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Search of human proteins with 239757548
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757548 PREDICTED: hypothetical protein [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757548 PREDICTED: hypothetical protein [Homo sapiens] 289 4e-79
gi|197927231 hypothetical protein LOC389152 [Homo sapiens] 38 0.002
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 36 0.010
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 36 0.010
gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens] 36 0.010
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 34 0.029
gi|24431933 reticulon 4 isoform B [Homo sapiens] 33 0.065
gi|47519490 reticulon 4 isoform D [Homo sapiens] 33 0.065
gi|24431935 reticulon 4 isoform A [Homo sapiens] 33 0.065
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 32 0.11
gi|33356148 formin-like 1 [Homo sapiens] 32 0.11
gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi... 32 0.15
gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] 32 0.15
gi|206597502 NESH protein isoform 2 [Homo sapiens] 32 0.15
gi|7705981 NESH protein isoform 1 [Homo sapiens] 32 0.15
gi|21040324 B-cell lymphoma 6 protein isoform 1 [Homo sapiens] 31 0.32
gi|197927147 B-cell lymphoma 6 protein isoform 2 [Homo sapiens] 31 0.32
gi|195927002 B-cell lymphoma 6 protein isoform 1 [Homo sapiens] 31 0.32
gi|124378039 SEC16 homolog A [Homo sapiens] 31 0.32
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.32
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.32
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.32
gi|40254422 nitric oxide synthase 3 isoform 1 [Homo sapiens] 30 0.42
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 30 0.55
gi|50345997 E1A binding protein p300 [Homo sapiens] 30 0.55
gi|117938768 GNAS complex locus alex [Homo sapiens] 30 0.55
gi|169173209 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho... 30 0.55
gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like [Ho... 30 0.55
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 30 0.55
>gi|239757548 PREDICTED: hypothetical protein [Homo sapiens]
Length = 132
Score = 289 bits (740), Expect = 4e-79
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MTNAPAVNKRACKGHPRGHPSQQVVMDGPQLCTVGQSCLGSAAGSQQTETLWWPWRPWWA 60
MTNAPAVNKRACKGHPRGHPSQQVVMDGPQLCTVGQSCLGSAAGSQQTETLWWPWRPWWA
Sbjct: 1 MTNAPAVNKRACKGHPRGHPSQQVVMDGPQLCTVGQSCLGSAAGSQQTETLWWPWRPWWA 60
Query: 61 ENKSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLD 120
ENKSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLD
Sbjct: 61 ENKSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLD 120
Query: 121 SEGEPANAQSWD 132
SEGEPANAQSWD
Sbjct: 121 SEGEPANAQSWD 132
>gi|197927231 hypothetical protein LOC389152 [Homo sapiens]
Length = 262
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 37 SCLGSAAGSQQT-ETLWWPWRPWWAENKSRRPLPSMPNPSICRESP-----TVFNLREEA 90
S GSAAG + +++ P+R E R P PNPS R SP F+L E
Sbjct: 170 SAAGSAAGLYPSARSMFSPYR----EGPIRGPCALAPNPSSERRSPRPIFDLEFHLLEPV 225
Query: 91 PTQSDLQRGSPAKLPAPPLR--LPALPPC 117
P+ S LQ P+ P P R LP PPC
Sbjct: 226 PS-SPLQPLPPSPSPGPHARPELPERPPC 253
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 35.8 bits (81), Expect = 0.010
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 60 AENKSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPAL--PPC 117
AE+ SRRPLP++P P E+P+ + AP + + P LP PP RLP P
Sbjct: 206 AESLSRRPLPALPVP----EAPSPSPVPSPAPGRKGSIQDRP--LPPPPPRLPGYGGPKV 259
Query: 118 TLDSEG 123
D EG
Sbjct: 260 EGDPEG 265
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 35.8 bits (81), Expect = 0.010
