Guide to the Human Genome
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Name: BCL6 Sequence: fasta or formatted (650aa) NCBI GI: 197927147
Description:

B-cell lymphoma 6 protein isoform 2

Referenced in:

B cells
BCL2 Pathways, Caspases, and Programmed Cell Death
Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [706aa] B-cell lymphoma 6 protein isoform 1
alt prot [706aa] B-cell lymphoma 6 protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         49           2
 C cysteine            4.2         27           1
 D aspartate           3.2         21           1
 E glutamate           7.4         48           3
 F phenylalanine       3.1         20           1
 G glycine             3.8         25           1
 H histidine           3.7         24           1
 I isoleucine          3.7         24           1
 K lysine              5.1         33           2
 L leucine             8.2         53           2
 M methionine          2.9         19           1
 N asparagine          4.8         31           2
 P proline             9.8         64           2
 Q glutamine           3.5         23           1
 R arginine            6.3         41           1
 S serine             10.6         69           3
 T threonine           4.6         30           1
 V valine              4.3         28           2
 W tryptophan          0.2          1           1
 Y tyrosine            3.1         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   B-cell lymphoma 6 protein isoform 2 
BCL6                  0.974   B-cell lymphoma 6 protein isoform 1 
BCL6                  0.974   B-cell lymphoma 6 protein isoform 1 
BCL6B                 0.205   B-cell CLL/lymphoma 6, member B (zinc finger protein...
ZNF227                0.096   zinc finger protein 227 
ZNF214                0.093   zinc finger protein 214 
ZNF726                0.092   PREDICTED: zinc finger protein 726 
ZNF726                0.092   PREDICTED: zinc finger protein 726 
ZNF726                0.092   PREDICTED: zinc finger protein 726 
ZNF845                0.092   zinc finger protein 845 
ZNF658                0.092   zinc finger protein 658 
ZNF107                0.091   zinc finger protein 107 
ZNF107                0.091   zinc finger protein 107 
ZNF235                0.091   zinc finger protein 93 homolog 
ZNF616                0.090   zinc finger protein 616 
ZNF737                0.090   zinc finger protein 737 
ZNF234                0.090   zinc finger protein 234 
ZNF234                0.090   zinc finger protein 234 
ZNF737                0.090   PREDICTED: zinc finger protein 737 
ZNF737                0.090   PREDICTED: zinc finger protein 737 
ZNF737                0.090   PREDICTED: zinc finger protein 737 
ZNF85                 0.090   zinc finger protein 85 
ZNF45                 0.089   zinc finger protein 45 
ZNF471                0.089   zinc finger protein 471 
ZNF251                0.089   zinc finger protein 251 
ZNF431                0.089   zinc finger protein 431 
LOC646864             0.089   PREDICTED: similar to hCG36734 
LOC646864             0.089   PREDICTED: similar to hCG36734 
LOC646864             0.089   PREDICTED: similar to hCG36734 
ZNF681                0.089   zinc finger protein 681 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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