Guide to the Human Genome
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Search of human proteins with 239757680

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757680 PREDICTED: hypothetical protein [Homo sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757680 PREDICTED: hypothetical protein [Homo sapiens]           268   1e-72
gi|239752170 PREDICTED: hypothetical protein [Homo sapiens]           268   1e-72
gi|239746693 PREDICTED: hypothetical protein [Homo sapiens]           268   1e-72
gi|4504187 glutathione S-transferase theta 2 [Homo sapiens]            33   0.045
gi|124249394 glutathione S-transferase theta 2B [Homo sapiens]         33   0.045
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]            30   0.65 
gi|226371708 exocyst complex component 3-like 2 [Homo sapiens]         29   1.1  
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]         28   1.9  
gi|7662320 leucine-rich repeats and immunoglobulin-like domains ...    28   1.9  
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [...    28   2.5  
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [...    28   2.5  
gi|14043022 methionyl-tRNA synthetase [Homo sapiens]                   27   3.2  
gi|145309320 forkhead box Q1 [Homo sapiens]                            27   4.2  
gi|167466164 glutathione S-transferase theta 1 [Homo sapiens]          27   4.2  
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]            27   4.2  
gi|116805342 human immunodeficiency virus type I enhancer bindin...    27   4.2  
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              27   4.2  
gi|5453754 NCK adaptor protein 1 [Homo sapiens]                        27   5.5  
gi|16306552 semaphorin Y [Homo sapiens]                                27   5.5  
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    26   7.2  
gi|194294523 intersectin 2 isoform 3 [Homo sapiens]                    26   7.2  
gi|194294521 intersectin 2 isoform 1 [Homo sapiens]                    26   7.2  
gi|194294525 intersectin 2 isoform 2 [Homo sapiens]                    26   7.2  
gi|124107614 PR domain containing 13 [Homo sapiens]                    26   7.2  
gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]    26   7.2  
gi|29725635 otopetrin 1 [Homo sapiens]                                 26   7.2  
gi|62865887 G protein-coupled receptor 54 [Homo sapiens]               26   9.4  
gi|239753530 PREDICTED: hypothetical protein [Homo sapiens]            26   9.4  
gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo ...    26   9.4  
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa...    26   9.4  

>gi|239757680 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  268 bits (684), Expect = 1e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
           MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI
Sbjct: 1   MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60

Query: 61  SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
           SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP
Sbjct: 61  SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120

Query: 121 YEGCPWY 127
           YEGCPWY
Sbjct: 121 YEGCPWY 127


>gi|239752170 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  268 bits (684), Expect = 1e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
           MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI
Sbjct: 1   MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60

Query: 61  SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
           SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP
Sbjct: 61  SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120

Query: 121 YEGCPWY 127
           YEGCPWY
Sbjct: 121 YEGCPWY 127


>gi|239746693 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  268 bits (684), Expect = 1e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
           MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI
Sbjct: 1   MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60

Query: 61  SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
           SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP
Sbjct: 61  SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120

Query: 121 YEGCPWY 127
           YEGCPWY
Sbjct: 121 YEGCPWY 127


>gi|4504187 glutathione S-transferase theta 2 [Homo sapiens]
          Length = 244

 Score = 33.5 bits (75), Expect = 0.045
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 29  QLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVKLSYPPALGGTLGMG 88
           ++ER    +  ALQ L+   L  RPFLA +Q++L DL+  E    +L  P ALG  L  G
Sbjct: 131 KVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALE----ELMQPVALGYELFEG 186


>gi|124249394 glutathione S-transferase theta 2B [Homo sapiens]
          Length = 244

 Score = 33.5 bits (75), Expect = 0.045
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 29  QLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVKLSYPPALGGTLGMG 88
           ++ER    +  ALQ L+   L  RPFLA +Q++L DL+  E    +L  P ALG  L  G
Sbjct: 131 KVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALE----ELMQPVALGYELFEG 186


>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 707

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 21/127 (16%)

Query: 1   MSTWRGSMSPSSCLPP-MSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAM-E 58
           M  WR + +     PP ++ C R                P  + L GG +    +L + +
Sbjct: 1   MGAWRATETSPPVRPPGLAACCR----------------PVQEVLVGGAVAGLLYLGLGD 44

Query: 59  QISLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVT 118
            + +      E +      PP   G L   L+P+ S   +P  CR   P  R    G + 
Sbjct: 45  ALEMPLSFSPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAAR---RGEIC 101

Query: 119 GPYEGCP 125
            P  G P
Sbjct: 102 APRGGSP 108


>gi|226371708 exocyst complex component 3-like 2 [Homo sapiens]
          Length = 409

