Guide to the Human Genome
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Name: LOC100293741 Sequence: fasta or formatted (236aa) NCBI GI: 239756669
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         35           2
 C cysteine            1.3          3           1
 D aspartate           5.1         12           1
 E glutamate           4.2         10           1
 F phenylalanine       2.1          5           1
 G glycine            13.6         32           3
 H histidine           2.5          6           1
 I isoleucine          0.4          1           1
 K lysine              1.7          4           1
 L leucine             7.6         18           2
 M methionine          1.3          3           1
 N asparagine          0.8          2           1
 P proline             8.1         19           2
 Q glutamine           8.9         21           2
 R arginine            5.5         13           1
 S serine              6.4         15           1
 T threonine           4.2         10           2
 V valine              7.2         17           3
 W tryptophan          3.8          9           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290304          1.000   PREDICTED: hypothetical protein XP_002347738 
APBB1IP               0.030   amyloid beta (A4) precursor protein-binding, family ...
LOC100132168          0.021   PREDICTED: hypothetical protein 
KDM1                  0.021   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.021   amine oxidase (flavin containing) domain 2 isoform b...
PTPN18                0.017   protein tyrosine phosphatase, non-receptor type 18 ...
PTPN18                0.017   protein tyrosine phosphatase, non-receptor type 18 i...
LOC728767             0.015   PREDICTED: hypothetical protein 
LOC728767             0.015   PREDICTED: hypothetical protein 
UNK                   0.015   zinc finger CCCH-type domain containing 5 
HTT                   0.015   huntingtin 
ZNF282                0.015   zinc finger protein 282 
LOC100288007          0.013   PREDICTED: hypothetical protein 
LOC646509             0.013   PREDICTED: hypothetical protein 
LOC100288007          0.013   PREDICTED: hypothetical protein XP_002342192 
ZC3H3                 0.013   zinc finger CCCH-type containing 3 
LOC100131851          0.013   PREDICTED: hypothetical protein 
LOC100130751          0.013   PREDICTED: hypothetical protein 
LOC100131851          0.013   PREDICTED: hypothetical protein 
ZC3H10                0.013   zinc finger CCCH-type containing 10 
CDH22                 0.013   cadherin 22 precursor 
LOC100127987          0.011   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.011   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.011   PREDICTED: hypothetical protein LOC100127987 
NKX2-3                0.011   NK2 transcription factor related, locus 3 
FUBP1                 0.011   far upstream element-binding protein 
NAIF1                 0.011   nuclear apoptosis inducing factor 1 
RASIP1                0.011   Ras-interacting protein 1 
LOC100292655          0.011   PREDICTED: similar to armadillo repeat containing, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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