Guide to the Human Genome
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Name: LOC100290561 Sequence: fasta or formatted (94aa) NCBI GI: 239749883
Description:

PREDICTED: hypothetical protein XP_002347194

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         14           3
 C cysteine            0.0          0           0
 D aspartate           4.3          4           2
 E glutamate           3.2          3           1
 F phenylalanine       1.1          1           1
 G glycine            13.8         13           2
 H histidine           1.1          1           1
 I isoleucine          0.0          0           0
 K lysine              3.2          3           1
 L leucine            13.8         13           2
 M methionine          3.2          3           1
 N asparagine          1.1          1           1
 P proline            13.8         13           1
 Q glutamine           3.2          3           1
 R arginine            5.3          5           1
 S serine              6.4          6           1
 T threonine           4.3          4           1
 V valine              3.2          3           1
 W tryptophan          3.2          3           1
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347194 
LOC100289594          1.000   PREDICTED: hypothetical protein XP_002343050 
LOC100292321          0.988   PREDICTED: hypothetical protein 
LOC100133885          0.052   PREDICTED: hypothetical protein 
HES7                  0.041   hairy and enhancer of split 7 
C1orf127              0.041   hypothetical protein LOC148345 
GPR153                0.029   G protein-coupled receptor 153 
WDR81                 0.029   PREDICTED: WD repeat domain 81 
WDR81                 0.029   PREDICTED: WD repeat domain 81 
LOC100129566          0.029   PREDICTED: hypothetical protein LOC100129566 
WDR81                 0.029   PREDICTED: WD repeat domain 81 
LOC100129566          0.029   PREDICTED: hypothetical protein LOC100129566 
NKX1-2                0.023   NK1 homeobox 2 
KHDRBS1               0.023   KH domain containing, RNA binding, signal transductio...
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
NKX1-2                0.017   PREDICTED: NK1 homeobox 2 
LOC100288796          0.017   PREDICTED: hypothetical protein 
NKX1-2                0.017   PREDICTED: NK1 homeobox 2 
LOC202781             0.017   PREDICTED: hypothetical protein 
LOC100288796          0.017   PREDICTED: hypothetical protein XP_002343710 
NKX1-2                0.017   PREDICTED: NK1 homeobox 2 
LOC202781             0.017   PREDICTED: hypothetical protein 
LOC202781             0.017   PREDICTED: hypothetical protein 
SNRPC                 0.017   small nuclear ribonucleoprotein polypeptide C 
COL4A2                0.017   alpha 2 type IV collagen preproprotein 
FOXN4                 0.017   forkhead box N4 
TCERG1                0.017   transcription elongation regulator 1 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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