Guide to the Human Genome
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Search of human proteins with 239756812

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
         (236 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]       482   e-136
gi|239751290 PREDICTED: hypothetical protein [Homo sapiens]           405   e-113
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                     60   2e-09
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                     60   2e-09
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                    60   2e-09
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                    60   2e-09
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]           46   3e-05
gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso...    38   0.007
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H...    37   0.019
gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo ...    36   0.033
gi|239755282 PREDICTED: similar to Tripartite motif-containing p...    35   0.056
gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo ...    35   0.056
gi|194578909 eukaryotic translation initiation factor 4E isoform...    34   0.13 
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]          33   0.21 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    30   1.8  
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]      30   2.4  
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    29   3.1  
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom...    28   6.9  
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom...    28   6.9  
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom...    28   6.9  
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom...    28   6.9  
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]    28   6.9  
gi|223005862 echinoderm microtubule associated protein like 6 [H...    28   9.0  
gi|223633939 solute carrier family 39 (zinc transporter), member...    28   9.0  
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             28   9.0  
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  28   9.0  
gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]            28   9.0  
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  28   9.0  
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ...    28   9.0  
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro...    28   9.0  

>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
          Length = 236

 Score =  482 bits (1241), Expect = e-136
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQ 60
           MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQ
Sbjct: 1   MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQ 60

Query: 61  DYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE 120
           DYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE
Sbjct: 61  DYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE 120

Query: 121 TALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRALQKCQSEGSGHRLGPFGMMGK 180
           TALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRALQKCQSEGSGHRLGPFGMMGK
Sbjct: 121 TALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRALQKCQSEGSGHRLGPFGMMGK 180

Query: 181 FAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGLSTLTRAGPRRHTRAGT 236
           FAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGLSTLTRAGPRRHTRAGT
Sbjct: 181 FAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGLSTLTRAGPRRHTRAGT 236


>gi|239751290 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score =  405 bits (1040), Expect = e-113
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 41  MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 100
           MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS
Sbjct: 1   MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 60

Query: 101 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 160
           HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL
Sbjct: 61  HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 120

Query: 161 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 220
           QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL
Sbjct: 121 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 180

Query: 221 STLTRAGPRRHTRAGT 236
           STLTRAGPRRHTRAGT
Sbjct: 181 STLTRAGPRRHTRAGT 196


>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1  MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32
          MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1  MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32


>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1  MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32
          MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1  MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32


>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1  MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32
          MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1  MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 1  MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32
          MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1  MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32


>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/30 (70%), Positives = 24/30 (80%)

Query: 3   DLLPFAVPTKSDKTLLVWELSSGPTADALH 32
           +++    P  SDKTLLVWELSSGPTADALH
Sbjct: 74  NMMTHCSPGWSDKTLLVWELSSGPTADALH 103


>gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10
           isoform a [Homo sapiens]
          Length = 1090

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 31  LHRQGLAVLLMLVLNSWPQAILPSWPPR 58
           + RQG AVL  LV NSW QAI P +PP+
Sbjct: 229 IKRQGFAVLPKLVSNSWAQAIYPPYPPK 256


>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
           sapiens]
          Length = 1570

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 33  RQGLAVLLMLVLNSWPQAILPSWPPR 58
           RQ L VL  L+ + W QA+LP WPP+
Sbjct: 458 RQSLTVLTRLISSFWAQAVLPPWPPK 483


>gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo
           sapiens]
          Length = 372

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 33  RQGLAVLLMLVLNSWPQAILPSWPPREQDYRL 64
           R+GL +L  LV NSW QA+LP  PP+  ++++
Sbjct: 341 RRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQV 372


>gi|239755282 PREDICTED: similar to Tripartite motif-containing
          protein 43-like protein 1 [Homo sapiens]
          Length = 185

 Score = 35.0 bits (79), Expect = 0.056
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 33 RQGLAVLLMLVLNSWPQAILPSWPPREQDYR 63
          RQGL +L  LVL+S  QAIL   PP+E DY+
Sbjct: 9  RQGLIMLPRLVLDSLDQAILLPQPPKELDYK 39


>gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo
          sapiens]
          Length = 185

 Score = 35.0 bits (79), Expect = 0.056
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 33 RQGLAVLLMLVLNSWPQAILPSWPPREQDYR 63
          RQGL +L  LVL+S  QAIL   PP+E DY+
Sbjct: 9  RQGLIMLPRLVLDSLDQAILLPQPPKELDYK 39


>gi|194578909 eukaryotic translation initiation factor 4E isoform 2
           [Homo sapiens]
          Length = 248

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 33  RQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLL 67
           R  LA+L  LV N WPQ ILP  PP+  + +L  L
Sbjct: 134 RWDLAMLPRLVSNFWPQVILPLQPPKVLELQLLCL 168


>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
          Length = 226

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 38 VLLMLVLNSWPQAILPSWPPR 58
          +LL LV NSWPQ ILP  PP+
Sbjct: 1  MLLRLVSNSWPQVILPPRPPK 21


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 143  GEEQRPGWTG----DHARS-RALQKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRG 197
            G+ + PG  G    DH +    LQK +   S H +   G  G F K      GS+ K  G
Sbjct: 3594 GKRRAPGARGRCAPDHFQEDHLLQKEKEVSSSHMVSEGGPRGTFHK------GSATKPAG 3647

