Search of human proteins with 239757197

Search of human proteins with 239757197

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757197 PREDICTED: hypothetical protein XP_002345198 [Homo
sapiens]
         (139 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757197 PREDICTED: hypothetical protein XP_002345198 [Homo ...   304   2e-83
gi|239751704 PREDICTED: hypothetical protein [Homo sapiens]           301   1e-82
gi|239746208 PREDICTED: hypothetical protein XP_002343676 [Homo ...   301   1e-82
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    31   0.28 
gi|148727255 microtubule associated serine/threonine kinase fami...    29   1.1  
gi|62526026 cutA divalent cation tolerance homolog isoform 3 [Ho...    28   1.8  
gi|253795481 plexin B3 isoform 2 [Homo sapiens]                        28   2.4  
gi|11276067 snail 2 [Homo sapiens]                                     28   2.4  
gi|31542729 DEAH (Asp-Glu-Ala-His) box polypeptide 40 [Homo sapi...    27   4.1  
gi|14249622 ajuba isoform 1 [Homo sapiens]                             27   5.4  
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         27   5.4  
gi|240120161 G protein-coupled receptor 144 [Homo sapiens]             27   7.0  
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]            27   7.0  
gi|239741514 PREDICTED: hypothetical protein [Homo sapiens]            27   7.0  
gi|81174549 hypothetical protein LOC84792 [Homo sapiens]               27   7.0  
gi|31652264 RNA binding motif protein 26 [Homo sapiens]                27   7.0  
gi|4809279 annexin VII isoform 2 [Homo sapiens]                        26   9.1  
gi|31881693 butyrophilin, subfamily 2, member A2 isoform b [Homo...    26   9.1  

>gi|239757197 PREDICTED: hypothetical protein XP_002345198 [Homo
           sapiens]
          Length = 139

 Score =  304 bits (778), Expect = 2e-83
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTS 60
           MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTS
Sbjct: 1   MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTS 60

Query: 61  SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
           SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ
Sbjct: 61  SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120

Query: 121 PGRHSVYCASCSLGLESFW 139
           PGRHSVYCASCSLGLESFW
Sbjct: 121 PGRHSVYCASCSLGLESFW 139


>gi|239751704 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score =  301 bits (770), Expect = 1e-82
 Identities = 138/139 (99%), Positives = 138/139 (99%)

Query: 1   MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTS 60
           MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRD TS
Sbjct: 1   MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS 60

Query: 61  SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
           SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ
Sbjct: 61  SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120

Query: 121 PGRHSVYCASCSLGLESFW 139
           PGRHSVYCASCSLGLESFW
Sbjct: 121 PGRHSVYCASCSLGLESFW 139


>gi|239746208 PREDICTED: hypothetical protein XP_002343676 [Homo
           sapiens]
          Length = 139

 Score =  301 bits (770), Expect = 1e-82
 Identities = 138/139 (99%), Positives = 138/139 (99%)

Query: 1   MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTS 60
           MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRD TS
Sbjct: 1   MQVLHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDRTS 60

Query: 61  SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120
           SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ
Sbjct: 61  SRHLVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQGLQ 120

Query: 121 PGRHSVYCASCSLGLESFW 139
           PGRHSVYCASCSLGLESFW
Sbjct: 121 PGRHSVYCASCSLGLESFW 139


>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
           4 [Homo sapiens]
          Length = 1039

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 14/77 (18%)

Query: 26  ESTEFRAEPPNGFPKGLCPVA-------FPPGRDKGPRDHTSSRHLVSSVWLGKAPEPLI 78
           E TE  A PP   P+   P A         P     PRD  + RH  +  W  +A  PL 
Sbjct: 448 EPTE--AAPPRSGPQSPAPAAPAQPGATLAPPTPPRPRDGGTPRHSRALSWAARAARPLP 505

Query: 79  L-----PPSRRLLNFPP 90
           L     PP R  +  PP
Sbjct: 506 LFLGRAPPPRPAVEQPP 522


>gi|148727255 microtubule associated serine/threonine kinase family
            member 4 isoform a [Homo sapiens]
          Length = 2434

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 35   PNGFPKGLCPVAFPPGRDKGPRDHTSSRHLV-SSVWLGKAP--EPLILPPSRRLLNFP 89
            P+G  +   P   P    K   D TS+R L  SS+ + K+   EP  LPPSR L N P
Sbjct: 1642 PSGDVRASVPPVLPSSSGK-KNDTTSARELSPSSLKMNKSYLLEPWFLPPSRGLQNSP 1698


>gi|62526026 cutA divalent cation tolerance homolog isoform 3 [Homo
           sapiens]
          Length = 179

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 18/72 (25%)

Query: 64  LVSSVWLGKAPEPLILPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQA----QGL 119
           L+S VW+     P +LP + RLL  P  L+ +           GS PT PS A     G 
Sbjct: 18  LLSFVWM-----PALLPVASRLLLLPRVLLTM---------ASGSPPTQPSPASDSGSGY 63

Query: 120 QPGRHSVYCASC 131
            PG  S    +C
Sbjct: 64  VPGSVSAAFVTC 75


>gi|253795481 plexin B3 isoform 2 [Homo sapiens]
          Length = 1932

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 66  SSVWLGKAPEPLILPPSRRLLNFPPFLMILFIA---LCLLGSHLGSGPTYPSQAQGLQPG 122
           S  WL KAP     PP      F   L++L ++   L L G+H  S P        L PG
Sbjct: 32  SRPWLPKAPVMARWPP------FGLCLLLLLLSPPPLPLTGAHRFSAPNTTLNHLALAPG 85

