Guide to the Human Genome
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Name: LOC100128139 Sequence: fasta or formatted (165aa) NCBI GI: 239757214
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {165aa} PREDICTED: hypothetical protein
alt mRNA {165aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         13           3
 C cysteine            2.4          4           1
 D aspartate           6.1         10           2
 E glutamate           6.1         10           2
 F phenylalanine       2.4          4           1
 G glycine            11.5         19           2
 H histidine           1.2          2           1
 I isoleucine          0.6          1           1
 K lysine              3.0          5           1
 L leucine             9.7         16           3
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline            12.1         20           2
 Q glutamine           7.3         12           1
 R arginine            9.7         16           3
 S serine             12.1         20           2
 T threonine           3.0          5           1
 V valine              1.8          3           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128139          1.000   PREDICTED: hypothetical protein 
LOC100128139          1.000   PREDICTED: hypothetical protein 
FLJ37078              0.060   hypothetical protein LOC222183 
COL7A1                0.054   alpha 1 type VII collagen precursor 
ABI1                  0.041   abl-interactor 1 isoform a 
SYN3                  0.038   synapsin III isoform IIIg 
SYN3                  0.038   synapsin III isoform IIIa 
FOXA1                 0.035   forkhead box A1 
KLF14                 0.035   Kruppel-like factor 14 
MAPK8IP2              0.032   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.032   mitogen-activated protein kinase 8 interacting protei...
MED1                  0.032   mediator complex subunit 1 
BAT2                  0.032   HLA-B associated transcript-2 
RPH3A                 0.032   rabphilin 3A homolog isoform 1 
RPH3A                 0.032   rabphilin 3A homolog isoform 2 
DMRTA2                0.032   DMRT-like family A2 
LOC729627             0.032   hypothetical protein LOC729627 
KCNH3                 0.028   potassium voltage-gated channel, subfamily H (eag-re...
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
PNPLA1                0.028   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.028   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.028   patatin-like phospholipase domain containing 1 isof...
LOC100292339          0.025   PREDICTED: hypothetical protein 
LOC100291311          0.025   PREDICTED: hypothetical protein XP_002347439 
LOC100288937          0.025   PREDICTED: hypothetical protein XP_002343343 
LOC100289410          0.025   PREDICTED: hypothetical protein XP_002344274 
DISP2                 0.025   dispatched B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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