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Search of human proteins with 239756197
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756197 PREDICTED: hypothetical protein [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756197 PREDICTED: hypothetical protein [Homo sapiens] 687 0.0
gi|210031154 zinc finger protein 541 [Homo sapiens] 42 6e-04
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 40 0.003
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 40 0.004
gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens] 39 0.005
gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens] 39 0.005
gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo ... 39 0.005
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 39 0.006
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 38 0.011
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 38 0.011
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap... 38 0.014
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 38 0.014
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 37 0.019
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 37 0.019
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 37 0.019
gi|55956910 meningioma 1 [Homo sapiens] 37 0.032
gi|195972905 zinc finger protein 385A isoform b [Homo sapiens] 36 0.042
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 36 0.054
gi|169201810 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|169167808 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|113422123 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|113417039 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|113421705 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|113416520 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 36 0.054
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 35 0.071
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 35 0.071
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 35 0.071
gi|209969812 ankyrin repeat domain 25 [Homo sapiens] 35 0.12
>gi|239756197 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 687 bits (1773), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MRATVAAPGLLVIWEELRGPSEPGFPHLHGLRTPGRGSRARLGQARSCLGAAGLETAGAE 60
MRATVAAPGLLVIWEELRGPSEPGFPHLHGLRTPGRGSRARLGQARSCLGAAGLETAGAE
Sbjct: 1 MRATVAAPGLLVIWEELRGPSEPGFPHLHGLRTPGRGSRARLGQARSCLGAAGLETAGAE 60
Query: 61 GSFRGPGGAEKRRKEVGTDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFF 120
GSFRGPGGAEKRRKEVGTDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFF
Sbjct: 61 GSFRGPGGAEKRRKEVGTDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFF 120
Query: 121 SPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGT 180
SPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGT
Sbjct: 121 SPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGT 180
Query: 181 GIIPRPGGTETLREACAALGEGRQPPLVSAESWEAVGFERRPGELCAEPGGPDLLPRAFR 240
GIIPRPGGTETLREACAALGEGRQPPLVSAESWEAVGFERRPGELCAEPGGPDLLPRAFR