Query: 123 RHSVY 127
           R ++Y
Sbjct: 86  RGTLY 90


>gi|11276067 snail 2 [Homo sapiens]
          Length = 268

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 23  MWHESTEFRAEPPNG------FPKGLCPVAFPPGRDKGPRDHTSSRHLVS 66
           +W  +  F A+ PNG      +   L  V+ PP  D   +DH+ S   +S
Sbjct: 58  VWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGSESPIS 107


>gi|31542729 DEAH (Asp-Glu-Ala-His) box polypeptide 40 [Homo
           sapiens]
          Length = 779

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 4   LHGHQFSNQWDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTSSRH 63
           +H H  S   +Q  ++ W ++HE           + + +CP+ +   RD  P+ H  + H
Sbjct: 650 VHIHPSSALHEQETKLEWIIFHEVLV----TTKVYARIVCPIRYEWVRDLLPKLHEFNAH 705

Query: 64  LVSSV 68
            +SSV
Sbjct: 706 DLSSV 710


>gi|14249622 ajuba isoform 1 [Homo sapiens]
          Length = 538

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 107 GSGPTYPSQAQGLQPGRHSVY-CASCSLG 134
           G G   P + +G QPGRHSV     C++G
Sbjct: 245 GVGAAGPLERRGAQPGRHSVTGYGDCAVG 273


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 31  RAEPPNGFPKGLCPVAFPPGRDKGPRDHTSSRHLVSSVWLGKAPEPLILPPSRRLLNFPP 90
           +A P    P GL P   P   D  P   +SS   +     G AP P   PP    LN P 
Sbjct: 173 QAFPTLAGPGGLFP---PRLADPVPSGGSSSPRFLPR---GNAPSPAPPPPPAISLNAPS 226

Query: 91  FLMILFIALCLLGSHLGSGP 110
           +     +   L+ S LGS P
Sbjct: 227 YNWGAALRSSLVPSDLGSPP 246


>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
          Length = 963

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 55  PRDHTSSRHLVSSVWLGKAPEPLILPPSRR 84
           P D   +  L   VW+G+   PL  PP RR
Sbjct: 84  PPDGVLASRLRDPVWVGQREAPLRRPPQRR 113


>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 17/86 (19%)

Query: 31  RAEPPNGFPKGLCPVAFPPG-RDKGPRDHTSSRHLVSSVWLGKA------PEPLILPPSR 83
           R  PP G P   CP    PG R   P    +      +   GKA      P P      R
Sbjct: 112 RPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPA---GKAAADRGRPGPAAGRRVR 168

Query: 84  RLLNFPPFLMILF-------IALCLL 102
           R  +FPPFL+          +ALCLL
Sbjct: 169 RSPSFPPFLLAQTRLGRTGPLALCLL 194


>gi|239741514 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 390

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 13  WDQSLRIFWDMWHESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTSSRHLVSSVWLGK 72
           W Q L I W  W   +  +   P+    G     +P   +  P D  S   +VS  W   
Sbjct: 197 WTQCLPISWRHWSAHSFLK---PSSRGPGQAS-RWPLQDELLPSDGISRPQMVSGRW--- 249

Query: 73  APE-----PLILPPSRRLL 86
           AP      PL+ PPS+RLL
Sbjct: 250 APPCHCCMPLLGPPSQRLL 268


>gi|81174549 hypothetical protein LOC84792 [Homo sapiens]
          Length = 259

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 26  ESTEFRAEPPNGFPKGLCPVAFPPGRDKGPRDHTSSRHLVSSVWLGKAPEPLILPPSRRL 85
           E   F+ +PP+ FPKGL           G     +  H + S  L   PE L+   ++R+
Sbjct: 163 EMGSFQDDPPSAFPKGL-----------GSELEPACLHSILSATLHVYPEVLLSEETKRI 211


>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
          Length = 980

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 34  PPNGFPKGLCPVAFPP---------GRDKGPRDHTSSRHLVSSVWLGKAPEPLILPPS 82
           PP   P  L PV  PP         G D  P   TSS   V +  +   P P   PPS
Sbjct: 366 PPGPLPPSLPPVTGPPPPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPP--APPS 421


>gi|4809279 annexin VII isoform 2 [Homo sapiens]
          Length = 488

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 35  PNGFPKGLCPVAFPPGRDKGP----RDHTSSRHLVSSVWLGKAPEP 76
           P GFP G  P  +P G+   P     D  SS  + S V L  + EP
Sbjct: 123 PGGFPGGQMPSQYPGGQPTYPSQINTDSFSSYPVFSPVSLDYSSEP 168


>gi|31881693 butyrophilin, subfamily 2, member A2 isoform b [Homo
           sapiens]
          Length = 407

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 79  LPPSRRLLNFPPFLMILFIALCLLGSHLGSGPTYPSQAQ 117
           LP S  LL     L++L ++LC L S LGS P    +AQ
Sbjct: 11  LPASLLLL-----LLLLLLSLCALVSGLGSKPLIEIKAQ 44


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.486 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,563,565
Number of Sequences: 37866
Number of extensions: 408021
Number of successful extensions: 883
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 18
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.