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Search of human proteins with 239757016
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757016 PREDICTED: similar to RNA polymerase II
transcription factor SIII subunit A3, partial [Homo sapiens]
(78 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757016 PREDICTED: similar to RNA polymerase II transcripti... 160 3e-40
gi|154816198 transcription elongation factor B polypeptide 3C-li... 156 3e-39
gi|156938279 transcription elongation factor B polypeptide 3C [H... 156 3e-39
gi|45439357 elongin A2 [Homo sapiens] 101 1e-22
gi|208022641 elongin A [Homo sapiens] 53 6e-08
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|124430752 kinesin family member 26B [Homo sapiens] 36 0.006
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 35 0.013
gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens] 35 0.013
gi|4507161 SRY-box 11 [Homo sapiens] 35 0.013
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 35 0.013
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 35 0.013
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 35 0.013
gi|91208420 bassoon protein [Homo sapiens] 34 0.029
gi|5032007 purine-rich element binding protein A [Homo sapiens] 33 0.049
gi|19923343 Cbp/p300-interacting transactivator, with Glu/Asp-ri... 33 0.049
gi|4504809 jun B proto-oncogene [Homo sapiens] 33 0.049
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 33 0.049
gi|89257348 homeo box HB9 [Homo sapiens] 33 0.049
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 33 0.049
gi|145309320 forkhead box Q1 [Homo sapiens] 33 0.064
gi|38788260 bromodomain PHD finger transcription factor isoform ... 33 0.064
gi|38788274 bromodomain PHD finger transcription factor isoform ... 33 0.064
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 33 0.064
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 33 0.064
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 33 0.064
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 33 0.064
gi|4507741 twist [Homo sapiens] 32 0.084
>gi|239757016 PREDICTED: similar to RNA polymerase II
transcription factor SIII subunit A3, partial [Homo
sapiens]
Length = 78
Score = 160 bits (404), Expect = 3e-40
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV 60
SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV
Sbjct: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV 60
Query: 61 APLMAKAIRDYKGRFSRR 78
APLMAKAIRDYKGRFSRR
Sbjct: 61 APLMAKAIRDYKGRFSRR 78
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 156 bits (395), Expect = 3e-39
Identities = 77/78 (98%), Positives = 77/78 (98%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV 60
SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGS SGGGSSNRHAAPADKTRKQAAKKV
Sbjct: 469 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPADKTRKQAAKKV 528
Query: 61 APLMAKAIRDYKGRFSRR 78
APLMAKAIRDYKGRFSRR
Sbjct: 529 APLMAKAIRDYKGRFSRR 546
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 156 bits (395), Expect = 3e-39
Identities = 77/78 (98%), Positives = 77/78 (98%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV 60
SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGS SGGGSSNRHAAPADKTRKQAAKKV
Sbjct: 469 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPADKTRKQAAKKV 528
Query: 61 APLMAKAIRDYKGRFSRR 78
APLMAKAIRDYKGRFSRR
Sbjct: 529 APLMAKAIRDYKGRFSRR 546
>gi|45439357 elongin A2 [Homo sapiens]
Length = 753
Score = 101 bits (251), Expect = 1e-22
Identities = 57/93 (61%), Positives = 59/93 (63%), Gaps = 15/93 (16%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGG---------------SSNRH 45
SAG ADP NGE++PA KPAGSS PS GG S SSN H
Sbjct: 661 SAGDADPENGEIKPASKPAGSSHTPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEH 720
Query: 46 AAPADKTRKQAAKKVAPLMAKAIRDYKGRFSRR 78
AAPA KTRKQAAKKVAPLMAKAIRDYK RFSRR
Sbjct: 721 AAPAAKTRKQAAKKVAPLMAKAIRDYKRRFSRR 753
>gi|208022641 elongin A [Homo sapiens]
Length = 798
Score = 52.8 bits (125), Expect = 6e-08
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGL----GDGDGGSGSGGGSSNRHAAPADKT---- 52
+ GAA P +++PAP P GSS A + + + G +S+ H AP +
Sbjct: 711 TGGAAVPEKIKIKPAPYPMGSSHASASSISFNPSPEEPAYDGPSTSSAHLAPVVSSTVSY 770
Query: 53 --RKQAAKKVAPLMAKAIRDYKGRFSRR 78
RK KK+AP+MAK I+ +K RFSRR
