALSGRRGFGG 241
R K G++ + D PG +G+ RP PGP P AG + G RGF G
Sbjct: 232 RPGKRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGP--PPAGQLIMGPKGERGFPG 286
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 32.3 bits (72), Expect = 0.38
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 173 TGSSDGGSHDCRG-----HRKRKG-------GERSRTADRAAFPGAEARAGRERRPLAPG 220
+GS GG D RG HR G G R + PGA + R PL P
Sbjct: 60 SGSGGGGHRDGRGTGDANHRASSGRSSGSGAGGGGRGGKASGDPGASGMSPRAS-PLPPP 118
Query: 221 PPVPAAGPA 229
PP P A PA
Sbjct: 119 PPPPGAEPA 127
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 32.0 bits (71), Expect = 0.50
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 39 LLHLQLL-RLKDNGKNQDHKGSGPNPQGCPGKPAEENPQRRQEEQLCTTTIPCTYP---V 94
L+HLQ + R G H+ G PQ CPG P+ E Q + + P V
Sbjct: 1877 LVHLQQVERQIKEGAGVWHQ-DGALPQQCPGTPSSEMEQLDRPGLSQPGALGIANPLLAV 1935
Query: 95 PLPSFLTCTFSEPQRGKDQKWLRPRTGPSPETSPSGPIVSP 135
P PS P+ L P +P+T P GP+ SP
Sbjct: 1936 PAPS--------PEHSSPSVRLLP---SAPQTLPDGPLASP 1965
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 32.0 bits (71), Expect = 0.50
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 197 TADRAAFPGAEARAGRERRPLAPGPPVPAAGP 228
T D AA PG RE P+APGPP AA P
Sbjct: 606 TVDEAAAPGP-----RENSPVAPGPPGGAAAP 632
>gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo
sapiens]
Length = 96
Score = 32.0 bits (71), Expect = 0.50
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 180 SHDCRGHRKRKGGERSRT--ADRAAFPGAEARA---GRERRPLAP------GPPVPAAGP 228
S D + +K GG R R+ AFP A G PLAP GPP P G
Sbjct: 4 SIDAKKKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGG 63
Query: 229 AALALSGRRG 238
+A +GR G
Sbjct: 64 RGVANNGRAG 73
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.0 bits (71), Expect = 0.50
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 179 GSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGP--------PVPAAGPAA 230
GS G R ++GG + + + PG RAG P PGP P+ AGPA
Sbjct: 739 GSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPAL 797
Query: 231 LALSGRRG 238
+ G +G
Sbjct: 798 QTVPGPQG 805
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/54 (31%), Positives = 20/54 (37%)
Query: 185 GHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRG 238
G R G S A PG R G P PGPP P +G++G
Sbjct: 918 GEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKG 971
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 32.0 bits (71), Expect = 0.50
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 179 GSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGP--------PVPAAGPAA 230
GS G R ++GG + + + PG RAG P PGP P+ AGPA
Sbjct: 324 GSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPAL 382
Query: 231 LALSGRRG 238
+ G +G
Sbjct: 383 QTVPGPQG 390
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/54 (31%), Positives = 20/54 (37%)
Query: 185 GHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRG 238
G R G S A PG R G P PGPP P +G++G
Sbjct: 503 GEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKG 556
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 32.0 bits (71), Expect = 0.50
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 179 GSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGP--------PVPAAGPAA 230
GS G R ++GG + + + PG RAG P PGP P+ AGPA
Sbjct: 504 GSVRTPGGRVKEGGLKGQKGEPGV-PGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPAL 562
Query: 231 LALSGRRG 238
+ G +G
Sbjct: 563 QTVPGPQG 570
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/54 (31%), Positives = 20/54 (37%)
Query: 185 GHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVPAAGPAALALSGRRG 238
G R G S A PG R G P PGPP P +G++G
Sbjct: 683 GEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKG 736
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 32.0 bits (71), Expect = 0.50
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 172 CTGSSDGGSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVP 224
C G S G DC G + KG FPG E G P GPP P
Sbjct: 29 CYGCSPGSKCDCSGIKGEKG--------ERGFPGLEGHPGLPGFPGPEGPPGP 73
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 32.0 bits (71), Expect = 0.50
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 172 CTGSSDGGSHDCRGHRKRKGGERSRTADRAAFPGAEARAGRERRPLAPGPPVP 224
C G S G DC G + KG FPG E G P GPP P
Sbjct: 29 CYGCSPGSKCDCSGIKGEKG--------ERGFPGLEGHPGLPGFPGPEGPPGP 73
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,689,557
Number of Sequences: 37866
Number of extensions: 772074
Number of successful extensions: 6068
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 5147
Number of HSP's gapped (non-prelim): 1135
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.