Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291747 Sequence: fasta or formatted (191aa) NCBI GI: 239757167
Description:

PREDICTED: hypothetical protein XP_002345192

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         24           2
 C cysteine            2.6          5           2
 D aspartate           1.6          3           1
 E glutamate           9.4         18           2
 F phenylalanine       1.0          2           1
 G glycine            14.1         27           4
 H histidine           1.0          2           1
 I isoleucine          1.6          3           1
 K lysine              1.6          3           1
 L leucine             8.9         17           1
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline             9.9         19           3
 Q glutamine           5.8         11           2
 R arginine            8.4         16           1
 S serine              8.9         17           2
 T threonine           2.6          5           1
 V valine              4.7          9           1
 W tryptophan          4.2          8           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345192 
LOC100289639          1.000   PREDICTED: hypothetical protein 
LOC100289639          1.000   PREDICTED: hypothetical protein XP_002343670 
FBLN2                 0.040   fibulin 2 isoform b precursor 
FBLN2                 0.040   fibulin 2 isoform a precursor 
FZD8                  0.037   frizzled 8 
MLL                   0.024   myeloid/lymphoid or mixed-lineage leukemia protein [...
TMEM181               0.024   G protein-coupled receptor 178 
LOC100292143          0.021   PREDICTED: hypothetical protein 
LOC100132261          0.021   PREDICTED: similar to hCG2023245 
JMY                   0.021   junction-mediating and regulatory protein 
VASP                  0.021   vasodilator-stimulated phosphoprotein 
LOC100292048          0.021   PREDICTED: hypothetical protein XP_002344877 
FAM109A               0.021   hypothetical protein LOC144717 
DNMT3A                0.021   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.021   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
KCNN1                 0.019   potassium intermediate/small conductance calcium-act...
LOC100289661          0.019   PREDICTED: hypothetical protein 
LOC100289661          0.019   PREDICTED: hypothetical protein XP_002343723 
TMEM151A              0.019   transmembrane protein 151A 
STRN4                 0.019   zinedin isoform 2 
STRN4                 0.019   zinedin isoform 1 
ZNF703                0.016   zinc finger protein 703 
LOC100291574          0.016   PREDICTED: hypothetical protein XP_002345618 
LOC100287418          0.016   PREDICTED: hypothetical protein XP_002342289 
SYNGAP1               0.016   synaptic Ras GTPase activating protein 1 
RECQL5                0.016   RecQ protein-like 5 isoform 1 
FOXD2                 0.016   forkhead box D2 
LOC100128943          0.016   PREDICTED: similar to hCG2038853 
LOC100128943          0.016   PREDICTED: similar to hCG2038853 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press