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Search of human proteins with 239756704
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756704 PREDICTED: similar to NLRP1 protein [Homo sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756704 PREDICTED: similar to NLRP1 protein [Homo sapiens] 315 7e-87
gi|239751199 PREDICTED: hypothetical protein XP_002347754 [Homo ... 315 7e-87
gi|239745689 PREDICTED: hypothetical protein XP_002343527 [Homo ... 315 7e-87
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 38 0.003
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 36 0.010
gi|38194229 kelch-like 17 [Homo sapiens] 36 0.013
gi|218505835 membrane-associated guanylate kinase-related 3 iso... 35 0.017
gi|155969695 membrane-associated guanylate kinase-related 3 iso... 35 0.017
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 35 0.023
gi|34304381 inversin isoform a [Homo sapiens] 35 0.023
gi|34304379 inversin isoform b [Homo sapiens] 35 0.023
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 34 0.039
gi|110347437 latent transforming growth factor beta binding prot... 34 0.039
gi|110347412 latent transforming growth factor beta binding prot... 34 0.039
gi|110347431 latent transforming growth factor beta binding prot... 34 0.039
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 34 0.050
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens] 34 0.050
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.066
gi|46560555 transmembrane protein 132E [Homo sapiens] 33 0.066
gi|21265052 ADAM metallopeptidase with thrombospondin type 1 mot... 33 0.066
gi|110611167 ADAM metallopeptidase with thrombospondin type 1 mo... 33 0.066
gi|239047414 slingshot 1 isoform 1 [Homo sapiens] 33 0.086
gi|32261309 G protein-coupled receptor 135 [Homo sapiens] 33 0.086
gi|134031945 SCO-spondin [Homo sapiens] 33 0.086
gi|224028248 non-POU domain containing, octamer-binding isoform ... 33 0.11
gi|224028246 non-POU domain containing, octamer-binding isoform ... 33 0.11
gi|224028244 non-POU domain containing, octamer-binding isoform ... 33 0.11
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 33 0.11
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 32 0.15
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 32 0.15
>gi|239756704 PREDICTED: similar to NLRP1 protein [Homo sapiens]
Length = 146
Score = 315 bits (808), Expect = 7e-87
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG 60
MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG
Sbjct: 1 MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG 60
Query: 61 PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH 120
PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH
Sbjct: 61 PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH 120
Query: 121 VLEVSGTRGTCGCRPRRHAGPELAHS 146
VLEVSGTRGTCGCRPRRHAGPELAHS
Sbjct: 121 VLEVSGTRGTCGCRPRRHAGPELAHS 146
>gi|239751199 PREDICTED: hypothetical protein XP_002347754 [Homo
sapiens]
Length = 146
Score = 315 bits (808), Expect = 7e-87
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG 60
MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG
Sbjct: 1 MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG 60
Query: 61 PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH 120
PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH
Sbjct: 61 PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH 120
Query: 121 VLEVSGTRGTCGCRPRRHAGPELAHS 146
VLEVSGTRGTCGCRPRRHAGPELAHS
Sbjct: 121 VLEVSGTRGTCGCRPRRHAGPELAHS 146
>gi|239745689 PREDICTED: hypothetical protein XP_002343527 [Homo
sapiens]
Length = 146
Score = 315 bits (808), Expect = 7e-87
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG 60
MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG
Sbjct: 1 MPLDPYHSVTWGHAQGSHHFVFGELRVRPILESLRDEPDPDPRPSREGPAGRVGALARGG 60