Query: 198  FQAAEEPEDPASAPDTQLR 216
             Q++ +    AS P   L+
Sbjct: 3648 CQSSSKDRSAASTPSKALK 3666


>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
          Length = 476

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 122 ALVFPALEINVVPLNHKDC---PWGEEQR-PGWTGDHARSRALQKCQSEGSGHRLGPFGM 177
           A + P   +N  PL  + C   P G E R P W G H   +  Q   ++  G R G    
Sbjct: 36  AALQPHPRVNFCPLPSEQCYQAPGGPEDRGPAWVGSHGVLQHTQGLPADRGGLRPGSLDA 95

Query: 178 MGKFAKVRRQEL----GSSLKQRGFQAAEEPEDPA 208
                     EL    G + ++   QA E P  PA
Sbjct: 96  EIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPA 130


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 87   SHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQ 146
            +H H+   +     +Q   +D+  V       GET L +P  +  +V L      W +E+
Sbjct: 1550 NHPHLPDGEYWIDPNQGCARDSFRVFCNFTAGGETCL-YPDKKFEIVKL----ASWSKEK 1604

Query: 147  RPGWTGDHARSRALQKCQSEGS 168
              GW     R +      ++GS
Sbjct: 1605 PGGWYSTFRRGKKFSYVDADGS 1626


>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
            sapiens]
          Length = 3710

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1    MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44
            + +LLP+++    + T    EL+ G TAD LH +    ++ LVL
Sbjct: 2629 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2672


>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
            sapiens]
          Length = 3585

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1    MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44
            + +LLP+++    + T    EL+ G TAD LH +    ++ LVL
Sbjct: 2629 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2672


>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
            sapiens]
          Length = 3628

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1    MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44
            + +LLP+++    + T    EL+ G TAD LH +    ++ LVL
Sbjct: 2672 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2715


>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
            sapiens]
          Length = 3753

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1    MADLLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVL 44
            + +LLP+++    + T    EL+ G TAD LH +    ++ LVL
Sbjct: 2672 LRNLLPYSLRYLLEGTAETHELAEGSTADVLHSRISGEIMELVL 2715


>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
          Length = 1009

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   LLPFAVPTKSDKTLLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWP 56
           LLP  VP     T L+  LS GP A       L  LL  +  +W  + LPS P
Sbjct: 752 LLPGVVP--QGPTELLQPLSPGPGAAGTSSDALLALLDPLSTAWSGSTLPSRP 802


>gi|223005862 echinoderm microtubule associated protein like 6 [Homo
            sapiens]
          Length = 1958

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 4    LLPFAVPTKSDKTLLVWELSS 24
            LLP       DKTL +WELS+
Sbjct: 1009 LLPICATVSDDKTLRIWELSA 1029


>gi|223633939 solute carrier family 39 (zinc transporter), member 12
           isoform 1 [Homo sapiens]
          Length = 691

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 65  FLLEVVQEVEESTSDEQ----IAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE 120
           FL+E    +  S +D+Q    + G   HSH  A  SE S    +GK  + + ++S  + +
Sbjct: 459 FLIEKCFILLVSPNDKQGLSLVNGHVGHSHHLALNSELSDQAGRGKSASTIQLKSPEDSQ 518

Query: 121 TA 122
            A
Sbjct: 519 AA 520


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 17 LLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEES 76
          +L W+      A + H+   +VL +L    + +A LP+  P  ++ R  L EV    + S
Sbjct: 1  MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60

Query: 77 TSD 79
          + D
Sbjct: 61 SRD 63


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 17 LLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEES 76
          +L W+      A + H+   +VL +L    + +A LP+  P  ++ R  L EV    + S
Sbjct: 1  MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60

Query: 77 TSD 79
          + D
Sbjct: 61 SRD 63


>gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 491

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 12/50 (24%)

Query: 139 DCPWGEEQRPGWTGDHA--RSRALQKCQSE----------GSGHRLGPFG 176
           + PWG++  PG +G H   R+RA+    +             G RLGP G
Sbjct: 276 NAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 17 LLVWELSSGPTADALHRQGLAVLLMLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEES 76
          +L W+      A + H+   +VL +L    + +A LP+  P  ++ R  L EV    + S
Sbjct: 1  MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60

Query: 77 TSD 79
          + D
Sbjct: 61 SRD 63


>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
           3-like [Homo sapiens]
          Length = 208

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 121 TALVF--PALEINVVPLNHKDCPWGEE--QRPGWTGDHARSRALQKCQSEGSGHRLGPFG 176
           T+ +F  P   I   P N      G+E  ++P     + R +ALQ C S+G G    P  
Sbjct: 53  TSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGS--SPLH 110

Query: 177 MMGKFAKVRRQELGSSLKQRGFQAAEEPEDP 207
           +    + +     G SL + G +    P +P
Sbjct: 111 LESVLSILAPGTAGESLDRAGAERVRSPLEP 141


>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
           protein 3-like 2 [Homo sapiens]
          Length = 204

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 121 TALVF--PALEINVVPLNHKDCPWGEE--QRPGWTGDHARSRALQKCQSEGSGHRLGPFG 176
           T+ +F  P   I   P N      G+E  ++P     + R +ALQ C S+G G    P  
Sbjct: 53  TSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGS--SPLH 110

Query: 177 MMGKFAKVRRQELGSSLKQRGFQAAEEPEDP 207
           +    + +     G SL + G +    P +P
Sbjct: 111 LESVLSILAPGTAGESLDRAGAERVRSPLEP 141


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,793,531
Number of Sequences: 37866
Number of extensions: 435810
Number of successful extensions: 1370
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 35
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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