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Search of human proteins with 119874215
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119874215 vacuolar protein sorting 13B isoform 4 [Homo
sapiens]
(415 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119874215 vacuolar protein sorting 13B isoform 4 [Homo sapiens] 843 0.0
gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens] 815 0.0
gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens] 815 0.0
gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens] 815 0.0
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 84 2e-16
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 84 2e-16
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 74 2e-13
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 74 2e-13
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 74 2e-13
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 74 2e-13
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 72 1e-12
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 72 1e-12
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 65 1e-10
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 65 1e-10
gi|134152667 ICBP90 binding protein 1 [Homo sapiens] 55 9e-08
gi|55749659 UHRF1 (ICBP90) binding protein 1-like isoform b [Hom... 54 3e-07
gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom... 54 3e-07
gi|14211935 testes development-related NYD-SP18 [Homo sapiens] 33 0.62
gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 32 1.4
gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 32 1.4
gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens] 32 1.4
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 30 5.3
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 30 5.3
gi|31581524 cordon-bleu homolog [Homo sapiens] 29 6.9
gi|37595553 ring finger protein 111 [Homo sapiens] 29 9.0
gi|90819239 hypothetical protein LOC55010 [Homo sapiens] 29 9.0
>gi|119874215 vacuolar protein sorting 13B isoform 4 [Homo sapiens]
Length = 415
Score = 843 bits (2177), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG
Sbjct: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI
Sbjct: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
Query: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT
Sbjct: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
Query: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF
Sbjct: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
Query: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL
Sbjct: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
Query: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD
Sbjct: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
Query: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKVGLFSCCLYLYQL 415
DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKVGLFSCCLYLYQL
Sbjct: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKVGLFSCCLYLYQL 415
>gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens]
Length = 4022
Score = 815 bits (2105), Expect = 0.0
Identities = 402/403 (99%), Positives = 403/403 (100%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG
Sbjct: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI
Sbjct: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
Query: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT
Sbjct: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
Query: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF
Sbjct: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
Query: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL
Sbjct: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
Query: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD
Sbjct: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
Query: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKV 403
DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFK+
Sbjct: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKL 403
>gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens]
Length = 3997
Score = 815 bits (2105), Expect = 0.0
Identities = 402/403 (99%), Positives = 403/403 (100%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG
Sbjct: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI
Sbjct: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
Query: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT
Sbjct: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
Query: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF
Sbjct: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
Query: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL
Sbjct: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
Query: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD
Sbjct: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
Query: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKV 403
DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFK+
Sbjct: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKL 403
>gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens]
Length = 863
Score = 815 bits (2105), Expect = 0.0
Identities = 402/403 (99%), Positives = 403/403 (100%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG
Sbjct: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI
Sbjct: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
Query: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT
Sbjct: 121 KPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYT 180
Query: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF
Sbjct: 181 VGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHF 240
Query: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL
Sbjct: 241 TYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDL 300
Query: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD
Sbjct: 301 TCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYD 360
Query: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKV 403
DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFK+
Sbjct: 361 DGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKL 403
>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
sapiens]
Length = 3710
Score = 84.0 bits (206), Expect = 2e-16
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 17/213 (7%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+LES V +L ++ Y++NL S L+L +WGG+V L L++K + L EL +PF +G
Sbjct: 2 VLESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENAL-SELDVPFKVKAG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
I +L + +PW L E VV T+ + L + G +++ + + + S I
Sbjct: 61 QIDKLTLKIPWKNLYGEAVVATLEGL--YLLVVPGASIKYDAVKEEKSLQDVKQKELSRI 118
Query: 121 KPRRMQQAAPTDPD---LPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIV-----LSVN 172
+ +Q+AA D +V+ L +V+ NV + I ++ +KY EDD+ LS
Sbjct: 119 E-EALQKAAEKDKPKEAKKDTFVEKLATQVIKNVQVKITDIHIKY-EDDVTDPKRPLSFG 176
Query: 173 ITSAE--CYTVGELWDRAFMDISATDLVLRKVI 203
+T E T E W ++ D ++ K+I
Sbjct: 177 VTLGELSLLTANEHWTPCI--LNEADKIIYKLI 207
>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
sapiens]
Length = 3585
Score = 84.0 bits (206), Expect = 2e-16
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 17/213 (7%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+LES V +L ++ Y++NL S L+L +WGG+V L L++K + L EL +PF +G
Sbjct: 2 VLESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENAL-SELDVPFKVKAG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSI 120
I +L + +PW L E VV T+ + L + G +++ + + + S I
Sbjct: 61 QIDKLTLKIPWKNLYGEAVVATLEGL--YLLVVPGASIKYDAVKEEKSLQDVKQKELSRI 118
Query: 121 KPRRMQQAAPTDPD---LPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIV-----LSVN 172
+ +Q+AA D +V+ L +V+ NV + I ++ +KY EDD+ LS
Sbjct: 119 E-EALQKAAEKDKPKEAKKDTFVEKLATQVIKNVQVKITDIHIKY-EDDVTDPKRPLSFG 176
Query: 173 ITSAE--CYTVGELWDRAFMDISATDLVLRKVI 203
+T E T E W ++ D ++ K+I
Sbjct: 177 VTLGELSLLTANEHWTPCI--LNEADKIIYKLI 207
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 74.3 bits (181), Expect = 2e-13
Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+ ES V +L ++ Y+ +L S L L +W G V L L++K + L Q L +PF G
Sbjct: 2 VFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQ-LDVPFKVKVG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECIL----KLK-DGIQDDHESCGSNSTNRSTAES 115
HI L++ +PW L ++PV + + ++ ++K D ++++ + + E
Sbjct: 61 HIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEE 120
Query: 116 TKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIV------- 168
K + + +Q P D + + L+ +++ N+ + I+++ ++Y EDDI
Sbjct: 121 AKQKVVDQ--EQHLPEKQDT---FAEKLVTQIIKNLQVKISSIHIRY-EDDITNRDKPLS 174
