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Search of human proteins with 239756272
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756272 PREDICTED: hypothetical protein XP_002344878 [Homo
sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756272 PREDICTED: hypothetical protein XP_002344878 [Homo ... 297 2e-81
gi|239750813 PREDICTED: hypothetical protein XP_002347569 [Homo ... 297 2e-81
gi|239745173 PREDICTED: hypothetical protein XP_002343380 [Homo ... 297 2e-81
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 33 0.060
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 33 0.060
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens] 33 0.060
gi|239752802 PREDICTED: hypothetical protein [Homo sapiens] 33 0.078
gi|239747364 PREDICTED: hypothetical protein [Homo sapiens] 33 0.078
gi|239741189 PREDICTED: hypothetical protein XP_002342132 [Homo ... 33 0.078
gi|221139926 NHS-like 1 [Homo sapiens] 33 0.10
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens] 32 0.23
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 31 0.30
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 31 0.30
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 31 0.30
gi|46909596 a disintegrin and metalloproteinase domain 15 isofor... 31 0.39
gi|46909594 a disintegrin and metalloproteinase domain 15 isofor... 30 0.50
gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo ... 30 0.66
gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo ... 30 0.66
gi|42544243 dynamin 3 isoform a [Homo sapiens] 30 0.66
gi|209915561 dynamin 3 isoform b [Homo sapiens] 30 0.66
gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens] 30 0.66
gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens] 30 0.66
gi|169213703 PREDICTED: hypothetical protein [Homo sapiens] 30 0.86
gi|40548408 p30 DBC protein [Homo sapiens] 30 0.86
gi|24432106 p30 DBC protein [Homo sapiens] 30 0.86
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 30 0.86
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 30 0.86
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 30 0.86
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 29 1.1
gi|157688564 diacylglycerol kinase zeta isoform 4 [Homo sapiens] 29 1.1
>gi|239756272 PREDICTED: hypothetical protein XP_002344878 [Homo
sapiens]
Length = 141
Score = 297 bits (761), Expect = 2e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP
Sbjct: 1 MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
Query: 61 ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW
Sbjct: 61 ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
Query: 121 EGKSRLARPCLSQALEACQLT 141
EGKSRLARPCLSQALEACQLT
Sbjct: 121 EGKSRLARPCLSQALEACQLT 141
>gi|239750813 PREDICTED: hypothetical protein XP_002347569 [Homo
sapiens]
Length = 141
Score = 297 bits (761), Expect = 2e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP
Sbjct: 1 MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
Query: 61 ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW
Sbjct: 61 ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
Query: 121 EGKSRLARPCLSQALEACQLT 141
EGKSRLARPCLSQALEACQLT
Sbjct: 121 EGKSRLARPCLSQALEACQLT 141
>gi|239745173 PREDICTED: hypothetical protein XP_002343380 [Homo
sapiens]
Length = 141
Score = 297 bits (761), Expect = 2e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP
Sbjct: 1 MERPCHRMGCCSLRRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARPLLQRLASRHP 60
Query: 61 ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW
Sbjct: 61 ASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHSAALLVPVKPPTAW 120
Query: 121 EGKSRLARPCLSQALEACQLT 141
EGKSRLARPCLSQALEACQLT
Sbjct: 121 EGKSRLARPCLSQALEACQLT 141
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 33.5 bits (75), Expect = 0.060
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 48 ARPLLQRLASRH-PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFH 106