Query: 61 PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH 120
PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH
Sbjct: 61 PEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSPGDH 120
Query: 121 VLEVSGTRGTCGCRPRRHAGPELAHS 146
VLEVSGTRGTCGCRPRRHAGPELAHS
Sbjct: 121 VLEVSGTRGTCGCRPRRHAGPELAHS 146
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 37.7 bits (86), Expect = 0.003
Identities = 36/138 (26%), Positives = 50/138 (36%), Gaps = 19/138 (13%)
Query: 5 PYHSVTWGHAQGSHHFVFGELRVR------PILESLRDEPDPDPRPSREGPAGRVGALAR 58
P ++TW + G V + +R P+ + P P PR G
Sbjct: 68 PEENLTWSSSGGDEK-VLPSIPLRCHSSSSPVCPRRKPRPRPQPRARSRSQPGL------ 120
Query: 59 GGPEPCDAASPPGGASCAPELARPREDKSAQQAKLEGG---TRLCCRCPEESRLVPGGAV 115
P P A PP P RPR + +++ G TR C + PGG
Sbjct: 121 SAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRPQTRRSCSGDLDGSGDPGGL- 179
Query: 116 SPGDHVLEVSGTRGTCGC 133
GD +LEV +G GC
Sbjct: 180 --GDWLLEVEFGQGPTGC 195
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 36.2 bits (82), Expect = 0.010
Identities = 39/117 (33%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 12 GHAQGSHHFVFGELRVRPIL--ESLRDEPDPDPRPSREG--PAGR--VGALARGGPEPCD 65
G A+G H R P++ LRD P P P P R G P R AR P C
Sbjct: 11 GRARGRPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCR 70
Query: 66 A--ASPPGGASCAPELARP---REDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSP 117
A SP G P A P R D+ A A+ E R +R +PG A +P
Sbjct: 71 ARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPE-------RQRVWARRLPGSAAAP 120
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 35.8 bits (81), Expect = 0.013
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 43 RPSREGPAGRVGALARGGPEP-CDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCC 101
+P E PAGR + G P P +A PP APE R R ++ A +EG +L
Sbjct: 2 QPRSERPAGRTQSPEHGSPGPGPEAPPPPPPQPPAPEAERTRPRQARPAAPMEGAVQLLS 61
Query: 102 R 102
R
Sbjct: 62 R 62
>gi|218505835 membrane-associated guanylate kinase-related 3
isoform 1 [Homo sapiens]
Length = 1481
Score = 35.4 bits (80), Expect = 0.017
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 26/80 (32%)
Query: 48 GPAGRVGALARGGPEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEES 107
GP G GA RGG E + P L R RE+ GGT CC
Sbjct: 24 GPPGDFGAEIRGGAERGEF----------PYLGRLREEPG-------GGT--CC------ 58
Query: 108 RLVPGGAVSPGDHVLEVSGT 127
+V G A SPGD +LEV+GT
Sbjct: 59 -VVSGKAPSPGDVLLEVNGT 77
>gi|155969695 membrane-associated guanylate kinase-related 3
isoform 2 [Homo sapiens]
Length = 1125
Score = 35.4 bits (80), Expect = 0.017
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 26/80 (32%)
Query: 48 GPAGRVGALARGGPEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEES 107
GP G GA RGG E + P L R RE+ GGT CC
Sbjct: 24 GPPGDFGAEIRGGAERGEF----------PYLGRLREEPG-------GGT--CC------ 58
Query: 108 RLVPGGAVSPGDHVLEVSGT 127
+V G A SPGD +LEV+GT
Sbjct: 59 -VVSGKAPSPGDVLLEVNGT 77
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 35.0 bits (79), Expect = 0.023
Identities = 34/110 (30%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 38 PDPDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGT 97
P P P P P + P P +PP G AP PR + +A EGG
Sbjct: 20 PGPPPPPPPAPPQQQ--------PPPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEGGP 71
Query: 98 RLCCRCPEESRLVPGGAVSPGDHVLEVSGTRGTCG-----CRPRRHAGPE 142
R R + S PG +PG G CG C P AGPE
Sbjct: 72 RGRLRSRDSSCGRPG---TPGAASTAKGSPNGECGRGEPQCSP---AGPE 115
Score = 29.6 bits (65), Expect = 0.95
Identities = 32/105 (30%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 42 PRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCC 101
PR R P G A A GP P ASPP GA +P R A L G
Sbjct: 755 PRLVRRPPPGPAPAAASPGPPP--PASPP-GAPASPRAPRTSPYGGLPAAPLAGPALPAR 811
Query: 102 RCPEESR-------LVPGGAVSPGDHVLEVSGTRGTCGCRPRRHA 139
R SR +P GA P S + G P A
Sbjct: 812 RLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARA 856