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 60 AENKSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPAL--PPC 117
AE+ SRRPLP++P P E+P+ + AP + + P LP PP RLP P
Sbjct: 299 AESLSRRPLPALPVP----EAPSPSPVPSPAPGRKGSIQDRP--LPPPPPRLPGYGGPKV 352
Query: 118 TLDSEG 123
D EG
Sbjct: 353 EGDPEG 358
>gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens]
Length = 317
Score = 35.8 bits (81), Expect = 0.010
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 99 GSPAKLPAPPLRLPALPPCTLDSEGEPANA 128
G PA+L P P PPC L +GEPA A
Sbjct: 249 GRPARLATAPAPAPGSPPCELSGKGEPAGA 278
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 34.3 bits (77), Expect = 0.029
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 68 LPSMPNPSICRESPTVFNLREEAPTQSDLQR---------GSPAKLPAPPLRLPALP 115
+PS P + R SP V ++ PT + G P LP PPL+ P+LP
Sbjct: 847 VPSQEMPLLARPSPPVQSVSPAVPTPPSMSAALPFPAGGLGMPPSLPPPPLQPPSLP 903
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 33.1 bits (74), Expect = 0.065
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 65 RRPLPSMPNPSICRE---SPTVFNLREEAPTQSDLQRGSPAKLPA---PPLRLPALPPCT 118
R PLP+ P + R+ P+ + AP+ SP+KLP PP R P PP +
Sbjct: 91 RGPLPAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPAS 150
Query: 119 LDSEGEP 125
+ + EP
Sbjct: 151 VSPQAEP 157
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 33.1 bits (74), Expect = 0.065
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 65 RRPLPSMPNPSICRE---SPTVFNLREEAPTQSDLQRGSPAKLPA---PPLRLPALPPCT 118
R PLP+ P + R+ P+ + AP+ SP+KLP PP R P PP +
Sbjct: 91 RGPLPAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPAS 150
Query: 119 LDSEGEP 125
+ + EP
Sbjct: 151 VSPQAEP 157
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 33.1 bits (74), Expect = 0.065
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 65 RRPLPSMPNPSICRE---SPTVFNLREEAPTQSDLQRGSPAKLPA---PPLRLPALPPCT 118
R PLP+ P + R+ P+ + AP+ SP+KLP PP R P PP +
Sbjct: 91 RGPLPAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPAS 150
Query: 119 LDSEGEP 125
+ + EP
Sbjct: 151 VSPQAEP 157
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 32.3 bits (72), Expect = 0.11
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 21 SQQVVMDGPQLCTVGQSCLGSAAGSQQTETLWWPWRPWWAENKSRRPLPSMPNPSICRES 80
+Q+V Q+ +G+ G Q + P P WA R LP R
Sbjct: 825 AQEVATMRTQVNRLGRRPQGPGPMGQASWMWTLPRGPRWAHGPGHRHLPYWRQKGPTRPK 884
Query: 81 PTVFNLREEAPTQSDLQ---RGSPAKL-PAPPLRLPALPP 116
P + + E+ DLQ RG+ + P PP PA PP
Sbjct: 885 PKILRGQGESCRAGDLQGLSRGTARRARPLPPDAPPAEPP 924
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 67 PLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPL--RLPALPP 116
PLP +P+P +E+P AP Q+ GSP PAPPL LP PP
Sbjct: 547 PLPGLPSP---QEAPP------SAPPQAPPLPGSPEPPPAPPLPGDLPPPPP 589
>gi|67089160 promyelocytic leukemia protein isoform 11 [Homo
sapiens]
Length = 781
Score = 32.0 bits (71), Expect = 0.15
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 5 PAVNKRACKGHPRGHPSQQVVMDGPQLCTVGQSCLGSAAG-SQQTETLWWPWRPWWAENK 63
P+ +K H G PS + + G ++ + + S AG +++ + AEN
Sbjct: 463 PSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS 522
Query: 64 SRRPLPSM-PNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPP 116
P+ + P S SP + +P QS L+ + LP PA PP
Sbjct: 523 CMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQGASSLPCGTYHPPAWPP 576
>gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens]
Length = 829
Score = 32.0 bits (71), Expect = 0.15
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 5 PAVNKRACKGHPRGHPSQQVVMDGPQLCTVGQSCLGSAAG-SQQTETLWWPWRPWWAENK 63
P+ +K H G PS + + G ++ + + S AG +++ + AEN