Query: 169 LSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSD 207
+++ + T + W D T+ ++RK+I +
Sbjct: 175 FGISLQNLSMQTTDQYWVPCLHD--ETEKLVRKLIRLDN 211
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 74.3 bits (181), Expect = 2e-13
Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+ ES V +L ++ Y+ +L S L L +W G V L L++K + L Q L +PF G
Sbjct: 2 VFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQ-LDVPFKVKVG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECIL----KLK-DGIQDDHESCGSNSTNRSTAES 115
HI L++ +PW L ++PV + + ++ ++K D ++++ + + E
Sbjct: 61 HIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEE 120
Query: 116 TKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIV------- 168
K + + +Q P D + + L+ +++ N+ + I+++ ++Y EDDI
Sbjct: 121 AKQKVVDQ--EQHLPEKQDT---FAEKLVTQIIKNLQVKISSIHIRY-EDDITNRDKPLS 174
Query: 169 LSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSD 207
+++ + T + W D T+ ++RK+I +
Sbjct: 175 FGISLQNLSMQTTDQYWVPCLHD--ETEKLVRKLIRLDN 211
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 74.3 bits (181), Expect = 2e-13
Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+ ES V +L ++ Y+ +L S L L +W G V L L++K + L Q L +PF G
Sbjct: 2 VFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQ-LDVPFKVKVG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECIL----KLK-DGIQDDHESCGSNSTNRSTAES 115
HI L++ +PW L ++PV + + ++ ++K D ++++ + + E
Sbjct: 61 HIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEE 120
Query: 116 TKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIV------- 168
K + + +Q P D + + L+ +++ N+ + I+++ ++Y EDDI
Sbjct: 121 AKQKVVDQ--EQHLPEKQDT---FAEKLVTQIIKNLQVKISSIHIRY-EDDITNRDKPLS 174
Query: 169 LSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSD 207
+++ + T + W D T+ ++RK+I +
Sbjct: 175 FGISLQNLSMQTTDQYWVPCLHD--ETEKLVRKLIRLDN 211
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 74.3 bits (181), Expect = 2e-13
Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+ ES V +L ++ Y+ +L S L L +W G V L L++K + L Q L +PF G
Sbjct: 2 VFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQ-LDVPFKVKVG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECIL----KLK-DGIQDDHESCGSNSTNRSTAES 115
HI L++ +PW L ++PV + + ++ ++K D ++++ + + E
Sbjct: 61 HIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEE 120
Query: 116 TKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIV------- 168
K + + +Q P D + + L+ +++ N+ + I+++ ++Y EDDI
Sbjct: 121 AKQKVVDQ--EQHLPEKQDT---FAEKLVTQIIKNLQVKISSIHIRY-EDDITNRDKPLS 174
Query: 169 LSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSD 207
+++ + T + W D T+ ++RK+I +
Sbjct: 175 FGISLQNLSMQTTDQYWVPCLHD--ETEKLVRKLIRLDN 211
>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
sapiens]
Length = 3628
Score = 71.6 bits (174), Expect = 1e-12
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 54/253 (21%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+LES V +L ++ Y++NL S L+L +WGG+V L L++K + L EL +PF +G
Sbjct: 2 VLESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENAL-SELDVPFKVKAG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECI-----------LKLKDGIQDDHE---SCGSN 106
I +L + +PW L E VV T+ + + +K + +QD + S
Sbjct: 61 QIDKLTLKIPWKNLYGEAVVATLEGLYLLVVPGASIKYDAVKEEKSLQDVKQKELSRIEE 120
Query: 107 STNRSTAESTKS-------------SIKPRRMQ-----------QAAPTDPDLP-----P 137
+ ++ + T S IKP R + + D P
Sbjct: 121 ALQKAAEKGTHSGEFIYGLENFVYKDIKPGRKRKKHKKHFKKPFKGLDRSKDKPKEAKKD 180
Query: 138 GYVQSLIRRVVNNVNIVINNLILKYVEDDIV-----LSVNITSAE--CYTVGELWDRAFM 190
+V+ L +V+ NV + I ++ +KY EDD+ LS +T E T E W
Sbjct: 181 TFVEKLATQVIKNVQVKITDIHIKY-EDDVTDPKRPLSFGVTLGELSLLTANEHWTPCI- 238
Query: 191 DISATDLVLRKVI 203
++ D ++ K+I
Sbjct: 239 -LNEADKIIYKLI 250
>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
sapiens]
Length = 3753
Score = 71.6 bits (174), Expect = 1e-12
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 54/253 (21%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
+LES V +L ++ Y++NL S L+L +WGG+V L L++K + L EL +PF +G
Sbjct: 2 VLESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENAL-SELDVPFKVKAG 60
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECI-----------LKLKDGIQDDHE---SCGSN 106
I +L + +PW L E VV T+ + + +K + +QD + S
Sbjct: 61 QIDKLTLKIPWKNLYGEAVVATLEGLYLLVVPGASIKYDAVKEEKSLQDVKQKELSRIEE 120