>gi|34304381 inversin isoform a [Homo sapiens]
Length = 1065
Score = 35.0 bits (79), Expect = 0.023
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 29 PILESLRDEPDPDPR-PSREGPAGRVGALARGGPEPCDAASPPGGA 73
P L S +D P R PS++ PAG V GPEP D+ PGG+
Sbjct: 624 PCLPSTQDVPSRQSRAPSKQPPAGNVAQ----GPEPRDSRGSPGGS 665
>gi|34304379 inversin isoform b [Homo sapiens]
Length = 895
Score = 35.0 bits (79), Expect = 0.023
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 29 PILESLRDEPDPDPR-PSREGPAGRVGALARGGPEPCDAASPPGGA 73
P L S +D P R PS++ PAG V GPEP D+ PGG+
Sbjct: 624 PCLPSTQDVPSRQSRAPSKQPPAGNVAQ----GPEPRDSRGSPGGS 665
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 34.3 bits (77), Expect = 0.039
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 23 GELRVRPILESLRDEPDPDPRPS--REGP---AGRVGALARGGPEPCDAASPPGGAS-CA 76
G LR +P L++ R EP + S P + R +++ G + C A PPGG+S A
Sbjct: 130 GRLRAKPALQTQRKEPLVFTQRSLLHSSPRWFSSRHSSISEGEGDRCGFAEPPGGSSPPA 189
Query: 77 PELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGG 113
P L P + S Q E + + P S P G
Sbjct: 190 PPLPPPPKPGSPTQRAREASS---WKPPGHSHTAPPG 223
>gi|110347437 latent transforming growth factor beta binding protein
4 isoform c [Homo sapiens]
Length = 1557
Score = 34.3 bits (77), Expect = 0.039
Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 35 RDEPDPDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPR---EDKSAQQA 91
R EP PDPRP E P + A GPE ++ G P++ P S
Sbjct: 446 RPEPRPDPRPGPELPLPSIPAWT--GPEIPESGPSSGMCQRNPQVCGPGRCISRPSGYTC 503
Query: 92 KLEGGTRLC-----CRCPEESRLVPGGAVSPGDHVLEVSGTRGTCGCRPRRHAGPELA 144
+ G RL C +E R VP +PG E S C C P AGP A
Sbjct: 504 ACDSGFRLSPQGTRCIDVDECRRVP-PPCAPGR--CENSPGSFRCVCGPGFRAGPRAA 558
Score = 29.3 bits (64), Expect = 1.2
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 58 RGGPEPCDAASPPGGASCAPELARPREDKSAQQAK-LEGGTR-LCCRCPE 105
R PEP PP G S A LA P E+ A++ L+G T C R PE
Sbjct: 1440 RSFPEP---EEPPEGGSYAGSLAEPYEELEAEECGILDGCTNGRCVRVPE 1486
>gi|110347412 latent transforming growth factor beta binding protein
4 isoform b [Homo sapiens]
Length = 1587
Score = 34.3 bits (77), Expect = 0.039
Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 35 RDEPDPDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPR---EDKSAQQA 91
R EP PDPRP E P + A GPE ++ G P++ P S
Sbjct: 476 RPEPRPDPRPGPELPLPSIPAWT--GPEIPESGPSSGMCQRNPQVCGPGRCISRPSGYTC 533
Query: 92 KLEGGTRLC-----CRCPEESRLVPGGAVSPGDHVLEVSGTRGTCGCRPRRHAGPELA 144
+ G RL C +E R VP +PG E S C C P AGP A
Sbjct: 534 ACDSGFRLSPQGTRCIDVDECRRVP-PPCAPGR--CENSPGSFRCVCGPGFRAGPRAA 588
Score = 29.3 bits (64), Expect = 1.2
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 58 RGGPEPCDAASPPGGASCAPELARPREDKSAQQAK-LEGGTR-LCCRCPE 105
R PEP PP G S A LA P E+ A++ L+G T C R PE
Sbjct: 1470 RSFPEP---EEPPEGGSYAGSLAEPYEELEAEECGILDGCTNGRCVRVPE 1516
>gi|110347431 latent transforming growth factor beta binding protein
4 isoform a [Homo sapiens]
Length = 1624
Score = 34.3 bits (77), Expect = 0.039
Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 35 RDEPDPDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPR---EDKSAQQA 91
R EP PDPRP E P + A GPE ++ G P++ P S
Sbjct: 513 RPEPRPDPRPGPELPLPSIPAWT--GPEIPESGPSSGMCQRNPQVCGPGRCISRPSGYTC 570
Query: 92 KLEGGTRLC-----CRCPEESRLVPGGAVSPGDHVLEVSGTRGTCGCRPRRHAGPELA 144
+ G RL C +E R VP +PG E S C C P AGP A
Sbjct: 571 ACDSGFRLSPQGTRCIDVDECRRVP-PPCAPGR--CENSPGSFRCVCGPGFRAGPRAA 625
Score = 29.3 bits (64), Expect = 1.2
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 58 RGGPEPCDAASPPGGASCAPELARPREDKSAQQAK-LEGGTR-LCCRCPE 105
R PEP PP G S A LA P E+ A++ L+G T C R PE
Sbjct: 1507 RSFPEP---EEPPEGGSYAGSLAEPYEELEAEECGILDGCTNGRCVRVPE 1553
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 33.9 bits (76), Expect = 0.050
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 16/65 (24%)
