BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] (236 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] 482 e-136 gi|239751290 PREDICTED: hypothetical protein [Homo sapiens] 405 e-113 gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens] 60 2e-09 gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] 60 2e-09 gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens] 60 2e-09 gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens] 60 2e-09 gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] 46 3e-05 gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso... 38 0.007 gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 37 0.019 gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo ... 36 0.033 gi|239755282 PREDICTED: similar to Tripartite motif-containing p... 35 0.056 gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo ... 35 0.056 gi|194578909 eukaryotic translation initiation factor 4E isoform... 34 0.13 gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 33 0.21 gi|188536004 zinc finger protein 469 [Homo sapiens] 30 1.8 gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 30 2.4 gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 29 3.1 gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 28 6.9 gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 28 6.9 gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 28 6.9 gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 28 6.9 gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens] 28 6.9 gi|223005862 echinoderm microtubule associated protein like 6 [H... 28 9.0 gi|223633939 solute carrier family 39 (zinc transporter), member... 28 9.0 gi|226437602 NK1 homeobox 2 [Homo sapiens] 28 9.0 gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 9.0 gi|239751849 PREDICTED: hypothetical protein [Homo sapiens] 28 9.0 gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 9.0 gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ... 28 9.0 gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro... 28 9.0 >gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] Length = 236 Score = 482 bits (1241), Expect = e-136 Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQ 60 MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQ Sbjct: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQ 60 Query: 61 DYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE 120 DYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE Sbjct: 61 DYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE 120 Query: 121 TALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRALQKCQSEGSGHRLGPFGMMGK 180 TALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRALQKCQSEGSGHRLGPFGMMGK Sbjct: 121 TALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRALQKCQSEGSGHRLGPFGMMGK 180 Query: 181 FAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGLSTLTRAGPRRHTRAGT 236 FAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGLSTLTRAGPRRHTRAGT Sbjct: 181 FAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGLSTLTRAGPRRHTRAGT 236 >gi|239751290 PREDICTED: hypothetical protein [Homo sapiens] Length = 196 Score = 405 bits (1040), Expect = e-113 Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 41 MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 100 MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS Sbjct: 1 MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 60 Query: 101 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 160 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL Sbjct: 61 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 120 Query: 161 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 220 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL Sbjct: 121 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 180 Query: 221 STLTRAGPRRHTRAGT 236 STLTRAGPRRHTRAGT Sbjct: 181 STLTRAGPRRHTRAGT 196 >gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens] Length = 236 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/32 (84%), Positives = 31/32 (96%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32 MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32 >gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] Length = 284 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/32 (84%), Positives = 31/32 (96%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32 MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32 >gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens] Length = 251 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/32 (84%), Positives = 31/32 (96%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32 MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32 >gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens] Length = 166 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/32 (84%), Positives = 31/32 (96%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32 MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32 >gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] Length = 175 Score = 45.8 bits (107), Expect = 3e-05 Identities = 21/30 (70%), Positives = 24/30 (80%) Query: 3 DLLPFAVPTKSDKTLLVWELSSGPTADALH 32 +++ P SDKTLLVWELSSGPTADALH Sbjct: 74 NMMTHCSPGWSDKTLLVWELSSGPTADALH 103 >gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 isoform a [Homo sapiens] Length = 1090 Score = 38.1 bits (87), Expect = 0.007 Identities = 17/28 (60%), Positives = 20/28 (71%) Query: 31 LHRQGLAVLLMLVLNSWPQAILPSWPPR 58 + RQG AVL LV NSW QAI P +PP+ Sbjct: 229 IKRQGFAVLPKLVSNSWAQAIYPPYPPK 256 >gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo sapiens] Length = 1570 Score = 36.6 bits (83), Expect = 0.019 Identities = 14/26 (53%), Positives = 18/26 (69%) Query: 33 RQGLAVLLMLVLNSWPQAILPSWPPR 58 RQ L VL L+ + W QA+LP WPP+ Sbjct: 458 RQSLTVLTRLISSFWAQAVLPPWPPK 483 >gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo sapiens] Length = 372 Score = 35.8 bits (81), Expect = 0.033 Identities = 15/32 (46%), Positives = 23/32 (71%) Query: 33 RQGLAVLLMLVLNSWPQAILPSWPPREQDYRL 64 R+GL +L LV NSW QA+LP PP+ ++++ Sbjct: 341 RRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQV 372 >gi|239755282 PREDICTED: similar to Tripartite motif-containing protein 43-like protein 1 [Homo sapiens] Length = 185 Score = 35.0 bits (79), Expect = 0.056 Identities = 18/31 (58%), Positives = 22/31 (70%) Query: 33 RQGLAVLLMLVLNSWPQAILPSWPPREQDYR 63 RQGL +L LVL+S QAIL PP+E DY+ Sbjct: 9 RQGLIMLPRLVLDSLDQAILLPQPPKELDYK 39 >gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo sapiens] Length = 185 Score = 35.0 bits (79), Expect = 0.056 Identities = 18/31 (58%), Positives = 22/31 (70%) Query: 33 RQGLAVLLMLVLNSWPQAILPSWPPREQDYR 63 RQGL +L LVL+S QAIL PP+E DY+ Sbjct: 9 RQGLIMLPRLVLDSLDQAILLPQPPKELDYK 39 >gi|194578909 eukaryotic translation initiation factor 4E isoform 2 [Homo sapiens] Length = 248 Score = 33.9 bits (76), Expect = 0.13 Identities = 17/35 (48%), Positives = 21/35 (60%) Query: 33 RQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLL 67 R LA+L LV N WPQ ILP PP+ + +L L Sbjct: 134 RWDLAMLPRLVSNFWPQVILPLQPPKVLELQLLCL 168 >gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] Length = 226 Score = 33.1 bits (74), Expect = 0.21 Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 38 VLLMLVLNSWPQAILPSWPPR 58 +LL LV NSWPQ ILP PP+ Sbjct: 1 MLLRLVSNSWPQVILPPRPPK 21 >gi|188536004 zinc finger protein 469 [Homo sapiens] Length = 3925 Score = 30.0 bits (66), Expect = 1.8 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 11/79 (13%) Query: 143 GEEQRPGWTG----DHARS-RALQKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRG 197 G+ + PG G DH + LQK + S H + G G F K GS+ K G Sbjct: 3594 GKRRAPGARGRCAPDHFQEDHLLQKEKEVSSSHMVSEGGPRGTFHK------GSATKPAG 3647 Query: 198 FQAAEEPEDPASAPDTQLR 216 Q++ + AS P L+ Sbjct: 3648 CQSSSKDRSAASTPSKALK 3666 >gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] Length = 476 Score = 29.6 bits (65), Expect = 2.4 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 8/95 (8%) Query: 122 ALVFPALEINVVPLNHKDC---PWGEEQR-PGWTGDHARSRALQKCQSEGSGHRLGPFGM 177 A + P +N PL + C P G E R P W G H + Q ++ G R G Sbjct: 36 AALQPHPRVNFCPLPSEQCYQAPGGPEDRGPAWVGSHGVLQHTQGLPADRGGLRPGSLDA 95 Query: 178 MGKFAKVRRQEL----GSSLKQRGFQAAEEPEDPA 208 EL G + ++ QA E P PA Sbjct: 96 EIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPA 130 >gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] Length = 1745 Score = 29.3 bits (64), Expect = 3.1 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Query: 87 SHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQ 146 +H H+ + +Q +D+ V GET L +P + +V L W +E+ Sbjct: 1550 NHPHLPDGEYWIDPNQGCARDSFRVFCNFTAGGETCL-YPDKKFEIVKL----ASWSKEK 1604 Query: 147 RPGWTGDHARSRALQKCQSEGS 168 GW R + ++GS Sbjct: 1605 PGGWYSTFRRGKKFSYVDADGS 1626 >gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo sapiens] Length = 3710 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44 + +LLP+++ + T EL+ G TAD LH + ++ LVL Sbjct: 2629 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2672 >gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo sapiens] Length = 3585 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44 + +LLP+++ + T EL+ G TAD LH + ++ LVL Sbjct: 2629 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2672 >gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo sapiens] Length = 3628 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44 + +LLP+++ + T EL+ G TAD LH + ++ LVL Sbjct: 2672 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2715 >gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo sapiens] Length = 3753 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44 + +LLP+++ + T EL+ G TAD LH + ++ LVL Sbjct: 2672 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2715 >gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens] Length = 1009 Score = 28.1 bits (61), Expect = 6.9 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 4 LLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWP 56 LLP VP T L+ LS GP A L LL + +W + LPS P Sbjct: 752 LLPGVVP--QGPTELLQPLSPGPGAAGTSSDALLALLDPLSTAWSGSTLPSRP 802 >gi|223005862 echinoderm microtubule associated protein like 6 [Homo sapiens] Length = 1958 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 4 LLPFAVPTKSDKTLLVWELSS 24 LLP DKTL +WELS+ Sbjct: 1009 LLPICATVSDDKTLRIWELSA 1029 >gi|223633939 solute carrier family 39 (zinc transporter), member 12 isoform 1 [Homo sapiens] Length = 691 Score = 27.7 bits (60), Expect = 9.0 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 65 FLLEVVQEVEESTSDEQ----IAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE 120 FL+E + S +D+Q + G HSH A SE S +GK + + ++S + + Sbjct: 459 FLIEKCFILLVSPNDKQGLSLVNGHVGHSHHLALNSELSDQAGRGKSASTIQLKSPEDSQ 518 Query: 121 TA 122 A Sbjct: 519 AA 520 >gi|226437602 NK1 homeobox 2 [Homo sapiens] Length = 310 Score = 27.7 bits (60), Expect = 9.0 Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 17 LLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEES 76 +L W+ A + H+ +VL +L + +A LP+ P ++ R L EV + S Sbjct: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60 Query: 77 TSD 79 + D Sbjct: 61 SRD 63 >gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 27.7 bits (60), Expect = 9.0 Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 17 LLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEES 76 +L W+ A + H+ +VL +L + +A LP+ P ++ R L EV + S Sbjct: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60 Query: 77 TSD 79 + D Sbjct: 61 SRD 63 >gi|239751849 PREDICTED: hypothetical protein [Homo sapiens] Length = 491 Score = 27.7 bits (60), Expect = 9.0 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 12/50 (24%) Query: 139 DCPWGEEQRPGWTGDHA--RSRALQKCQSE----------GSGHRLGPFG 176 + PWG++ PG +G H R+RA+ + G RLGP G Sbjct: 276 NAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325 >gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 27.7 bits (60), Expect = 9.0 Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 17 LLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEES 76 +L W+ A + H+ +VL +L + +A LP+ P ++ R L EV + S Sbjct: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60 Query: 77 TSD 79 + D Sbjct: 61 SRD 63 >gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like 3-like [Homo sapiens] Length = 208 Score = 27.7 bits (60), Expect = 9.0 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 121 TALVF--PALEINVVPLNHKDCPWGEE--QRPGWTGDHARSRALQKCQSEGSGHRLGPFG 176 T+ +F P I P N G+E ++P + R +ALQ C S+G G P Sbjct: 53 TSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGS--SPLH 110 Query: 177 MMGKFAKVRRQELGSSLKQRGFQAAEEPEDP 207 + + + G SL + G + P +P Sbjct: 111 LESVLSILAPGTAGESLDRAGAERVRSPLEP 141 >gi|113428063 PREDICTED: similar to methyl-CpG binding domain protein 3-like 2 [Homo sapiens] Length = 204 Score = 27.7 bits (60), Expect = 9.0 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 121 TALVF--PALEINVVPLNHKDCPWGEE--QRPGWTGDHARSRALQKCQSEGSGHRLGPFG 176 T+ +F P I P N G+E ++P + R +ALQ C S+G G P Sbjct: 53 TSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGS--SPLH 110 Query: 177 MMGKFAKVRRQELGSSLKQRGFQAAEEPEDP 207 + + + G SL + G + P +P Sbjct: 111 LESVLSILAPGTAGESLDRAGAERVRSPLEP 141 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.130 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,793,531 Number of Sequences: 37866 Number of extensions: 435810 Number of successful extensions: 1370 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1347 Number of HSP's gapped (non-prelim): 35 length of query: 236 length of database: 18,247,518 effective HSP length: 99 effective length of query: 137 effective length of database: 14,498,784 effective search space: 1986333408 effective search space used: 1986333408 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.