Query: 107 STNRSTAESTKS-------------SIKPRRMQ-----------QAAPTDPDLP-----P 137
+ ++ + T S IKP R + + D P
Sbjct: 121 ALQKAAEKGTHSGEFIYGLENFVYKDIKPGRKRKKHKKHFKKPFKGLDRSKDKPKEAKKD 180
Query: 138 GYVQSLIRRVVNNVNIVINNLILKYVEDDIV-----LSVNITSAE--CYTVGELWDRAFM 190
+V+ L +V+ NV + I ++ +KY EDD+ LS +T E T E W
Sbjct: 181 TFVEKLATQVIKNVQVKITDIHIKY-EDDVTDPKRPLSFGVTLGELSLLTANEHWTPCI- 238
Query: 191 DISATDLVLRKVI 203
++ D ++ K+I
Sbjct: 239 -LNEADKIIYKLI 250
>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
Length = 4363
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
MLE V +L +Y+ +Y+ NL L ++L G V L L LK D L +EL+LPF +G
Sbjct: 1 MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDAL-KELELPFEVKAG 59
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECI---LKLKDGIQDDHESCGSNSTNRSTAESTK 117
I ++ + +P+ + +P VI+I+++ I K++D D+ E ++ ++ +
Sbjct: 60 FIGKVTLQIPFYRPHVDPWVISISSLHLIGAPEKIQD-FNDEKEKLLERERKKALLQALE 118
Query: 118 SSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDI 167
K R Q+ S++ R+V N+ + I ++ L++ ED +
Sbjct: 119 EKWKNDRQQKG----ESYWYSVTASVVTRIVENIELKIQDVHLRF-EDGV 163
>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
Length = 4388
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSG 60
MLE V +L +Y+ +Y+ NL L ++L G V L L LK D L +EL+LPF +G
Sbjct: 1 MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDAL-KELELPFEVKAG 59
Query: 61 HIHELRIHVPWTKLGSEPVVITINTMECI---LKLKDGIQDDHESCGSNSTNRSTAESTK 117
I ++ + +P+ + +P VI+I+++ I K++D D+ E ++ ++ +
Sbjct: 60 FIGKVTLQIPFYRPHVDPWVISISSLHLIGAPEKIQD-FNDEKEKLLERERKKALLQALE 118
Query: 118 SSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDI 167
K R Q+ S++ R+V N+ + I ++ L++ ED +
Sbjct: 119 EKWKNDRQQKG----ESYWYSVTASVVTRIVENIELKIQDVHLRF-EDGV 163
>gi|134152667 ICBP90 binding protein 1 [Homo sapiens]
Length = 1440
Score = 55.5 bits (132), Expect = 9e-08
Identities = 58/275 (21%), Positives = 117/275 (42%), Gaps = 36/275 (13%)
Query: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLP--FTFLSGHIHELRI 67
++ +++R+ KNL P + LS G+ L+ LEL +VL+ L+LP + + I
Sbjct: 9 ILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITRVYCNRASI 68
Query: 68 HVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQ 127
+ WTKL + P+ + ++ +E +K +D G + ++ +S
Sbjct: 69 RIQWTKLKTHPICLCLDKVEVEMKT---CEDPRPPNGQSPIALASGQSE----------- 114
Query: 128 AAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDR 187
+VV + I++N++ +K S + + Y+V W +
Sbjct: 115 -------------YGFAEKVVEGMFIIVNSITIKIHSKAFHASFELWQLQGYSVNPNWQQ 161
Query: 188 AFMDIS-ATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPL---LYKCSFRTRLHFTYE 243
+ + ++ TD +V+ F + T + A QDP+ L + + R+ +
Sbjct: 162 SDLRLTRITDPCRGEVLTFKEITWQTLRIEADATDNGDQDPVTTPLRLITNQGRIQIALK 221
Query: 244 NLNSKMPSVI--KIHTLVESLKLSITDQQLPMFIR 276
+K +VI K+ L++ L +TD QL ++
Sbjct: 222 R-RTKDCNVISSKLMFLLDDLLWVLTDSQLKAMMK 255
>gi|55749659 UHRF1 (ICBP90) binding protein 1-like isoform b [Homo
sapiens]
Length = 522
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHI--HELRI 67
++ +++R+ KNL P + LS G+ L LEL +VL+ L LP + ++ I
Sbjct: 9 ILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASI 68
Query: 68 HVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQ 127
+PWTKL + P+ ++++ + I+++ ST E +S P +
Sbjct: 69 RIPWTKLKTHPICLSLD--KVIMEM------------------STCEEPRSPNGPSPIAT 108
Query: 128 AAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWD 186
A+ +VV +++ +N+++++ S ++ Y+V W+
Sbjct: 109 ASGQSE-------YGFAEKVVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWE 160
>gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Homo
sapiens]
Length = 1464
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHI--HELRI 67
++ +++R+ KNL P + LS G+ L LEL +VL+ L LP + ++ I
Sbjct: 9 ILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASI 68
Query: 68 HVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQ 127
+PWTKL + P+ ++++ + I+++ ST E +S P +
Sbjct: 69 RIPWTKLKTHPICLSLD--KVIMEM------------------STCEEPRSPNGPSPIAT 108
Query: 128 AAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWD 186
A+ +VV +++ +N+++++ S ++ Y+V W+
Sbjct: 109 ASGQSE-------YGFAEKVVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWE 160
>gi|14211935 testes development-related NYD-SP18 [Homo sapiens]
Length = 344
Score = 32.7 bits (73), Expect = 0.62
