Guide to the Human Genome
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Name: LOC100131530 Sequence: fasta or formatted (299aa) NCBI GI: 169215573
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {299aa} PREDICTED: hypothetical protein
alt mRNA {299aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         19           2
 C cysteine            4.7         14           2
 D aspartate           2.0          6           2
 E glutamate           4.0         12           3
 F phenylalanine       3.3         10           1
 G glycine            11.4         34           2
 H histidine           1.3          4           1
 I isoleucine          2.7          8           1
 K lysine              1.7          5           1
 L leucine            10.7         32           2
 M methionine          2.0          6           1
 N asparagine          1.0          3           1
 P proline            11.0         33           2
 Q glutamine           6.4         19           2
 R arginine            6.0         18           2
 S serine              9.4         28           2
 T threonine           4.7         14           1
 V valine              7.7         23           2
 W tryptophan          3.0          9           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131530          1.000   PREDICTED: hypothetical protein 
LOC100131530          1.000   PREDICTED: hypothetical protein 
FLJ30375              0.015   PREDICTED: hypothetical protein 
FLJ30375              0.015   PREDICTED: hypothetical protein 
FLJ30375              0.015   PREDICTED: hypothetical protein 
LOC100289444          0.012   PREDICTED: hypothetical protein 
LOC100289444          0.012   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.012   PREDICTED: hypothetical protein 
LOC100293662          0.012   PREDICTED: hypothetical protein 
TFR2                  0.012   transferrin receptor 2 
MEGF6                 0.012   EGF-like-domain, multiple 3 
MAVS                  0.012   virus-induced signaling adapter 
HS3ST4                0.012   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
WNK4                  0.010   WNK lysine deficient protein kinase 4 
LOC100129979          0.010   PREDICTED: similar to FLJ00287 protein 
SFPQ                  0.010   splicing factor proline/glutamine rich (polypyrimidin...
LOC100128528          0.008   PREDICTED: hypothetical protein 
LOC100128528          0.008   PREDICTED: hypothetical protein 
LOC100128528          0.008   PREDICTED: hypothetical protein 
LOC100132024          0.008   PREDICTED: similar to FLJ00287 protein 
LOC100293313          0.008   PREDICTED: hypothetical protein 
LOC100290927          0.008   PREDICTED: hypothetical protein XP_002346500 
LOC100289192          0.008   PREDICTED: hypothetical protein XP_002342357 
PAPLN                 0.008   papilin 
FAM109A               0.008   hypothetical protein LOC144717 
ITGA5                 0.008   integrin alpha 5 precursor 
LOC100129979          0.008   PREDICTED: similar to FLJ00287 protein 
MEST                  0.008   mesoderm specific transcript isoform a 
MEST                  0.008   mesoderm specific transcript isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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