Query: 37 EPDPDPRPSREGPAGRVGALARGGPEPCDAAS-----PPGGASCAPELARPREDKSAQQA 91
EP D R G RGGP P A++ PP G+S + E P ED+ Q
Sbjct: 2 EPGGDHRSRSSG--------GRGGPGPAVASARGRRLPPAGSSGSAE---PEEDEGGQDL 50
Query: 92 KLEGG 96
+LEGG
Sbjct: 51 QLEGG 55
>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
Length = 196
Score = 33.9 bits (76), Expect = 0.050
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 28 RPILESLRDEPDPDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPREDKS 87
RP ++S+ P + PS R R GP P A+ P G A RP + +
Sbjct: 75 RPQVQSIDTTPSGEGAPS----FSRAQRPGRSGPSPSLASDPAPGRGAAWGSLRPGKRQQ 130
Query: 88 AQQAKLEGGTRLCCRCPEESRLVPGG 113
A +++ G R E +PGG
Sbjct: 131 ALESEAGGRASREARAAEVRERIPGG 156
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.5 bits (75), Expect = 0.066
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 40 PDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPREDKSAQQAKLEGGTRL 99
P P P GPAG+ G GP A P G+ AP PR DK + G +
Sbjct: 1049 PGP-PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKG 1107
Query: 100 CCRCPEESRLVPGGAVSPGDHVLEVSGTRGTCG----CRPRRHAGP 141
P PG SPG +G +G G PR GP
Sbjct: 1108 HRGFPGN----PGAPGSPGP-----AGQQGAIGSPGPAGPRGPVGP 1144
Score = 31.2 bits (69), Expect = 0.33
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 38 PDPDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPR 83
P D P ++GP G G + GP GGA P +A PR
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPR 794
Score = 27.3 bits (59), Expect = 4.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 35 RDEPDPDPRPSREGPAGRVGALARGGPE----PCDAASPPG 71
R P P GPAG+ GA+ GP P + PPG
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPG 1149
>gi|46560555 transmembrane protein 132E [Homo sapiens]
Length = 984
Score = 33.5 bits (75), Expect = 0.066
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 35 RDEPDPD---PRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARP 82
RDE DP P PS+ GP G G + A PPG A APE P
Sbjct: 725 RDEEDPTYDYPGPSQPGPGG--------GEDEARGAGPPGSALPAPEAPGP 767
>gi|21265052 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 2 preproprotein [Homo sapiens]
Length = 1223
Score = 33.5 bits (75), Expect = 0.066
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 38 PDPDPRPSREGPAGRVGALARGGPEPCDAASPPG 71
P PDP P+ P G+ G +P DAA PPG
Sbjct: 1102 PGPDPGPTSLPPFSTPGSPLPGPQDPADAAEPPG 1135
>gi|110611167 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 1 preproprotein [Homo sapiens]
Length = 1226
Score = 33.5 bits (75), Expect = 0.066
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 38 PDPDPRPSREGPAGRVGALARGGPEPCDAASPPG 71
P PDP P+ P G+ G +P DAA PPG
Sbjct: 1105 PGPDPGPTSLPPFSTPGSPLPGPQDPADAAEPPG 1138
>gi|239047414 slingshot 1 isoform 1 [Homo sapiens]
Length = 1049
Score = 33.1 bits (74), Expect = 0.086
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 31 LESLRDEP-DPDPRPSREGPAGRVGA-LARGGPEPCDAASPPGGASCAPELARPREDKSA 88
LE L+ P DP P PSR+GPA R+ A + +P AA G P A E A
Sbjct: 829 LERLKSVPADPAP-PSRDGPASRLEASIPEESQDP--AALHELGPLVMPSQAGSDEKSEA 885
Query: 89 QQAKLEGGT 97
A LEGG+
Sbjct: 886 APASLEGGS 894
>gi|32261309 G protein-coupled receptor 135 [Homo sapiens]
Length = 494
Score = 33.1 bits (74), Expect = 0.086
Identities = 37/110 (33%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 36 DEPDPDPRPSREGPAGRVGALARGGPEPCDAASPPGGASCAPELARPREDKSAQQAKLEG 95
+EP P PRP +G+ G P AA PPGG S A A A L
Sbjct: 2 EEPQP-PRPPAS--MALLGSQHSGAPS---AAGPPGGTSSA-----------ATAAVLSF 44
Query: 96 GTRLCCRCPEESRLVPGG-AVSPGDHVLEVSGTRGTCGCRPRRHAGPELA 144
T S GG A +PG L SG G RR GPE A
Sbjct: 45 STVATAALGNLSDASGGGTAAAPGGGGLGGSGAAREAGAAVRRPLGPEAA 94
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 33.1 bits (74), Expect = 0.086
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 32 ESLRDEPDPDPRPSREGPAGRVGALARG---GPEPCDAASPPGGASCAPELARPREDKSA 88
+SLR P PS+ G A G + P PC+A P G PR