Sbjct: 771 DPRKPTVKKIAPMMAKTIKAFKNRFSRR 798
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 7 PGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAP 62
PG+G+ AP P G A +G G GG GSGG S+ R A + AA V P
Sbjct: 19 PGDGD--EAPGPGGGEGAAAG--GGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGP 70
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 7 PGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAP 62
PG+G+ AP P G A +G G GG GSGG S+ R A + AA V P
Sbjct: 19 PGDGD--EAPGPGGGEGAAAG--GGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGP 70
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 7 PGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAP 62
PG+G+ AP P G A +G G GG GSGG S+ R A + AA V P
Sbjct: 19 PGDGD--EAPGPGGGEGAAAG--GGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGP 70
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/42 (50%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSS 42
S G A PG G P GS G G G GSGSGGGSS
Sbjct: 84 SPGPASPGIGTSSP-----GSLGGSPGFGTGSPGSGSGGGSS 120
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 11 EMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAP 62
E EP P G+ L G GG+G GGG + P R+++ ++ +P
Sbjct: 9 EGEPGT-PGGAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASP 59
>gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]
Length = 735
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 5 ADPGNGEMEPAPKPAGSSQAPSGLGDGD----GGSGSGGGSSNRHAAPADKTRKQAAKKV 60
A+PG GE +P P+PAG + +PSG DGD + S GG+ + AA + A +
Sbjct: 92 AEPG-GEGDPGPEPAG-TPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQ 149
Query: 61 APLMAKAI 68
P +A+ +
Sbjct: 150 EPPVAEPV 157
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 11 EMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAPLMAKA 67
+M+P+ KP+ +SQ+P G GG +GGG A KT K ++KK L A A
Sbjct: 125 KMDPSAKPS-ASQSPEKSAAGGGGGSAGGG------AGGAKTSKGSSKKCGKLKAPA 174
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 5 ADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAPL 63
ADP N P P P + G+G G GG+G GGG +R + + + PL
Sbjct: 14 ADPANEPPPPGPMPPAPRRG-GGVGVGGGGTGVGGGDRDRDSGVVGARPRASPPPQGPL 71
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 5 ADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAPL 63
ADP N P P P + G+G G GG+G GGG +R + + + PL
Sbjct: 14 ADPANEPPPPGPMPPAPRRG-GGVGVGGGGTGVGGGDRDRDSGVVGARPRASPPPQGPL 71
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 5 ADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAPL 63
ADP N P P P + G+G G GG+G GGG +R + + + PL
Sbjct: 14 ADPANEPPPPGPMPPAPRRG-GGVGVGGGGTGVGGGDRDRDSGVVGARPRASPPPQGPL 71
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 7 PGNGEMEPAPKPAGSSQAPSG-----------LGDGDG-GSGSGGGSSNRHAAPADKTRK 54
PG G +P PAG Q P+ G G G G G G GS++R P +
Sbjct: 29 PGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEPLGN 88
Query: 55 QAAKKVAPLMAKA 67
Q A P A A
Sbjct: 89 QRAASPTPKQASA 101
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 14 PAPKPAGSSQAPSGLGDGDGGSG--SGGGSSNRHAAPADKTRKQ 55
PAP P + P+ G GGSG S G A+ ++ RKQ
Sbjct: 2326 PAPAPLAGQKPPADAAPG-GGSGALSRPGFEKEEASQEERQRKQ 2368
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 18 PAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV 60
P S + G G G GG GSGGG +T++ A+K+V
Sbjct: 24 PGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQELASKRV 66
>gi|19923343 Cbp/p300-interacting transactivator, with Glu/Asp-rich
carboxy-terminal domain, 2 [Homo sapiens]
Length = 270
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPA 49
S G++ PG P +GSS SG G G SG G GS N A+ A
Sbjct: 161 SGGSSTPGGSGGSSTPGGSGSS---SGGGAGSSNSGGGSGSGNMPASVA 206
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 16 PKPAGSSQAPSGLG----DGDGGSGSGGGSSNRHA 46
PK +G S P G G G GS SGGG+ + ++
Sbjct: 158 PKHSGGSSTPGGSGGSSTPGGSGSSSGGGAGSSNS 192
>gi|4504809 jun B proto-oncogene [Homo sapiens]
Length = 347
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 9 NGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPAD 50
NG + P P G P G G G G G+GGG + AD
Sbjct: 96 NGVITTTPTPPGQYFYPRGGGSGGGAGGAGGGVTEEQEGFAD 137
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 20 GSSQAPSGLGDGDGGSGSG-GGSSNRHAAPADKTRKQAAKKV 60
G + SG G GGSGSG GGSS+ ++ + K+++Q A ++
Sbjct: 204 GGGGSSSGSSGGGGGSGSGSGGSSSSSSSSSKKSKEQKALRL 245