A P+ R A R P +P SQ +P ++ P GV + P R H H AP H
Sbjct: 83 ALPMSHRPAPRQKPFPVPTSQ--------SPSVVSDTPAGVFVRAPSPRAKAHAH-APTH 133
Query: 107 SAALLVPVKPP----TAWEGKSRLARPCLSQALEA 137
S + K + G+SRLAR L+ ++A
Sbjct: 134 SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQA 168
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 33.5 bits (75), Expect = 0.060
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 48 ARPLLQRLASRH-PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFH 106
A P+ R A R P +P SQ +P ++ P GV + P R H H AP H
Sbjct: 83 ALPMSHRPAPRQKPFPVPTSQ--------SPSVVSDTPAGVFVRAPSPRAKAHAH-APTH 133
Query: 107 SAALLVPVKPP----TAWEGKSRLARPCLSQALEA 137
S + K + G+SRLAR L+ ++A
Sbjct: 134 SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQA 168
>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 33.5 bits (75), Expect = 0.060
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 48 ARPLLQRLASRH-PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFH 106
A P+ R A R P +P SQ +P ++ P GV + P R H H AP H
Sbjct: 83 ALPMSHRPAPRQKPFPVPTSQ--------SPSVVSDTPAGVFVRAPSPRAKAHAH-APTH 133
Query: 107 SAALLVPVKPP----TAWEGKSRLARPCLSQALEA 137
S + K + G+SRLAR L+ ++A
Sbjct: 134 SLLSIPGAKTSRSRCSPSPGRSRLARRPLAHLIQA 168
>gi|239752802 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.078
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 13 LRRRQSGVTLRGAV---VSGGVRL-PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQ 68
L R +G T GA VS + L P+ +R P+RP L R + R P +
Sbjct: 2 LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRMTHSGKF 61
Query: 69 LLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
S R P+ +L + T ++ GH+HP P
Sbjct: 62 YRTTSLRQRPVRNNLFFRLPTTQTQSQSTGHYHPPP 97
>gi|239747364 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.078
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 13 LRRRQSGVTLRGAV---VSGGVRL-PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQ 68
L R +G T GA VS + L P+ +R P+RP L R + R P +
Sbjct: 2 LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRMTHSGKF 61
Query: 69 LLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
S R P+ +L + T ++ GH+HP P
Sbjct: 62 YRTTSLRQRPVRNNLFFRLPTTQTQSQSTGHYHPPP 97
>gi|239741189 PREDICTED: hypothetical protein XP_002342132 [Homo
sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.078
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 13 LRRRQSGVTLRGAV---VSGGVRL-PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQ 68
L R +G T GA VS + L P+ +R P+RP L R + R P +
Sbjct: 2 LGSRYAGQTFSGASPRGVSDALLLAPSGRQRSRDTVASPSRPSLSRPSPRTPRMTHSGKF 61
Query: 69 LLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
S R P+ +L + T ++ GH+HP P
Sbjct: 62 YRTTSLRQRPVRNNLFFRLPTTQTQSQSTGHYHPPP 97
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 32.7 bits (73), Expect = 0.10
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 44 CPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPA 103
C P RP L + P SLP LL SS PP P P + T P + G
Sbjct: 989 CLSPPRPALSPILPDSPVSLPLPPPLL-PSSEPPPAPPLDPKFMKDTRPPFTNSGQ---- 1043
Query: 104 PFHSAALLVPVKPPTAWEGKSRLARPCL-SQALEACQL 140
P S L +PP+ E SR P + ++AL+ QL
Sbjct: 1044 PESSRGSL---RPPSTKEETSRPPMPLITTEALQMVQL 1078
>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
Length = 924
Score = 31.6 bits (70), Expect = 0.23
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 42 SCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLP 84
S P+PA P Q PA P S W S PPL P+ P
Sbjct: 89 SALPIPATPPTQA----QPAMTPASASPSWGSHSTPPLAPATP 127
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 31.2 bits (69), Expect = 0.30
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 45 PLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
P PA L L++ HP S L S+ P P+ P G+ + L P H P
Sbjct: 411 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTG 470
Query: 105 FHSAA 109
H A
Sbjct: 471 LHQVA 475
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 31.2 bits (69), Expect = 0.30