Sbjct: 181 GIIPRPGGTETLREACAALGEGRQPPLVSAESWEAVGFERRPGELCAEPGGPDLLPRAFR 240
Query: 241 SRCPGTRVCPRCAQTRLCREQVSRGTERTERGFWEYMRVLAPGNRAAESTRQGKQEGTGP 300
SRCPGTRVCPRCAQTRLCREQVSRGTERTERGFWEYMRVLAPGNRAAESTRQGKQEGTGP
Sbjct: 241 SRCPGTRVCPRCAQTRLCREQVSRGTERTERGFWEYMRVLAPGNRAAESTRQGKQEGTGP 300
Query: 301 LGGGAGEPGGRRPGGRERRERQGFRLASLAV 331
LGGGAGEPGGRRPGGRERRERQGFRLASLAV
Sbjct: 301 LGGGAGEPGGRRPGGRERRERQGFRLASLAV 331
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 42.4 bits (98), Expect = 6e-04
Identities = 58/212 (27%), Positives = 73/212 (34%), Gaps = 28/212 (13%)
Query: 128 PPRAQSPGFQQPGRRSARR-VSGIRAMRLCSPGSQP-------GTQNLHPGPREYR---- 175
PP A+SPG P R RR VS I + SPG P G P P
Sbjct: 259 PPEARSPGSLLPHRDLLRRIVSSIVHQKTPSPGPAPAGASDSEGRNTACPCPASSGSSSC 318
Query: 176 TPVGTGIIPRPGGTETLREACAALGEGRQPPLVSAESWEAVGFERRPGELCAEPGGPDLL 235
TP G P TE E C E + S A P E EP L
Sbjct: 319 TPAGPHAAPAALDTELPEEPCLPQKEPATDVFTAPNSRAAENGAPDPPE--PEPDTALLQ 376
Query: 236 PRAFRSRCPGTRVCPRCAQTRLCREQVSRGTERTERGFWEYMRVL-----APGNR----- 285
R+ P P C L R Q + + ++++R L + GN
Sbjct: 377 ARSTAECWPEGGSVPACLP--LFRGQTVPASSQPSSHSFQWLRNLPGCPKSKGNNVFVVH 434
Query: 286 --AAESTRQGKQEGTGPLGGGAGEPGGRRPGG 315
+A +R+G + G GP G E PGG
Sbjct: 435 KPSAVPSREGSESGPGPSSGSPSEESPPGPGG 466
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 40.0 bits (92), Expect = 0.003
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 92 KSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQPGRRSARRVSGIR 151
+ + A +Q PPTP G GS+S +F+ PP + Q P R +G
Sbjct: 222 EQKAASGCERLQGPPTPAGKETEGSLS--DSDFKEPPSEGRLDALQGPPRTGGPSPAGPA 279
Query: 152 AMRLC------------SPGSQPGTQNLHPGP 171
A RL +PG P + PGP
Sbjct: 280 AARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 39.7 bits (91), Expect = 0.004
Identities = 64/239 (26%), Positives = 83/239 (34%), Gaps = 48/239 (20%)
Query: 20 PSEPGFPHLHGLRTPGRGSRARLGQARS------------------CL--GAAGLETAGA 59
P +PG P L G PG G + ++G CL G G++
Sbjct: 222 PGQPGRPGLKG--NPGVGVKGQMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPG 279
Query: 60 EGSFRGPGGAEKRRKEVGTDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSF 119
GP G R+ E G K K +PGFP SY P G LG++G
Sbjct: 280 MVGLPGPPG---RKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDPGL 336
Query: 120 F---SPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRT 176
F P + P PG PG V + L P PG + +
Sbjct: 337 FGLIGP--KGDPGNRGHPG--PPG------VLVTPPLPLKGPPGDPGFPGRYGETGDVGP 386
Query: 177 PVGTGIIPRPGGTETLREACAALGEGRQP---PLVSAESWEAVGFERRPGELCAEPGGP 232
P G++ RPG EACA + P P + EA G RP +PG P
Sbjct: 387 PGPPGLLGRPG------EACAGMIGPPGPQGFPGLPGLPGEA-GIPGRPDSAPGKPGKP 438
Score = 32.7 bits (73), Expect = 0.46
Identities = 56/185 (30%), Positives = 72/185 (38%), Gaps = 34/185 (18%)
Query: 8 PGLLVIWE-ELRGP-SEPGFPHLHG----LRTPGR-GSRARLGQARSCLGAAGLETAGAE 60
PG+LV L+GP +PGFP +G + PG G R G+A C G G G +
Sbjct: 355 PGVLVTPPLPLKGPPGDPGFPGRYGETGDVGPPGPPGLLGRPGEA--CAGMIG--PPGPQ 410
Query: 61 GSFRGPGGAEKRRKEVGTDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLG----S 116
