Guide to the Human Genome
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Name: LOC100293874 Sequence: fasta or formatted (132aa) NCBI GI: 239757548
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         12           2
 C cysteine            3.8          5           1
 D aspartate           3.0          4           1
 E glutamate           5.3          7           2
 F phenylalanine       0.8          1           1
 G glycine             6.1          8           1
 H histidine           1.5          2           1
 I isoleucine          0.8          1           1
 K lysine              3.0          4           1
 L leucine             8.3         11           1
 M methionine          2.3          3           1
 N asparagine          4.5          6           1
 P proline            15.2         20           2
 Q glutamine           6.8          9           2
 R arginine            6.8          9           2
 S serine              9.1         12           1
 T threonine           5.3          7           1
 V valine              3.8          5           2
 W tryptophan          4.5          6           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FLJ46210              0.049   hypothetical protein LOC389152 
EFS                   0.042   embryonal Fyn-associated substrate isoform 2 
EFS                   0.042   embryonal Fyn-associated substrate isoform 1 
VGLL2                 0.042   vestigial-like 2 isoform 1 
PPRC1                 0.034   peroxisome proliferator-activated receptor gamma, co...
RTN4                  0.030   reticulon 4 isoform B 
RTN4                  0.030   reticulon 4 isoform D 
RTN4                  0.030   reticulon 4 isoform A 
KRBA1                 0.027   KRAB A domain containing 1 
FMNL1                 0.027   formin-like 1 
PML                   0.027   promyelocytic leukemia protein isoform 11 
PML                   0.027   promyelocytic leukemia protein isoform 9 
ABI3                  0.027   NESH protein isoform 2 
ABI3                  0.027   NESH protein isoform 1 
BCL6                  0.023   B-cell lymphoma 6 protein isoform 1 
BCL6                  0.023   B-cell lymphoma 6 protein isoform 2 
BCL6                  0.023   B-cell lymphoma 6 protein isoform 1 
SEC16A                0.023   SEC16 homolog A 
LOC100129571          0.023   PREDICTED: similar to hCG1646049 
LOC100129571          0.023   PREDICTED: similar to hCG1646049 
LOC100129571          0.023   PREDICTED: similar to hCG1646049 
NOS3                  0.019   nitric oxide synthase 3 isoform 1 
HCN2                  0.019   hyperpolarization activated cyclic nucleotide-gated...
EP300                 0.019   E1A binding protein p300 
GNAS                  0.019   GNAS complex locus alex 
LOC100132229          0.019   PREDICTED: hypothetical protein 
LOC100132229          0.019   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
LOC100132229          0.019   PREDICTED: UPF0607 protein ENSP00000382826-like [Ho...
MAP1A                 0.019   microtubule-associated protein 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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