Guide to the Human Genome
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Search of human proteins with 239757088

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757088 PREDICTED: hypothetical protein [Homo sapiens]
         (89 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757088 PREDICTED: hypothetical protein [Homo sapiens]           178   7e-46
gi|239751594 PREDICTED: hypothetical protein XP_002347932 [Homo ...   178   7e-46
gi|239746109 PREDICTED: hypothetical protein XP_002344199 [Homo ...   178   7e-46
gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens]                    29   0.69 
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            29   0.91 
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            29   0.91 
gi|148539593 sushi domain containing 4 isoform a [Homo sapiens]        28   1.2  
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re...    28   1.2  
gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatas...    28   1.5  
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]             28   1.5  
gi|239753343 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239747910 PREDICTED: hypothetical protein XP_002346478 [Homo ...    28   2.0  
gi|239741805 PREDICTED: hypothetical protein XP_002342319 [Homo ...    28   2.0  
gi|98986457 host cell factor 1 [Homo sapiens]                          28   2.0  
gi|26051235 nucleoporin 133kDa [Homo sapiens]                          28   2.0  
gi|171906567 peripheral benzodiazepine receptor-associated prote...    28   2.0  
gi|171906559 peripheral benzodiazepine receptor-associated prote...    28   2.0  
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo...    27   2.6  
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]            27   2.6  
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]            27   2.6  
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ...    27   2.6  
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo...    27   2.6  
gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]            27   2.6  
gi|42821112 serine/threonine protein kinase pim-2 [Homo sapiens]       27   2.6  
gi|8923477 transmembrane protein 160 [Homo sapiens]                    27   2.6  
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]         27   3.4  
gi|239755431 PREDICTED: hypothetical protein [Homo sapiens]            27   3.4  
gi|239753468 PREDICTED: hypothetical protein [Homo sapiens]            27   3.4  
gi|239749883 PREDICTED: hypothetical protein XP_002347194 [Homo ...    27   3.4  
gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo ...    27   3.4  

>gi|239757088 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 89

 Score =  178 bits (452), Expect = 7e-46
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL 60
          MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL
Sbjct: 1  MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL 60

Query: 61 TPEDPAGGSRLGPGNTASAPSFLGSSLGS 89
          TPEDPAGGSRLGPGNTASAPSFLGSSLGS
Sbjct: 61 TPEDPAGGSRLGPGNTASAPSFLGSSLGS 89


>gi|239751594 PREDICTED: hypothetical protein XP_002347932 [Homo
          sapiens]
          Length = 89

 Score =  178 bits (452), Expect = 7e-46
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL 60
          MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL
Sbjct: 1  MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL 60

Query: 61 TPEDPAGGSRLGPGNTASAPSFLGSSLGS 89
          TPEDPAGGSRLGPGNTASAPSFLGSSLGS
Sbjct: 61 TPEDPAGGSRLGPGNTASAPSFLGSSLGS 89


>gi|239746109 PREDICTED: hypothetical protein XP_002344199 [Homo
          sapiens]
          Length = 89

 Score =  178 bits (452), Expect = 7e-46
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL 60
          MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL
Sbjct: 1  MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVAL 60

Query: 61 TPEDPAGGSRLGPGNTASAPSFLGSSLGS 89
          TPEDPAGGSRLGPGNTASAPSFLGSSLGS
Sbjct: 61 TPEDPAGGSRLGPGNTASAPSFLGSSLGS 89


>gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens]
          Length = 457

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 18/48 (37%), Positives = 21/48 (43%)

Query: 26 WLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDPAGGSRLGP 73
          W R +V   A    KPAA    LRL    R P +  P D A    +GP
Sbjct: 7  WRRAAVAVTAAPGPKPAAPTRGLRLRVGDRAPQSAVPADTAAAPEVGP 54


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 8   PAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDPAG 67
           PA +  ++ G+ A  G R  RP  Q A   R +P A   R R    + +     P   A 
Sbjct: 905 PAAAAAAAQGVRAAQG-RAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAAL 963

Query: 68  GSRLGPGNTASA 79
           G R G G    A
Sbjct: 964 GRRRGGGQAVGA 975


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 8   PAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDPAG 67
           PA +  ++ G+ A  G R  RP  Q A   R +P A   R R    + +     P   A 
Sbjct: 905 PAAAAAAAQGVRAAQG-RAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAAL 963

Query: 68  GSRLGPGNTASA 79
           G R G G    A
Sbjct: 964 GRRRGGGQAVGA 975


>gi|148539593 sushi domain containing 4 isoform a [Homo sapiens]
          Length = 490

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 7   GPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDP- 65
           GP  S  S P    V G+  + PS  EA    G  A     +  VG+   P+ +  + P 
Sbjct: 355 GPPRSSSSDPDFVVVDGVPVMLPSYDEAV-SGGLSALGPGYMASVGQ-GCPLPVDDQSPP 412