Sbjct: 4024 QSLRSRSCSSP-PSKNGGAPCAGERHQARLCNPMPCEAGCPAGMEVVTCANRCPRRCSDL 4082
Query: 89 QQAKLEGGTRLC---CRCPEESRLVPGGAVSPG 118
Q+ + ++C CRCP+ S GG V G
Sbjct: 4083 QEGIVCQDDQVCQKGCRCPKGSLEQDGGCVPIG 4115
Score = 28.1 bits (61), Expect = 2.8
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 59 GGPEP-CDAASPPGGASCAPELARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSP 117
GGP P C+A CA + D + L+G R CRCP PG V
Sbjct: 4661 GGPCPECEAQDTVFTLDCANQCPHSCADLWDRVQCLQGPCRPGCRCP------PGQLVQD 4714
Query: 118 GDHVLEVSGTRGTCGCRPRRHAGPELA 144
G + +S R CG P +A ELA
Sbjct: 4715 G-RCVPISSCR--CGL-PSANASWELA 4737
>gi|224028248 non-POU domain containing, octamer-binding isoform 2
[Homo sapiens]
Length = 382
Score = 32.7 bits (73), Expect = 0.11
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 27/113 (23%)
Query: 32 ESLRDEPDPDPRPSREGPAG----------RVGALARGG-------------PEPCDAAS 68
E +R + + R +EG G R+G +A GG P P +
Sbjct: 264 EEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPA 323
Query: 69 PPGGASCAPE----LARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSP 117
PPG A+ P+ L P ++ Q A +EG + P +R PG +P
Sbjct: 324 PPGPATMMPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAP 376
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 32.7 bits (73), Expect = 0.11
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 27/113 (23%)
Query: 32 ESLRDEPDPDPRPSREGPAG----------RVGALARGG-------------PEPCDAAS 68
E +R + + R +EG G R+G +A GG P P +
Sbjct: 353 EEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPA 412
Query: 69 PPGGASCAPE----LARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSP 117
PPG A+ P+ L P ++ Q A +EG + P +R PG +P
Sbjct: 413 PPGPATMMPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAP 465
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 32.7 bits (73), Expect = 0.11
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 27/113 (23%)
Query: 32 ESLRDEPDPDPRPSREGPAG----------RVGALARGG-------------PEPCDAAS 68
E +R + + R +EG G R+G +A GG P P +
Sbjct: 353 EEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPA 412
Query: 69 PPGGASCAPE----LARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSP 117
PPG A+ P+ L P ++ Q A +EG + P +R PG +P
Sbjct: 413 PPGPATMMPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAP 465
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 32.7 bits (73), Expect = 0.11
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 27/113 (23%)
Query: 32 ESLRDEPDPDPRPSREGPAG----------RVGALARGG-------------PEPCDAAS 68
E +R + + R +EG G R+G +A GG P P +
Sbjct: 353 EEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPA 412
Query: 69 PPGGASCAPE----LARPREDKSAQQAKLEGGTRLCCRCPEESRLVPGGAVSP 117
PPG A+ P+ L P ++ Q A +EG + P +R PG +P
Sbjct: 413 PPGPATMMPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAP 465
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 25 LRVRPILESLRDEPDPDPRPSREGPAG--RVGALARGGPEPCDAASPPGGASCA------ 76
L + P + S +E +P+P + G + G ARG P P A PP G
Sbjct: 954 LHLVPFIHSAAEEAEPEPELAAPGEDAEPQAGPSARGSPSPA-APGPPAGPLPRMDLPLA 1012
Query: 77 ------PELARPREDKSAQQAKLEGGTRLCCRCPEE 106
P ARPR + GG ++ P+E
Sbjct: 1013 GQPLRHPTRARPRPRRQHHHRPPPGGPQVPPALPQE 1048
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 32.3 bits (72), Expect = 0.15
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 35 RDEPDPDPRPSREGPAGRVGA-LARGGPEPCDAASPPGGASCAPELARPREDKSAQQAKL 93
R PDPD + R G VGA LARG ++ P +S P +A P + QQ ++
Sbjct: 111 RPVPDPDLQ-RRAGSGTGVGAMLARG-------SASPHKSSPQPLVATPSQHHQQQQQQI 162
Query: 94 EGGTRLCCRC 103
+ R+C C
Sbjct: 163 KRSARMCGEC 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,466,582
Number of Sequences: 37866
Number of extensions: 533229
Number of successful extensions: 3664
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 3173
Number of HSP's gapped (non-prelim): 723
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.