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 45 PLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
P PA L L++ HP S L S+ P P+ P G+ + L P H P
Sbjct: 965 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTG 1024
Query: 105 FHSAA 109
H A
Sbjct: 1025 LHQVA 1029
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 31.2 bits (69), Expect = 0.30
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 45 PLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
P PA L L++ HP S L S+ P P+ P G+ + L P H P
Sbjct: 965 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTG 1024
Query: 105 FHSAA 109
H A
Sbjct: 1025 LHQVA 1029
>gi|46909596 a disintegrin and metalloproteinase domain 15 isoform 4
preproprotein [Homo sapiens]
Length = 838
Score = 30.8 bits (68), Expect = 0.39
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 2 ERPCHRMG-CCSLRRRQSGVTLRG-----AVVSGGVRLPASERRFLSCCPLPARPLLQRL 55
+R C G C R QSG + R A+++ G + ++R PLPA P+++
Sbjct: 723 QRLCQLKGPTCQYRAAQSGPSERPGPPQRALLARGTKAELADRPNPPTRPLPADPVVRSP 782
Query: 56 ASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHS-AALLVPV 114
S+ PA P PP P L DP R P P P L+VP
Sbjct: 783 KSQGPAKPP------------PPRKP------LPADPQGRCPSGDLPGPGAGIPPLVVPS 824
Query: 115 KP 116
+P
Sbjct: 825 RP 826
>gi|46909594 a disintegrin and metalloproteinase domain 15 isoform 3
preproprotein [Homo sapiens]
Length = 839
Score = 30.4 bits (67), Expect = 0.50
Identities = 37/128 (28%), Positives = 46/128 (35%), Gaps = 36/128 (28%)
Query: 2 ERPCHRMG-CCSLRRRQSG-----------VTLRGAVVSGGVRLPASERRFLSCCPLPAR 49
+R C G C R QSG + RG + + PA R PLP
Sbjct: 723 QRLCQLKGPTCQYRAAQSGPSERPGPPQRALLARGTKQASALSFPAPPSR-----PLPPD 777
Query: 50 PLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPFHS-A 108
P+ +RL S+ PA P PP P L DP R P P P
Sbjct: 778 PVSKRLQSQGPAKPP------------PPRKP------LPADPQGRCPSGDLPGPGAGIP 819
Query: 109 ALLVPVKP 116
L+VP +P
Sbjct: 820 PLVVPSRP 827
>gi|239751803 PREDICTED: hypothetical protein XP_002348005 [Homo
sapiens]
Length = 260
Score = 30.0 bits (66), Expect = 0.66
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 5 CHRMGCCSLRRRQSGVTLRGAVVSGGVRLPA 35
C R G S RRR G+ LRGA +SG PA
Sbjct: 86 CGRCGRHSYRRRSLGLKLRGAWLSGDASPPA 116
>gi|239746294 PREDICTED: hypothetical protein XP_002343725 [Homo
sapiens]
Length = 260
Score = 30.0 bits (66), Expect = 0.66
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 5 CHRMGCCSLRRRQSGVTLRGAVVSGGVRLPA 35
C R G S RRR G+ LRGA +SG PA
Sbjct: 86 CGRCGRHSYRRRSLGLKLRGAWLSGDASPPA 116
>gi|42544243 dynamin 3 isoform a [Homo sapiens]
Length = 863
Score = 30.0 bits (66), Expect = 0.66
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 60 PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPF------HSAALLVP 113
PA P + S R+PP P+ ++ PL R PAP HS A VP
Sbjct: 747 PAPPPVDDSWIQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVP 806
Query: 114 VKP 116
+P
Sbjct: 807 FRP 809
>gi|209915561 dynamin 3 isoform b [Homo sapiens]
Length = 859
Score = 30.0 bits (66), Expect = 0.66
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 60 PASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAPF------HSAALLVP 113
PA P + S R+PP P+ ++ PL R PAP HS A VP
Sbjct: 743 PAPPPVDDSWIQHSRRSPPPSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVP 802
Query: 114 VKP 116
+P
Sbjct: 803 FRP 805
>gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens]
Length = 2540
Score = 30.0 bits (66), Expect = 0.66
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 40 FLSCCPLPARPLLQRLA----SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTR 95
FLS P P R + HPA P L SS+ P L + T PLT
Sbjct: 732 FLSQHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTP-------LPTINTHPLTS 784
Query: 96 HPGH--HHPAPFHSAALLVPVKPPTAWEG 122
P H HHP H ++P P + G
Sbjct: 785 GPHHAVHHP---HLLPTVLPGVPTASLLG 810
>gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens]
Length = 2303
Score = 30.0 bits (66), Expect = 0.66