G F G G G + PG P K SP PG G+ G S
Sbjct: 411 G-FPGLPGLPGEAGIPGRPDS----APGKPGKPG---------SPGLPGAPGLQGLPGSS 456
Query: 117 VSFFSPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPG--SQPGTQNLHPGPREY 174
V + S NP P+ PG R + G + C PG PG L PG +
Sbjct: 457 VIYCS--VGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGL-PGRQGS 513
Query: 175 RTPVG 179
+ +G
Sbjct: 514 KGDLG 518
>gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens]
Length = 445
Score = 39.3 bits (90), Expect = 0.005
Identities = 51/212 (24%), Positives = 75/212 (35%), Gaps = 14/212 (6%)
Query: 28 LHGLRTPGRGSRARLGQARSCLGAAGLET-AGAEGSFRGPGGAEKRRKEVGTDEKILKCV 86
L GLRTP + R G S ++ G G + P ++ + D+++
Sbjct: 44 LQGLRTPPPPTEPR-GADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVC--- 99
Query: 87 PGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPP--PRAQSPGFQQP-GRRS 143
P K ++ ES P G + + S P P+ SPG P G +
Sbjct: 100 ---PEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMT 156
Query: 144 ARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGEGR 203
+S C+ + G PGP + P+ G PG T L +G
Sbjct: 157 LSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLG---DPGQTAFSVLPLTPLQKGG 213
Query: 204 QPPLVSAESWEAVGFERRPGELCAEPGGPDLL 235
QPP A ER P A+ G D+L
Sbjct: 214 QPPPPGCPEVRATRSEREPTRPPAQVEGEDVL 245
>gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens]
Length = 445
Score = 39.3 bits (90), Expect = 0.005
Identities = 51/212 (24%), Positives = 75/212 (35%), Gaps = 14/212 (6%)
Query: 28 LHGLRTPGRGSRARLGQARSCLGAAGLET-AGAEGSFRGPGGAEKRRKEVGTDEKILKCV 86
L GLRTP + R G S ++ G G + P ++ + D+++
Sbjct: 44 LQGLRTPPPPTEPR-GADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVC--- 99
Query: 87 PGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPP--PRAQSPGFQQP-GRRS 143
P K ++ ES P G + + S P P+ SPG P G +
Sbjct: 100 ---PEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMT 156
Query: 144 ARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGEGR 203
+S C+ + G PGP + P+ G PG T L +G
Sbjct: 157 LSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLG---DPGQTAFSVLPLTPLQKGG 213
Query: 204 QPPLVSAESWEAVGFERRPGELCAEPGGPDLL 235
QPP A ER P A+ G D+L
Sbjct: 214 QPPPPGCPEVRATRSEREPTRPPAQVEGEDVL 245
>gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo
sapiens]
Length = 445
Score = 39.3 bits (90), Expect = 0.005
Identities = 51/212 (24%), Positives = 75/212 (35%), Gaps = 14/212 (6%)
Query: 28 LHGLRTPGRGSRARLGQARSCLGAAGLET-AGAEGSFRGPGGAEKRRKEVGTDEKILKCV 86
L GLRTP + R G S ++ G G + P ++ + D+++
Sbjct: 44 LQGLRTPPPPTEPR-GADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVC--- 99
Query: 87 PGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPP--PRAQSPGFQQP-GRRS 143
P K ++ ES P G + + S P P+ SPG P G +
Sbjct: 100 ---PEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMT 156
Query: 144 ARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGEGR 203
+S C+ + G PGP + P+ G PG T L +G
Sbjct: 157 LSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLG---DPGQTAFSVLPLTPLQKGG 213