Query: 66  ----AGGSRLGPGNTASAPSFLGSS 86
               +G +  GPG + +  S  GSS
Sbjct: 413 AYPGSGDTDTGPGESETCDSVSGSS 437


>gi|38569493 potassium voltage-gated channel, subfamily H
           (eag-related), member 3 [Homo sapiens]
          Length = 1083

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 26  WLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDPAGGSRLGPGNTASAPS 81
           W     +E      +   + W   L  RL  P  L    PAGG+  G  +  S+ S
Sbjct: 378 WFYIGQREIESSESELPEIGWLQELARRLETPYYLVGRRPAGGNSSGQSDNCSSSS 433


>gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatase,
           A [Homo sapiens]
          Length = 638

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 33/110 (30%), Positives = 38/110 (34%), Gaps = 43/110 (39%)

Query: 15  SPGLAAVSGLRWLRPSVQE-----------------AAPDRGK----------------- 40
           SPGLA   GL  LRPS +E                  APDR                   
Sbjct: 520 SPGLARFPGLA-LRPSSRERRGASRSPSPQSRRLSRVAPDRSSNGSSRGSSEEGPSGLPG 578

Query: 41  ----PAALAWRLRLVGRLRVPVALTPEDPAGGSRLGPGNTASAPSFLGSS 86
               P A+   L L+  LR+       DP GG   GP   A AP+ L  S
Sbjct: 579 PWAFPPAVPRSLGLLPALRLETV----DPGGGGSWGPDREALAPNSLSPS 624


>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
          Length = 880

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 7   GPAPSVGSSPGLAAVSGLRW-LRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDP 65
           GP+P +  S G A   GLR  LR   + A     +P ++     + G  ++P+ L P  P
Sbjct: 454 GPSP-LPRSFGPAECLGLRLPLRDEAKGAFFQFREPESVRSPTPVQGLTKIPIRLPPARP 512

Query: 66  AGGSRLGPGNTASAP 80
               R  PG T+ +P
Sbjct: 513 PTPGRSFPGATSGSP 527


>gi|239753343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 26 WLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDPAGG-------SRLGPGNTAS 78
          W+ P      P RG P  L+ RL  + +   P++L PE  A         S++   + +S
Sbjct: 2  WIAP-----IPARGMPRVLSARLNPLRKKPRPISLVPESLADSCISINLLSQMFSSDLSS 56

Query: 79 APSFLGSSLGS 89
           PSF  S L +
Sbjct: 57 YPSFSKSLLAT 67


>gi|239747910 PREDICTED: hypothetical protein XP_002346478 [Homo
          sapiens]
          Length = 155

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 26 WLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDPAGG-------SRLGPGNTAS 78
          W+ P      P RG P  L+ RL  + +   P++L PE  A         S++   + +S
Sbjct: 2  WIAP-----IPARGMPRVLSARLNPLRKKPRPISLVPESLADSCISINLLSQMFSSDLSS 56

Query: 79 APSFLGSSLGS 89
           PSF  S L +
Sbjct: 57 YPSFSKSLLAT 67


>gi|239741805 PREDICTED: hypothetical protein XP_002342319 [Homo
          sapiens]
          Length = 155

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 26 WLRPSVQEAAPDRGKPAALAWRLRLVGRLRVPVALTPEDPAGG-------SRLGPGNTAS 78
          W+ P      P RG P  L+ RL  + +   P++L PE  A         S++   + +S
Sbjct: 2  WIAP-----IPARGMPRVLSARLNPLRKKPRPISLVPESLADSCISINLLSQMFSSDLSS 56

Query: 79 APSFLGSSLGS 89
           PSF  S L +
Sbjct: 57 YPSFSKSLLAT 67


>gi|98986457 host cell factor 1 [Homo sapiens]
          Length = 2035

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 1   MSSTTSGPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLVG-RLRVPVA 59
           M+S T  PA  + + P +A   G + +   V + AP  G+P  +   + + G RL  PV 
Sbjct: 804 MTSGTGAPAKIITAVPKIATGHGQQGVTQVVLKGAP--GQPGTILRTVPMGGVRLVTPVT 861

Query: 60  LTPEDPAGGSRLGPGNT 76
           ++   PA  + +  G T
Sbjct: 862 VSAVKPAVTTLVVKGTT 878


>gi|26051235 nucleoporin 133kDa [Homo sapiens]
          Length = 1156

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 57 PVALTPEDPAGGSR------LGPGNTASAPSFLGSSLGS 89
          P A +P  P  GSR      LGPG+T    S  G  LGS
Sbjct: 3  PAAPSPRTPGTGSRRGPLAGLGPGSTPRTASRKGLPLGS 41


>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
            isoform b [Homo sapiens]
          Length = 1797

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 23   GLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRV------PVALTPEDPAGGSRL 71
            G+R LRPS  E  P R     LA++  L  R+ V      PV+++P   AG   L
Sbjct: 1539 GVRVLRPSTAELVPARSPSETLAYQ-HLPVRIFVALFDYDPVSMSPNPDAGEEEL 1592


>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
            isoform a [Homo sapiens]
          Length = 1857

