Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132944 Sequence: fasta or formatted (273aa) NCBI GI: 239750999
Description:

PREDICTED: similar to hCG2045457

Not currently referenced in the text

Other entries for this name:
alt mRNA {273aa} PREDICTED: similar to hCG2045457
alt prot {337aa} PREDICTED: similar to hCG2045457
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         31           2
 C cysteine            1.8          5           1
 D aspartate           4.0         11           1
 E glutamate           5.9         16           2
 F phenylalanine       2.2          6           1
 G glycine             5.1         14           2
 H histidine           3.3          9           1
 I isoleucine          1.8          5           1
 K lysine              4.4         12           1
 L leucine            10.3         28           2
 M methionine          1.8          5           1
 N asparagine          1.8          5           1
 P proline             8.4         23           2
 Q glutamine           2.6          7           2
 R arginine            9.5         26           2
 S serine              7.3         20           2
 T threonine           4.8         13           1
 V valine              9.2         25           1
 W tryptophan          4.0         11           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2045457 
LOC100132944          1.000   PREDICTED: similar to hCG2045457 
LOC100132944          0.827   PREDICTED: similar to hCG2045457 
LOC100292004          0.015   PREDICTED: hypothetical protein XP_002346201 
LOC100291083          0.015   PREDICTED: hypothetical protein XP_002347078 
LOC100287493          0.015   PREDICTED: hypothetical protein XP_002342943 
PLXNB3                0.009   plexin B3 isoform 1 
PLXNB3                0.009   plexin B3 isoform 2 
DAB1                  0.009   disabled homolog 1 
PCNXL3                0.006   pecanex-like 3 
FOXI3                 0.006   forkhead box I3 
USP24                 0.006   ubiquitin specific protease 24 
KIAA0947              0.006   hypothetical protein LOC23379 
SMTN                  0.006   smoothelin isoform b 
SMTN                  0.006   smoothelin isoform c 
SMTN                  0.006   smoothelin isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press