Query: 204 QPPLVSAESWEAVGFERRPGELCAEPGGPDLL 235
QPP A ER P A+ G D+L
Sbjct: 214 QPPPPGCPEVRATRSEREPTRPPAQVEGEDVL 245
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 38.9 bits (89), Expect = 0.006
Identities = 96/310 (30%), Positives = 114/310 (36%), Gaps = 38/310 (12%)
Query: 20 PSEPGFPHLHGLRTPG-RGSRARLG-QARSCLGAAGLETAGAEGSFRGPGGAEKRRKEVG 77
P PGFP G+ PG G G S +G AG G G GP G R E G
Sbjct: 91 PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAG--PPGLPGKV-GPPGQPGLRGEPG 147
Query: 78 -TDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGF 136
++ L+ PG P + I P PG GV G P F+ P PG
Sbjct: 148 IRGDQGLRGPPGPPGLPGPS----GITIPGKPGAQGVPG-----PPGFQGEPGPQGEPG- 197
Query: 137 QQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREAC 196
PG R + +G+ L PG+ PG Q PGP P G G +P G + L A
Sbjct: 198 -PPGDRGLKGDNGVGQPGL--PGA-PG-QGGAPGPPGLPGPAGLG---KP-GLDGLPGAP 248
Query: 197 AALGEGRQPPLVSAESWE--AVGFERRPG-ELCAEPGGPDLL----PRAFRSRCPGTRVC 249
GE PP V E AVG + PG + PG L P + PGTR
Sbjct: 249 GDKGES-GPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE-PGTRGP 306
Query: 250 PRCAQTRLCREQVSRGT--ERTERGFWEYMRVLAPGNRAAESTRQGKQEGTGPLG--GGA 305
P G +R G + E QG Q GP G G A
Sbjct: 307 PGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSA 366
Query: 306 GEPGGRRPGG 315
G PG R P G
Sbjct: 367 GLPGRRGPPG 376
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 38.1 bits (87), Expect = 0.011
Identities = 73/267 (27%), Positives = 85/267 (31%), Gaps = 57/267 (21%)
Query: 104 SPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCS--PGSQ 161
S PTP + SP PP R +P P +S RR S R P Q
Sbjct: 133 SHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQ 192
Query: 162 PGTQNLHPGPREYRTPVGT----------GIIPRPGGTETLREAC-----------AALG 200
P Q + P G+ PRP A AA G
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252
Query: 201 EGRQPP-----LVSAESWEAVGFERRPGELCAEPGG---PDLLPRAFRSRCPGTRVCPRC 252
+QPP L SA S A R P L G P L SR P PR
Sbjct: 253 SAQQPPLARLLLASAVSL-AASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRR 311
Query: 253 AQTRLCR----------EQVSRGTE----RTERGFWEYMRVLAPGNRAAESTRQGKQEGT 298
+ R R +SRG E R RG E R RQG G+
Sbjct: 312 CRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEE---------RRVRGRRQGCALGS 362
Query: 299 GPLGGGAGEPG--GRRPGGRERRERQG 323
P+ G PG G R R+ R+R G
Sbjct: 363 PPIPAGPAAPGRAGERRAARQWRKRGG 389
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 38.1 bits (87), Expect = 0.011
Identities = 73/267 (27%), Positives = 85/267 (31%), Gaps = 57/267 (21%)
Query: 104 SPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCS--PGSQ 161
S PTP + SP PP R +P P +S RR S R P Q
Sbjct: 133 SHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQ 192
Query: 162 PGTQNLHPGPREYRTPVGT----------GIIPRPGGTETLREAC-----------AALG 200
P Q + P G+ PRP A AA G
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252
Query: 201 EGRQPP-----LVSAESWEAVGFERRPGELCAEPGG---PDLLPRAFRSRCPGTRVCPRC 252
+QPP L SA S A R P L G P L SR P PR