Sbjct: 511 PSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS 570
Query: 64 SRRPLPSM-PNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPP 116
P+ + P S SP + +P QS L+ + LP PA PP
Sbjct: 571 CMEPMETAEPQSSPAHSSPAHSSPAHSSPVQSLLRAQGASSLPCGTYHPPAWPP 624
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 32.0 bits (71), Expect = 0.15
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 4 APAVNKRACKGHPRGHPSQ---QVVMDGPQLCTVGQSCLGSAAGSQQTETLWWPWRPWWA 60
APA A G P P VV DG S L SA ++ P
Sbjct: 167 APATPASATLGRPPRIPEPVHLPVVPDGRLSAASSASSLASAGSAEGVGGAPTP------ 220
Query: 61 ENKSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLD 120
+ ++ P P +P+ P + + PT +L P + PL LP PP D
Sbjct: 221 KGQAAPPAPPLPSSLDPPPPPAAVEVFQRPPTLEELSPPPPDEELPLPLDLPPPPPLDGD 280
Query: 121 SEGEP 125
G P
Sbjct: 281 ELGLP 285
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 32.0 bits (71), Expect = 0.15
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 4 APAVNKRACKGHPRGHPSQ---QVVMDGPQLCTVGQSCLGSAAGSQQTETLWWPWRPWWA 60
APA A G P P VV DG S L SA ++ P
Sbjct: 173 APATPASATLGRPPRIPEPVHLPVVPDGRLSAASSASSLASAGSAEGVGGAPTP------ 226
Query: 61 ENKSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLD 120
+ ++ P P +P+ P + + PT +L P + PL LP PP D
Sbjct: 227 KGQAAPPAPPLPSSLDPPPPPAAVEVFQRPPTLEELSPPPPDEELPLPLDLPPPPPLDGD 286
Query: 121 SEGEP 125
G P
Sbjct: 287 ELGLP 291
>gi|21040324 B-cell lymphoma 6 protein isoform 1 [Homo sapiens]
Length = 706
Score = 30.8 bits (68), Expect = 0.32
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 67 PLPSMPNPSICRESPTVF--------NLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCT 118
P S +P C F N + E P Q++L R SP APP P + P
Sbjct: 363 PAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGPEQAELGRLSPRAYTAPPACQPPMEPEN 422
Query: 119 LD 120
LD
Sbjct: 423 LD 424
>gi|197927147 B-cell lymphoma 6 protein isoform 2 [Homo sapiens]
Length = 650
Score = 30.8 bits (68), Expect = 0.32
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 67 PLPSMPNPSICRESPTVF--------NLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCT 118
P S +P C F N + E P Q++L R SP APP P + P
Sbjct: 363 PAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGPEQAELGRLSPRAYTAPPACQPPMEPEN 422
Query: 119 LD 120
LD
Sbjct: 423 LD 424
>gi|195927002 B-cell lymphoma 6 protein isoform 1 [Homo sapiens]
Length = 706
Score = 30.8 bits (68), Expect = 0.32
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 67 PLPSMPNPSICRESPTVF--------NLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCT 118
P S +P C F N + E P Q++L R SP APP P + P
Sbjct: 363 PAKSPTDPKACNWKKYKFIVLNSLNQNAKPEGPEQAELGRLSPRAYTAPPACQPPMEPEN 422
Query: 119 LD 120
LD
Sbjct: 423 LD 424
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 30.8 bits (68), Expect = 0.32
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 67 PLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALP 115
PL ++P PS SP+V L T D SPA++P P+ LP P
Sbjct: 1931 PLLAVPAPSPEHSSPSVRLLPSAPQTLPDGPLASPARVPMFPVPLPPGP 1979
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.32
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 63 KSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLDSE 122
K P P+ P C + LRE A L R A+LP P R P P C +
Sbjct: 165 KGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGL-RAPAARLPEPTRRAPGRPGCLPTAA 223
Query: 123 GEPANA 128
A+A
Sbjct: 224 AAAADA 229
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.32
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 63 KSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLDSE 122
K P P+ P C + LRE A L R A+LP P R P P C +
Sbjct: 165 KGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGL-RAPAARLPEPTRRAPGRPGCLPTAA 223