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 23   GLRWLRPSVQEAAPDRGKPAALAWRLRLVGRLRV------PVALTPEDPAGGSRL 71
            G+R LRPS  E  P R     LA++  L  R+ V      PV+++P   AG   L
Sbjct: 1599 GVRVLRPSTAELVPARSPSETLAYQ-HLPVRIFVALFDYDPVSMSPNPDAGEEEL 1652


>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 7   GPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALA 45
           GPA   G +PGL A +G     P+  +  P  G PAA A
Sbjct: 166 GPASGPGVTPGLGAPAGAPGPLPAPSQTPP--GPPAAAA 202


>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
          Length = 306

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 49  RLVGRLRVPVALTPEDPAGGSRLGPGNTASAPSFLGSSLG 88
           RL G  R P  LTP  P   SR  P + A A +  GS+ G
Sbjct: 178 RLRGVRRAPAPLTPPPPPPPSRCLPQDEACADTGSGSAEG 217


>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 28  RPSVQEAAPDRGKPAALA-----WRLRLVGRLRVPVALTPEDPAGGSRLGPGNTASA 79
           RP      P R  PA  +      R R  G  R+P ALTP  P   +R G G  A A
Sbjct: 56  RPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARA 112


>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
           sapiens]
          Length = 382

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 28  RPSVQEAAPDRGKPAALA-----WRLRLVGRLRVPVALTPEDPAGGSRLGPGNTASA 79
           RP      P R  PA  +      R R  G  R+P ALTP  P   +R G G  A A
Sbjct: 56  RPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARA 112


>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 7   GPAPSVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALA 45
           GPA   G +PGL A +G     P+  +  P  G PAA A
Sbjct: 166 GPASGPGVTPGLGAPAGAPGPLPAPSQTPP--GPPAAAA 202


>gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]
          Length = 358

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 49  RLVGRLRVPVALTPEDPAGGSRLGPGNTASAPSFLGSSLG 88
           RL G  R P  LTP  P   SR  P + A A +  GS+ G
Sbjct: 230 RLRGVRRAPAPLTPPPPPPPSRCLPQDEACADTGSGSAEG 269


>gi|42821112 serine/threonine protein kinase pim-2 [Homo sapiens]
          Length = 311

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 9   APSVGSSPGLAAVSGLRWLRPSVQEAA--PDRGKPAALAWRL 48
           AP   S P L  +    W++   ++    P +G PA LAW L
Sbjct: 268 APKPSSRPSLEEILLDPWMQTPAEDVPLNPSKGGPAPLAWSL 309


>gi|8923477 transmembrane protein 160 [Homo sapiens]
          Length = 188

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 11  SVGSSPGLAAVSGLRWLRPSVQEAAPDRGKPAALAWRLRL---VGRLRVPVALTPEDPAG 67
           S   + GLAA+ G   L              A+L W   +   +G+L + V L PED   
Sbjct: 114 SASYAVGLAALRGPMQLTLGGAAVGAGAVLAASLLWACAVGLYMGQLELDVELVPEDDGT 173

Query: 68  GSRLGPGNTASAP 80
            S  GP      P
Sbjct: 174 ASAEGPDEAGRPP 186


>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
          Length = 365

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 4   TTSGPAPSVGSSPGLAA---VSGLRWLRPSVQEAAPDRGKP---AALAWRLRLVGRLRVP 57
           +T+ P P +GS P L     V    W R   Q AAP R  P   ++L+  LR  G    P
Sbjct: 237 STATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPG---AP 293

Query: 58  VALTPEDPAGGSRLGP 73
                  P   S  GP
Sbjct: 294 ATFLRPSPIPCSSPGP 309


>gi|239755431 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 94

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 10/46 (21%)

Query: 15 SPGL---------AAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLV 51
          SPGL         A + GLRW R      A D GKP  LA   RLV
Sbjct: 41 SPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKP-GLAGMQRLV 85


>gi|239753468 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 52 GRLRVPVALTPEDPAGGSRLGPGNTASAPSFLGSS 86
          G  R P  + P  PAG  + GPG   S PS  GSS
Sbjct: 30 GEDREPTRVDP--PAGEVQGGPGTHKSGPSLWGSS 62


>gi|239749883 PREDICTED: hypothetical protein XP_002347194 [Homo
          sapiens]
          Length = 94

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 10/46 (21%)

Query: 15 SPGL---------AAVSGLRWLRPSVQEAAPDRGKPAALAWRLRLV 51
          SPGL         A + GLRW R      A D GKP  LA   RLV
Sbjct: 41 SPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKP-GLAGMQRLV 85


>gi|239748036 PREDICTED: hypothetical protein XP_002346497 [Homo
          sapiens]
          Length = 123

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 52 GRLRVPVALTPEDPAGGSRLGPGNTASAPSFLGSS 86
          G  R P  + P  PAG  + GPG   S PS  GSS
Sbjct: 67 GEDREPTRVDP--PAGEVQGGPGTHKSGPSLWGSS 99


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.129    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,532,892
Number of Sequences: 37866
Number of extensions: 228802
Number of successful extensions: 829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 132
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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