Sbjct: 253 SAQQPPLARLLLASAVSL-AASLARSPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRR 311
Query: 253 AQTRLCR----------EQVSRGTE----RTERGFWEYMRVLAPGNRAAESTRQGKQEGT 298
+ R R +SRG E R RG E R RQG G+
Sbjct: 312 CRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEE---------RRVRGRRQGCALGS 362
Query: 299 GPLGGGAGEPG--GRRPGGRERRERQG 323
P+ G PG G R R+ R+R G
Sbjct: 363 PPIPAGPAAPGRAGERRAARQWRKRGG 389
>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
sapiens]
Length = 373
Score = 37.7 bits (86), Expect = 0.014
Identities = 58/231 (25%), Positives = 81/231 (35%), Gaps = 31/231 (13%)
Query: 46 RSCLGAAGLETAGAEGSFR----GPGGAEKRRKEVGTD---EKILKCVPGFPYKSRVAE- 97
R+C+ G +T G + R GP A + T K C+ P S A+
Sbjct: 40 RTCILLRGDQTTGGQAPSREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQP 99
Query: 98 ---SYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMR 154
+ E+Q+ P PG L G+ + +P + PP G +QP R G+
Sbjct: 100 LANAVCEVQTVPGPG-LRPQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTG-- 156
Query: 155 LCSPGSQPGTQNLH---PGPREYRTPVGTGIIPRPGGTETLR---EACAALGEGRQPPLV 208
P P + + PG G G RP L E G ++ PL
Sbjct: 157 --GPSPPPPAASRYGQTPGREPRVQAPGLGPCGRPASGRLLSLHLEKGDGKGTRQRIPLT 214
Query: 209 SAESWEAVGFERR--PGELCAEPGGPDLLPRAFRSRCPGTRVCPRCAQTRL 257
A AVG +R P + A GP P PG+ P RL
Sbjct: 215 DA----AVGGDRTDIPSAIAA---GPARTPDRHGLPIPGSTPTPMVGSGRL 258
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 37.7 bits (86), Expect = 0.014
Identities = 58/231 (25%), Positives = 81/231 (35%), Gaps = 31/231 (13%)
Query: 46 RSCLGAAGLETAGAEGSFR----GPGGAEKRRKEVGTD---EKILKCVPGFPYKSRVAE- 97
R+C+ G +T G + R GP A + T K C+ P S A+
Sbjct: 40 RTCILLRGDQTTGGQAPSREISLGPWAAGTHFLAISTTPWGRKTPACISELPTSSGTAQP 99
Query: 98 ---SYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMR 154
+ E+Q+ P PG L G+ + +P + PP G +QP R G+
Sbjct: 100 LANAVCEVQTVPGPG-LRPQGTPAMRAPSHKGTPPTPNPWGPEQPQNRHKHPKKGVTG-- 156
Query: 155 LCSPGSQPGTQNLH---PGPREYRTPVGTGIIPRPGGTETLR---EACAALGEGRQPPLV 208
P P + + PG G G RP L E G ++ PL
Sbjct: 157 --GPSPPPPAASRYGQTPGREPRVQAPGLGPCGRPASGRLLSLHLEKGDGKGTRQRIPLT 214
Query: 209 SAESWEAVGFERR--PGELCAEPGGPDLLPRAFRSRCPGTRVCPRCAQTRL 257
A AVG +R P + A GP P PG+ P RL
Sbjct: 215 DA----AVGGDRTDIPSAIAA---GPARTPDRHGLPIPGSTPTPMVGSGRL 258
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 37.4 bits (85), Expect = 0.019
Identities = 91/371 (24%), Positives = 118/371 (31%), Gaps = 76/371 (20%)
Query: 1 MRATVAAPGLLVIWEELRGPSEPGFPHL---HGLRTP-----GRGSRARLGQ-ARSCLGA 51
++ PGL E+ PGFP L G+ P RGSR G + +G
Sbjct: 1055 LKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQ 1114
Query: 52 AGL---------------------ETAGAEG-----SFRGPGGAEKRRKEVGTDEKILKC 85
GL G EG F GP G + G +
Sbjct: 1115 PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGE-----RG 1169
Query: 86 VPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQ----PGR 141
PG + S F P G LG + P FR PP PG++ PGR
Sbjct: 1170 SPGPKGEKGEPGSIFS----PDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGR 1225
Query: 142 RSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGE 201