Query: 123 GEPANA 128
A+A
Sbjct: 224 AAAADA 229
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.32
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 63 KSRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLDSE 122
K P P+ P C + LRE A L R A+LP P R P P C +
Sbjct: 165 KGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGL-RAPAARLPEPTRRAPGRPGCLPTAA 223
Query: 123 GEPANA 128
A+A
Sbjct: 224 AAAADA 229
>gi|40254422 nitric oxide synthase 3 isoform 1 [Homo sapiens]
Length = 1203
Score = 30.4 bits (67), Expect = 0.42
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 90 APTQ----SDLQRGSPAKLPAPPLRLPALPPCTL 119
APT+ L++GSP P +R P LPPCTL
Sbjct: 822 APTEPVAVEQLEKGSPGGPPPGWVRDPRLPPCTL 855
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 30.0 bits (66), Expect = 0.55
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 65 RRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSP-AKLPAPPLRLPALPPCTLDSEG 123
RRP P P P+ P AP R SP LPA PL PALP L
Sbjct: 759 RRPPPG-PAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRAS 817
Query: 124 EPANA 128
P +A
Sbjct: 818 RPLSA 822
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 30.0 bits (66), Expect = 0.55
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 64 SRRPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCT 118
SR P P PSI + P + PT + G ++ PP R PP T
Sbjct: 837 SRTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPTPPTT 891
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 30.0 bits (66), Expect = 0.55
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 66 RPLPSMPNPSICRESPTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLDSEGEP 125
+PLP P P+ R + PT P ++P PLRLP PP L G+P
Sbjct: 371 QPLPPQPIPTPGRPLTP-----QPIPTPGRPLTPQPIQMPGRPLRLP--PPLRLLRPGQP 423
Query: 126 ANAQ 129
+ Q
Sbjct: 424 MSPQ 427
>gi|169173209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 30.0 bits (66), Expect = 0.55
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 68 LPSMPNPSICRES-----PTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLDSE 122
LPS P + E P V +P ++ R KL PPL+L PP L +
Sbjct: 286 LPSSPGLLMVGEDMQPKDPAVLGSSRSSPPRAAGHRSRKRKLSGPPLQLQLTPPLQLRQD 345
Query: 123 G 123
G
Sbjct: 346 G 346
>gi|169172420 PREDICTED: UPF0607 protein ENSP00000382826-like [Homo
sapiens]
Length = 352
Score = 30.0 bits (66), Expect = 0.55
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 68 LPSMPNPSICRES-----PTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLDSE 122
LPS P + E P V +P ++ R KL PPL+L PP L +
Sbjct: 286 LPSSPGLLMVGEDMQPKDPAVLGSSRSSPPRAAGHRSRKRKLSGPPLQLQLTPPLQLRQD 345
Query: 123 G 123
G
Sbjct: 346 G 346
>gi|169172709 PREDICTED: UPF0607 protein ENSP00000382826-like [Homo
sapiens]
Length = 352
Score = 30.0 bits (66), Expect = 0.55
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 68 LPSMPNPSICRES-----PTVFNLREEAPTQSDLQRGSPAKLPAPPLRLPALPPCTLDSE 122
LPS P + E P V +P ++ R KL PPL+L PP L +
Sbjct: 286 LPSSPGLLMVGEDMQPKDPAVLGSSRSSPPRAAGHRSRKRKLSGPPLQLQLTPPLQLRQD 345
Query: 123 G 123
G
Sbjct: 346 G 346
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 30.0 bits (66), Expect = 0.55
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 67 PLPSMPNPSIC--------RESPTVFNLREEAPTQSDLQRGSPAKL-PAPPLR 110
P PS P P +C ES V LRE+ Q + R +P K PA P R
Sbjct: 2568 PRPSPPRPDVCMADPEGLSSESGRVERLREKEKVQGRVGRRAPGKAKPASPAR 2620
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,137,392
Number of Sequences: 37866
Number of extensions: 403413
Number of successful extensions: 1668
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 256
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.