Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC729832 Sequence: fasta or formatted (127aa) NCBI GI: 239752170
Description:

PREDICTED: hypothetical protein

Referenced in:

Glutathione Pathways

Other entries for this name:
alt mRNA [127aa] PREDICTED: hypothetical protein
alt mRNA [127aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         11           2
 C cysteine            3.9          5           1
 D aspartate           2.4          3           1
 E glutamate           3.9          5           1
 F phenylalanine       1.6          2           1
 G glycine             8.7         11           2
 H histidine           1.6          2           1
 I isoleucine          0.8          1           1
 K lysine              0.8          1           1
 L leucine            15.7         20           2
 M methionine          4.7          6           1
 N asparagine          0.8          1           1
 P proline            12.6         16           2
 Q glutamine           3.9          5           1
 R arginine            6.3          8           1
 S serine              8.7         11           2
 T threonine           4.7          6           1
 V valine              5.5          7           1
 W tryptophan          2.4          3           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729832             1.000   PREDICTED: hypothetical protein 
LOC729832             1.000   PREDICTED: hypothetical protein 
GSTT2                 0.033   glutathione S-transferase theta 2 
GSTT2B                0.033   glutathione S-transferase theta 2B 
LOC100294438          0.021   PREDICTED: hypothetical protein 
EXOC3L2               0.016   exocyst complex component 3-like 2 
QSK                   0.012   serine/threonine-protein kinase QSK 
LRIG2                 0.012   leucine-rich repeats and immunoglobulin-like domains ...
CCHCR1                0.012   coiled-coil alpha-helical rod protein 1 isoform 1 [...
CCHCR1                0.012   coiled-coil alpha-helical rod protein 1 isoform 2 [...
MARS                  0.008   methionyl-tRNA synthetase 
FOXQ1                 0.008   forkhead box Q1 
GSTT1                 0.008   glutathione S-transferase theta 1 
LOC729370             0.008   PREDICTED: hypothetical protein 
HIVEP1                0.008   human immunodeficiency virus type I enhancer bindin...
KIAA1522              0.008   hypothetical protein LOC57648 
NCK1                  0.008   NCK adaptor protein 1 
SEMA6C                0.008   semaphorin Y 
MLL2                  0.004   myeloid/lymphoid or mixed-lineage leukemia 2 
ITSN2                 0.004   intersectin 2 isoform 3 
ITSN2                 0.004   intersectin 2 isoform 1 
ITSN2                 0.004   intersectin 2 isoform 2 
PRDM13                0.004   PR domain containing 13 
CIDEB                 0.004   cell death-inducing DFFA-like effector b 
OTOP1                 0.004   otopetrin 1 
KISS1R                0.004   G protein-coupled receptor 54 
LOC100294039          0.004   PREDICTED: hypothetical protein 
LOC100287476          0.004   PREDICTED: hypothetical protein XP_002342375 
MAP4                  0.004   microtubule-associated protein 4 isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press