Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287449 Sequence: fasta or formatted (146aa) NCBI GI: 239745689
Description:

PREDICTED: hypothetical protein XP_002343527

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         14           2
 C cysteine            4.8          7           2
 D aspartate           4.8          7           1
 E glutamate           8.2         12           2
 F phenylalanine       1.4          2           1
 G glycine            13.0         19           2
 H histidine           4.8          7           2
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine             7.5         11           1
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            13.0         19           2
 Q glutamine           2.1          3           2
 R arginine           11.0         16           2
 S serine              7.5         11           1
 T threonine           2.7          4           1
 V valine              5.5          8           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343527 
LOC100292020          1.000   PREDICTED: similar to NLRP1 protein 
LOC100291139          1.000   PREDICTED: hypothetical protein XP_002347754 
USP51                 0.045   ubiquitin specific protease 51 
LOC729370             0.038   PREDICTED: hypothetical protein 
KLHL17                0.038   kelch-like 17 
MAGI3                 0.034   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.034   membrane-associated guanylate kinase-related  3 iso...
HCN2                  0.034   hyperpolarization activated cyclic nucleotide-gated...
INVS                  0.034   inversin isoform a 
INVS                  0.034   inversin isoform b 
LOC100292378          0.031   PREDICTED: hypothetical protein 
LTBP4                 0.031   latent transforming growth factor beta binding prot...
LTBP4                 0.031   latent transforming growth factor beta binding prot...
LTBP4                 0.031   latent transforming growth factor beta binding prot...
LOC65998              0.031   hypothetical protein LOC65998 
LOC645722             0.031   PREDICTED: similar to hCG2037003 
COL3A1                0.028   collagen type III alpha 1 preproprotein 
TMEM132E              0.028   transmembrane protein 132E 
ADAMTS14              0.028   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.028   ADAM metallopeptidase with thrombospondin type 1 mo...
SSH1                  0.028   slingshot 1 isoform 1 
GPR135                0.028   G protein-coupled receptor 135 
SSPO                  0.028   SCO-spondin 
NONO                  0.028   non-POU domain containing, octamer-binding isoform ...
NONO                  0.028   non-POU domain containing, octamer-binding isoform ...
NONO                  0.028   non-POU domain containing, octamer-binding isoform ...
NONO                  0.028   non-POU domain containing, octamer-binding isoform 1...
RLTPR                 0.024   RGD motif, leucine rich repeats, tropomodulin domain...
CXXC1                 0.024   CXXC finger 1 (PHD domain) isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press