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 5   RGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLED 64
           RG +  SS         R   DAAQL+RL  RL      LD  V    P LA E + LED
Sbjct: 241 RGRLRCSSARTRSRVAGRLREDAAQLQRLFRRLESQASWLDAVV----PHLA-EVMQLED 295

Query: 65  L--VLTEVMQVKLSYP 78
              +  EV  +   YP
Sbjct: 296 TPSIQVEVGVLVRDYP 311


>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
          Length = 1263

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 10  PSSCLPPMSTCARQPADAAQLERLLGRLTPAL------QHLDGGVLVARPFLAMEQISLE 63
           PS+  PPMS+   QP  AA   +  G  + +       ++      VA   L M+Q +  
Sbjct: 687 PSNSPPPMSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQS 746

Query: 64  DLVLTEVMQ---VKLSYPPALGGTLGMGLSPNPS 94
             V  +V +   +  + P    G+ G G+S +PS
Sbjct: 747 QQVTIQVQEPVDMLSNMPGTAAGSSGRGISISPS 780


>gi|7662320 leucine-rich repeats and immunoglobulin-like domains 2
           [Homo sapiens]
          Length = 1065

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 9   SPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLT 68
           +P SC  P+  C+R+   A     L G L P    LD     +   L+   ISLE   L 
Sbjct: 45  APCSCRIPLLDCSRRKLPAPSWRALSGLLPPDTAILD----FSHNRLSNWNISLESQTLQ 100

Query: 69  EVMQVKLSY 77
           E   VK++Y
Sbjct: 101 E---VKMNY 106


>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
          [Homo sapiens]
          Length = 871

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 4  WRGSMSPSSCLPPMSTCARQPADAAQLER 32
          WR    P  C+PP S  AR   D   L R
Sbjct: 43 WRWRSRPLHCVPPFSPLARSSRDHRNLRR 71


>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
          [Homo sapiens]
          Length = 835

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 4  WRGSMSPSSCLPPMSTCARQPADAAQLER 32
          WR    P  C+PP S  AR   D   L R
Sbjct: 43 WRWRSRPLHCVPPFSPLARSSRDHRNLRR 71


>gi|14043022 methionyl-tRNA synthetase [Homo sapiens]
          Length = 900

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 31  ERLLGRLTPALQHLDGGVLVAR-PFLAMEQISLEDLVLTEVMQVKLSYPPAL 81
           E +LG +  AL H+D  +     PFLA E  SL D+VL   +   L  P  L
Sbjct: 111 EDVLGSVRRALTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYL 162


>gi|145309320 forkhead box Q1 [Homo sapiens]
          Length = 403

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 64  DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFP-----AHCRWLRPL 108
           D +L +  + +     A G TL  G +P P  P FP     A CR L PL
Sbjct: 274 DSILRKPFRSRRLRDTAPGTTLQWGAAPCPPLPAFPALLPAAPCRALLPL 323


>gi|167466164 glutathione S-transferase theta 1 [Homo sapiens]
          Length = 240

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 23  QPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLV-LTEVM 71
           +P     L   L  L   LQ L+   L  + FL    ISL DLV +TE+M
Sbjct: 126 EPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELM 175


>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 175

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 78  PPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGPYEGCP 125
           PP  G   G    P P+    P  CR   P P    AG + GP+   P
Sbjct: 45  PPRPGEEPGNRHPPPPAARTHPGSCRARCPSP---AAGGLRGPWTAAP 89


>gi|116805342 human immunodeficiency virus type I enhancer binding
            protein 1 [Homo sapiens]
          Length = 2718

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 24   PADAAQLERL-----LGRL-TPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVKLSY 77
            PA  A+L  +     +G++  P LQ+L    L + P L+ME +++  L  T +      +
Sbjct: 2454 PAGVAELSSVVPCIPIGQIRVPGLQNLSTPGLQSLPSLSMETVNIVGLANTNM--APQVH 2511

Query: 78   PPALG-GTLGMG-LSPNPSCPVFPA 100
            PP L    +G+  L+ NPS    PA
Sbjct: 2512 PPGLALNAVGLQVLTANPSSQSSPA 2536


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 72  QVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
           Q +L  PP  GG+ G G +P   CP  PA+  W   +P L+  GS   P
Sbjct: 530 QPQLPRPPTTGGSEGAGAAP---CPPNPAN-SW---VPGLSPGGSRRPP 571


>gi|5453754 NCK adaptor protein 1 [Homo sapiens]
          Length = 377

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 14/43 (32%)