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 10 GEMEPA-PKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAP 48
G EPA P+ AG P G G G G +GSGGG P
Sbjct: 63 GCFEPADPEGAGLLLPPPG-GGGGGSAGSGGGGGGGVGVP 101
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 5 ADP-GNGEMEPAPKPAGSSQAPSGLGDGDG--------GSGSGGGSSNRHAAPA 49
ADP G G + P P G A SG G G G GS GG + + PA
Sbjct: 68 ADPEGAGLLLPPPGGGGGGSAGSGGGGGGGVGVPGLLVGSAGVGGDPSLSSLPA 121
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 33.1 bits (74), Expect = 0.049
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 4 AADP---GNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGG--------SSNRHAAPADKT 52
A DP + + P + A SG G G GG G+ GG SS AAPAD+
Sbjct: 14 AVDPPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRL 73
Query: 53 RKQA 56
R ++
Sbjct: 74 RAES 77
Score = 32.3 bits (72), Expect = 0.084
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 1 SAGAADPGNGEMEPAPKPAGSSQAPS------------------GLGDGDGGSGSGGGSS 42
++G+ P + E AP +++PS G G G GG+G G G
Sbjct: 54 TSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGP 113
Query: 43 NRHAAPADKTRKQAAKKVA 61
+ HA P AA A
Sbjct: 114 HHHAHPGAAAAAAAAAAAA 132
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/49 (42%), Positives = 22/49 (44%)
Query: 19 AGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKVAPLMAKA 67
AG SG G G GG G GG SS+ A A T AA A A A
Sbjct: 134 AGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAA 182
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 25 PSGLGDGDGGSGSGGGSSNRHAA 47
P G G G G SG GGG+ +++
Sbjct: 18 PGGGGGGGGSSGGGGGAGGGYSS 40
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 24 APSGLGD--GDGGS---GSGGGSSNRHAAPADKTRKQAAKKVAPLMAKA 67
A G GD G GG G GGGSS+ AA + AA A A A
Sbjct: 133 AAGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAA 181
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 4 AADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRK-QAAKKVAP 62
+A G G E P A ++ G G G G+GG S A TR+ +
Sbjct: 67 SAGGGPGAEEAIPAAAAAAVVAEGAEAGAAGPGAGGAGSGEGARSKPYTRRPKPPYSYIA 126
Query: 63 LMAKAIRDYKG 73
L+A AIRD G
Sbjct: 127 LIAMAIRDSAG 137
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 14 PAPKPAG-SSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV 60
P P PA S+ AP G G GG +GGG H A R+ K V
Sbjct: 78 PPPPPAPPSTSAPGRGGRGGGGGRTGGGGGGGHLARTTAARRAVNKVV 125
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 14 PAPKPAG-SSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQAAKKV 60
P P PA S+ AP G G GG +GGG H A R+ K V
Sbjct: 78 PPPPPAPPSTSAPGRGGRGGGGGRTGGGGGGGHLARTTAARRAVNKVV 125
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 7 PGNGEME-------PAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQ 55
P GE++ PAP P G + +G G G G G GS+ + PAD +Q
Sbjct: 71 PAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGST---SGPADSVMRQ 123
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 7 PGNGEME-------PAPKPAGSSQAPSGLGDGDGGSGSGGGSSNRHAAPADKTRKQ 55
P GE++ PAP P G + +G G G G G GS+ + PAD +Q
Sbjct: 71 PAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGST---SGPADSVMRQ 123
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 32.7 bits (73), Expect = 0.064
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 20 GSSQAPSGLGDGDGGSGSGGGS-SNRHAAPADKTRKQA 56
G+ G G G GGSG GGG S+R AP + T +A
Sbjct: 229 GAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEA 266
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 32.7 bits (73), Expect = 0.064
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 20 GSSQAPSGLGDGDGGSGSGGGS-SNRHAAPADKTRKQA 56
G+ G G G GGSG GGG S+R AP + T +A
Sbjct: 213 GAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEA 250
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 3 GAADPGNGEMEPAPKPAGSSQAPSGLG-DGDGGSGSGGGSSNRHAAPADKTRKQAAKKVA 61
GAA G G + PA + G G GG+G GGGSS+ +P Q + +A
Sbjct: 54 GAAGGGVGGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVMA 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.126 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,898,203
Number of Sequences: 37866
Number of extensions: 231301
Number of successful extensions: 4262
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 2296
Number of HSP's gapped (non-prelim): 1497
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.