++G++ + +PG +L G R P G P P GT A
Sbjct: 1226 PGRPGMNGLKGEK-----GEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESS 1280
Query: 202 GRQPPLVSAESWEAVGFERRPGELCAEPGGPDLLPRAFRSRCPGTRVCPRCAQTRLCREQ 261
PP + G + GE+ PG P P F + + E+
Sbjct: 1281 RPGPPGLPGNQGPP-GPKGAKGEV-GPPGPPGQFPFDFLQ-----------LEAEMKGEK 1327
Query: 262 VSRGT-----ERTERGFWEYMRVLAPGNRAAESTRQGKQEGTGPLG----GGAGEPGGRR 312
RG ER E G + PG R G GP G G G PG +
Sbjct: 1328 GDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPR-GYPGIPGPKGESIRGQPGPPGPQG 1386
Query: 313 PGGRERRERQG 323
P G RQG
Sbjct: 1387 PPGIGYEGRQG 1397
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 37.4 bits (85), Expect = 0.019
Identities = 91/371 (24%), Positives = 118/371 (31%), Gaps = 76/371 (20%)
Query: 1 MRATVAAPGLLVIWEELRGPSEPGFPHL---HGLRTP-----GRGSRARLGQ-ARSCLGA 51
++ PGL E+ PGFP L G+ P RGSR G + +G
Sbjct: 640 LKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQ 699
Query: 52 AGL---------------------ETAGAEG-----SFRGPGGAEKRRKEVGTDEKILKC 85
GL G EG F GP G + G +
Sbjct: 700 PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGE-----RG 754
Query: 86 VPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQ----PGR 141
PG + S F P G LG + P FR PP PG++ PGR
Sbjct: 755 SPGPKGEKGEPGSIFS----PDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGR 810
Query: 142 RSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGE 201
++G++ + +PG +L G R P G P P GT A
Sbjct: 811 PGRPGMNGLKGEK-----GEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESS 865
Query: 202 GRQPPLVSAESWEAVGFERRPGELCAEPGGPDLLPRAFRSRCPGTRVCPRCAQTRLCREQ 261
PP + G + GE+ PG P P F + + E+
Sbjct: 866 RPGPPGLPGNQGPP-GPKGAKGEV-GPPGPPGQFPFDFLQ-----------LEAEMKGEK 912
Query: 262 VSRGT-----ERTERGFWEYMRVLAPGNRAAESTRQGKQEGTGPLG----GGAGEPGGRR 312
RG ER E G + PG R G GP G G G PG +
Sbjct: 913 GDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPR-GYPGIPGPKGESIRGQPGPPGPQG 971
Query: 313 PGGRERRERQG 323
P G RQG
Sbjct: 972 PPGIGYEGRQG 982
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 37.4 bits (85), Expect = 0.019
Identities = 91/371 (24%), Positives = 118/371 (31%), Gaps = 76/371 (20%)
Query: 1 MRATVAAPGLLVIWEELRGPSEPGFPHL---HGLRTP-----GRGSRARLGQ-ARSCLGA 51
++ PGL E+ PGFP L G+ P RGSR G + +G
Sbjct: 820 LKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQ 879
Query: 52 AGL---------------------ETAGAEG-----SFRGPGGAEKRRKEVGTDEKILKC 85
GL G EG F GP G + G +
Sbjct: 880 PGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGE-----RG 934
Query: 86 VPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQ----PGR 141
PG + S F P G LG + P FR PP PG++ PGR
Sbjct: 935 SPGPKGEKGEPGSIFS----PDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGR 990
Query: 142 RSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGE 201
++G++ + +PG +L G R P G P P GT A
Sbjct: 991 PGRPGMNGLKGEK-----GEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESS 1045
Query: 202 GRQPPLVSAESWEAVGFERRPGELCAEPGGPDLLPRAFRSRCPGTRVCPRCAQTRLCREQ 261