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 40 FLSCCPLPARPLLQRLA----SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTR 95
FLS P P R + HPA P L SS+ P L + T PLT
Sbjct: 513 FLSQHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTP-------LPTINTHPLTS 565
Query: 96 HPGH--HHPAPFHSAALLVPVKPPTAWEG 122
P H HHP H ++P P + G
Sbjct: 566 GPHHAVHHP---HLLPTVLPGVPTASLLG 591
>gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 29.6 bits (65), Expect = 0.86
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 33 LPASERRFLSCCPLPARPLLQRLASRHPASL--------PCSQQLLWRSSRAPPLLPSLP 84
L AS F S PARP L R AS PA L S QL +P +LP
Sbjct: 133 LGASATAFRSSSDPPARPRLFRRASASPAQLRLPSRLASALSAQLRLPHPSSPGVLPWRC 192
Query: 85 LGVLITDPLTRHPGHHHPAPFHSA--ALLVPVKPPTAW 120
L + ++D P F +A A P P AW
Sbjct: 193 LSLSVSDLKLPLPPSWPWLGFSAALPAAFRPCSAPPAW 230
>gi|40548408 p30 DBC protein [Homo sapiens]
Length = 923
Score = 29.6 bits (65), Expect = 0.86
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 47 PARPLLQRLA-SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
PA PLL A + L QL+++ R PPL P PL + T T H H + P
Sbjct: 125 PAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSH-TLHLSHLNRFP 182
>gi|24432106 p30 DBC protein [Homo sapiens]
Length = 923
Score = 29.6 bits (65), Expect = 0.86
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 47 PARPLLQRLA-SRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPLTRHPGHHHPAP 104
PA PLL A + L QL+++ R PPL P PL + T T H H + P
Sbjct: 125 PAPPLLHVAALGQKQGILGAQPQLIFQPHRIPPLFPQKPLSLFQTSH-TLHLSHLNRFP 182
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 29.6 bits (65), Expect = 0.86
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 34 PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
PA + LS LP PLL P+S P +L ++ PPLLP++PL P
Sbjct: 748 PALQTPSLSSGQLP--PLL---IPTDPSSPPPCPPVLTVATPPPPLLPTVPLPA----PS 798
Query: 94 TRHPGHHHPAPFHSAALL--VPVKPPTAWEGKSRL--ARPCLSQA 134
+ H P+P +A +P+ PT S + P +S A
Sbjct: 799 SSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAA 843
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 29.6 bits (65), Expect = 0.86
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 34 PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
PA + LS LP PLL P+S P +L ++ PPLLP++PL P
Sbjct: 949 PALQTPSLSSGQLP--PLL---IPTDPSSPPPCPPVLTVATPPPPLLPTVPLPA----PS 999
Query: 94 TRHPGHHHPAPFHSAALL--VPVKPPTAWEGKSRL--ARPCLSQA 134
+ H P+P +A +P+ PT S + P +S A
Sbjct: 1000 SSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAA 1044
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 29.6 bits (65), Expect = 0.86
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 34 PASERRFLSCCPLPARPLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
PA + LS LP PLL P+S P +L ++ PPLLP++PL P
Sbjct: 949 PALQTPSLSSGQLP--PLL---IPTDPSSPPPCPPVLTVATPPPPLLPTVPLPA----PS 999
Query: 94 TRHPGHHHPAPFHSAALL--VPVKPPTAWEGKSRL--ARPCLSQA 134
+ H P+P +A +P+ PT S + P +S A
Sbjct: 1000 SSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAA 1044
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 50 PLLQRLASRHPASLPCSQQLLWRSSRAPPLLPSLPLGVLITDPL 93
PLL +L S HP SL C L + + L LG L+T PL
Sbjct: 1088 PLLTKLGSLHPQSLNCQCLLRALGLGSLQTIELLTLGQLLTYPL 1131
>gi|157688564 diacylglycerol kinase zeta isoform 4 [Homo sapiens]
Length = 1117
Score = 29.3 bits (64), Expect = 1.1
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 14 RRRQSGVTLRGAVVSGGVRLPASERRFLSCCPLPARP--LLQRLASRHPASLPCSQQLLW 71
+RR+S L+G ++S GVR S RR S P P ++ ++ + P ++ QLL
Sbjct: 48 QRRRSSAQLQGCLLSCGVRAQGSSRRRSSTVPPSCNPRFIVDKVLTPQPTTV--GAQLL- 104
Query: 72 RSSRAPPLLPSL 83
AP LL L
Sbjct: 105 ---GAPLLLTGL 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,853,030
Number of Sequences: 37866
Number of extensions: 358331
Number of successful extensions: 1648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 126
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.