Query: 85  LGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGPYEGCPWY 127
           L  GL P+P        C ++RP        S+TG + G PWY
Sbjct: 255 LTSGLEPSPP------QCDYIRP--------SLTGKFAGNPWY 283


>gi|16306552 semaphorin Y [Homo sapiens]
          Length = 930

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 15  PPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVK 74
           PP   C  Q  +   LE LL  L        G    A P   +   +L       ++   
Sbjct: 752 PPPPGCPGQAVEVTTLEELLRYLHGPQPPRKG----AEPPAPLTSRALPPEPAPALLGGP 807

Query: 75  LSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGPYEG 123
              P      L + + P   C   PA      P PRL + G    P+ G
Sbjct: 808 SPRPHECASPLRLDVPPEGRCASAPARPALSAPAPRLGVGGGRRLPFSG 856


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 53   PFLAMEQISLEDLVLTEVMQVKLSYPPALGGT-----LGMGLSPNPSCPVFPAHCRWLRP 107
            PF A      E  +   +++  +S PP    T       M L P+P  PV PA    + P
Sbjct: 960  PFGAKGDSDPESPLAAPILETPISPPPEANCTDPEPVPPMILPPSPGSPVGPASPILMEP 1019

Query: 108  LP 109
            LP
Sbjct: 1020 LP 1021


>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
          Length = 1670

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 55  LAMEQISLE------DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPL 108
           +AM+ I L+       +VL  +M+    + P +    GMG  PN S P         +PL
Sbjct: 81  IAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIP---------QPL 131

Query: 109 PRLALAGSVTGPYEG 123
           P  A   S++    G
Sbjct: 132 PPAAPITSLSSATSG 146


>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
          Length = 1697

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 55  LAMEQISLE------DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPL 108
           +AM+ I L+       +VL  +M+    + P +    GMG  PN S P         +PL
Sbjct: 81  IAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIP---------QPL 131

Query: 109 PRLALAGSVTGPYEG 123
           P  A   S++    G
Sbjct: 132 PPAAPITSLSSATSG 146


>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
          Length = 1249

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 55  LAMEQISLE------DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPL 108
           +AM+ I L+       +VL  +M+    + P +    GMG  PN S P         +PL
Sbjct: 81  IAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIP---------QPL 131

Query: 109 PRLALAGSVTGPYEG 123
           P  A   S++    G
Sbjct: 132 PPAAPITSLSSATSG 146


>gi|124107614 PR domain containing 13 [Homo sapiens]
          Length = 707

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 86  GMGLSPNPSCPVF--PAHCRWLRPLP 109
           G+GLSP P  P F  P+    LRP P
Sbjct: 187 GLGLSPKPPAPDFAAPSQAGTLRPHP 212


>gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]
          Length = 219

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 17  MSTCARQPADAAQLERLL--GRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVK 74
           ++   RQ   A  LE LL  G LT  L+  DG  + +  F  +    LED     V+Q  
Sbjct: 51  LTAATRQELLAKALETLLLNGVLTLVLEE-DGTAVDSEDFFQL----LEDDTCLMVLQSG 105

Query: 75  LSYPPALGGTLGMGL 89
            S+ P   G L  GL
Sbjct: 106 QSWSPTRSGVLSYGL 120


>gi|29725635 otopetrin 1 [Homo sapiens]
          Length = 612

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 6  GSMSPSSCLPPMSTCARQPADAA 28
          GS  P++C PP S+  R P   A
Sbjct: 21 GSSGPAACSPPSSSAPRSPESPA 43


>gi|62865887 G protein-coupled receptor 54 [Homo sapiens]
          Length = 398

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 14  LPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQIS 61
           LP ++TCA   A    L R+  R  PA   L G VL  R      ++S
Sbjct: 215 LPLLATCACYAAMLRHLGRVAVRPAPADSALQGQVLAERAGAVRAKVS 262


>gi|239753530 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 340

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 2   STWRGSMSPSSCLPPMSTCARQP 24
           ST+RG M  +SCLP M +    P
Sbjct: 114 STYRGDMVTNSCLPLMGSYGPDP 136


>gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo
           sapiens]
          Length = 340

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 2   STWRGSMSPSSCLPPMSTCARQP 24
           ST+RG M  +SCLP M +    P
Sbjct: 114 STYRGDMVTNSCLPLMGSYGPDP 136


>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
           sapiens]
          Length = 817

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 2   STWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPA 40
           ST   S SPS+ LP   T  +     A+++++  +  PA
Sbjct: 553 STGPSSRSPSTLLPKKPTAIKTEGKPAEVKKMTAKSVPA 591


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,965,957
Number of Sequences: 37866
Number of extensions: 266763
Number of successful extensions: 786
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 39
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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