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 196 DLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKI 255
DL + ++F +N+SGK +D + C R R FTY + PS ++
Sbjct: 262 DLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQP 321
Query: 256 HTLVESLKLSITDQQLP 272
+L+ +L S Q P
Sbjct: 322 LSLLSTLAASTGPQLAP 338
>gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1363
Score = 31.6 bits (70), Expect = 1.4
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVV---------LSKLELKLDVLEQEL---KLPFTF 57
L + +N Y + L+ DL+L LW D V +S+L K ++L +++ ++ F
Sbjct: 534 LATAINEYNEILERKDLELVLWRADDVSRHETMGSNISQLTDKNELLTEQVHKARVKFNT 593
Query: 58 LSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTK 117
L G + E R + L E V + + + +K + + E+ S S + S++
Sbjct: 594 LKGKLRETRDALREKTLALESVQLDLKQAQHRIKEMKQMHPNGEAKESQSIGKQ--NSSE 651
Query: 118 SSIKPRRMQ 126
I+ R ++
Sbjct: 652 ERIRQRELE 660
>gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1366
Score = 31.6 bits (70), Expect = 1.4
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVV---------LSKLELKLDVLEQEL---KLPFTF 57
L + +N Y + L+ DL+L LW D V +S+L K ++L +++ ++ F
Sbjct: 563 LATAINEYNEILERKDLELVLWRADDVSRHETMGSNISQLTDKNELLTEQVHKARVKFNT 622
Query: 58 LSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTK 117
L G + E R + L E V + + + +K + + E+ S S + S++
Sbjct: 623 LKGKLRETRDALREKTLALESVQLDLKQAQHRIKEMKQMHPNGEAKESQSIGKQ--NSSE 680
Query: 118 SSIKPRRMQ 126
I+ R ++
Sbjct: 681 ERIRQRELE 689
>gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
Length = 1139
Score = 31.6 bits (70), Expect = 1.4
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVV---------LSKLELKLDVLEQEL---KLPFTF 57
L + +N Y + L+ DL+L LW D V +S+L K ++L +++ ++ F
Sbjct: 563 LATAINEYNEILERKDLELVLWRADDVSRHETMGSNISQLTDKNELLTEQVHKARVKFNT 622
Query: 58 LSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTK 117
L G + E R + L E V + + + +K + + E+ S S + S++
Sbjct: 623 LKGKLRETRDALREKTLALESVQLDLKQAQHRIKEMKQMHPNGEAKESQSIGKQ--NSSE 680
Query: 118 SSIKPRRMQ 126
I+ R ++
Sbjct: 681 ERIRQRELE 689
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 29.6 bits (65), Expect = 5.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 102 SCGSNSTNRSTAESTKSSIKPRRMQQAAPTDPDLPPGY 139
S S+S++ S++ S+ SS QA DP LPP +
Sbjct: 93 SSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAF 130
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 29.6 bits (65), Expect = 5.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 102 SCGSNSTNRSTAESTKSSIKPRRMQQAAPTDPDLPPGY 139
S S+S++ S++ S+ SS QA DP LPP +
Sbjct: 93 SSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAF 130
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 29.3 bits (64), Expect = 6.9
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 70 PWTKLGSEPVVITINTMECILKLKDGIQDD---HESCGSNSTNRSTAESTKSSIKPRRMQ 126
P KL ++ I+ C ++ +D +SCG + ++++ S+ +PRR
Sbjct: 957 PHRKLSTQDRPAAIHRSSCFSLVQSSQRDRVSVGQSCGFSGKQSTSSQEASSASEPRR-- 1014
Query: 127 QAAPTDPDLPPGY---VQSLIRRVVN 149
AP D PP + Q+ R +VN
Sbjct: 1015 --APDGTDPPPPHTSDTQACSRELVN 1038
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 28.9 bits (63), Expect = 9.0
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 256 HTLVESLKLSITDQQLPMFIRIMQLGI--ALYYGEI-GNFKEGEIEDLTCHNKDMLGNIT 312
H + +L L + D IR + G+ + G GNF+E H ++ LGN+
Sbjct: 841 HLQLGALPLMVPDMAGYPHIRYISSGLDGTSFRGPFRGNFEE------LIHLEERLGNVN 894
Query: 313 GSEDETRIDM-QYPAQHKGQELYSQQDEEQ 341
+ I+ YP ++K ++L+ +QD E+
Sbjct: 895 RGASQGTIERCTYPHKYKKRKLHCKQDGEE 924
>gi|90819239 hypothetical protein LOC55010 [Homo sapiens]
Length = 498
Score = 28.9 bits (63), Expect = 9.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 149 NNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRK 201
NNVN+ L + Y+E+D+ VN S T+G + +D S + V RK
Sbjct: 366 NNVNLASKPLCVLYMENDLSEGVN-PSVGRSTIGTSFGNVHLDRSKNEKVSRK 417
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,273,693
Number of Sequences: 37866
Number of extensions: 664245
Number of successful extensions: 1769
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 41
length of query: 415
length of database: 18,247,518
effective HSP length: 105
effective length of query: 310
effective length of database: 14,271,588
effective search space: 4424192280
effective search space used: 4424192280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.