PP + G + GE+ PG P P F + + E+
Sbjct: 1046 RPGPPGLPGNQGPP-GPKGAKGEV-GPPGPPGQFPFDFLQ-----------LEAEMKGEK 1092
Query: 262 VSRGT-----ERTERGFWEYMRVLAPGNRAAESTRQGKQEGTGPLG----GGAGEPGGRR 312
RG ER E G + PG R G GP G G G PG +
Sbjct: 1093 GDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPR-GYPGIPGPKGESIRGQPGPPGPQG 1151
Query: 313 PGGRERRERQG 323
P G RQG
Sbjct: 1152 PPGIGYEGRQG 1162
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 36.6 bits (83), Expect = 0.032
Identities = 45/156 (28%), Positives = 61/156 (39%), Gaps = 28/156 (17%)
Query: 18 RGPSE-----PGFPHLHGLRTPGR---GSRARLGQARSCLGAAGLETAGAEGSFRGPGGA 69
RGP + PG H+ L +PG GS LGQ +S GL +A +E R P
Sbjct: 677 RGPLQEPMRMPGEGHVPALPSPGLQFGGSLGGLGQLQSPGAGVGLPSAASE---RRPPPP 733
Query: 70 EKRRKEVGTDEKILKCVPGFPY----KSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFR 125
+ +G PGFP+ + S + SPP+ GG G GS
Sbjct: 734 DFATSALGGQ-------PGFPFGAAGRQSTPHSGPGVNSPPSAGGGG--GSSGGGGGGGA 784
Query: 126 NPPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQ 161
PP P FQ R SA ++ + P S+
Sbjct: 785 YPP----QPDFQPSQRTSASKLGALSLGSFNKPSSK 816
Score = 30.0 bits (66), Expect = 3.0
Identities = 46/174 (26%), Positives = 59/174 (33%), Gaps = 29/174 (16%)
Query: 9 GLLVIWEELRGPSEPGFPHLHGLRTPGRGSRARLGQARSCLGAAGLETAGAEGSFRGPGG 68
G LV + G ++P F R G RLG E+A G PG
Sbjct: 587 GGLVHGGPVGGLAQPNFE-----REGGSTGAGRLGTFEQQAPHLAQESAWFSGPHPPPGD 641
Query: 69 AEKRRKEVGTDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSP--EFRN 126
RR +G C P P + PP PGG GVL F P E
Sbjct: 642 LLPRR--MGGSGLPADCGPHDP----------SLAPPPPPGGSGVL----FRGPLQEPMR 685
Query: 127 PPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPG----TQNLHPGPREYRT 176
P P PG + + G+ +L SPG+ G P P ++ T
Sbjct: 686 MPGEGHVPALPSPGLQFGGSLGGLG--QLQSPGAGVGLPSAASERRPPPPDFAT 737
>gi|195972905 zinc finger protein 385A isoform b [Homo sapiens]
Length = 305
Score = 36.2 bits (82), Expect = 0.042
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 140 GRRSARRVSGIRAMRLCSPGSQPGTQNL-HPGPREYRTPVGTGIIPRPGGT-ETLREACA 197
G R ARRV GI A + + G +PG + P P G G+ PRPG +T+ EA +
Sbjct: 95 GNRHARRVKGIEAAK--TRGREPGVREPGDPAPPGSTPTNGDGVAPRPGTKHKTILEARS 152
Query: 198 ALG 200
LG
Sbjct: 153 GLG 155
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 35.8 bits (81), Expect = 0.054
Identities = 55/209 (26%), Positives = 72/209 (34%), Gaps = 47/209 (22%)
Query: 20 PSEPGFPHLHGLRTPGRGSRARLGQARSCLGAAGLETAGAEGSFRGPGGAEKRRKEVGTD 79
P EPG+P L G + P +G + G G G +G RG G R E G
Sbjct: 304 PGEPGYPGLIGRQGP-QGEKGEAGPPGPPGIVIGTGPLGEKGE-RGYPGTPGPRGEPGP- 360
Query: 80 EKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQP 139
K PG P P P GL V P +A +PGF P
Sbjct: 361 ----KGFPGLP-------------GQPGPPGLPV--------------PGQAGAPGF--P 387
Query: 140 GRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAAL 199
G R + G L P + G PGP P G +PG T + E
Sbjct: 388 GERGEKGDRGFPGTSLPGPSGRDGL----PGP-----PGSPGPPGQPGYTNGIVECQPGP 438
Query: 200 GEGRQPPLVSAESW--EAVGFERRPGELC 226
+ PP + + +G + + GE C
Sbjct: 439 PGDQGPPGIPGQPGFIGEIGEKGQKGESC 467
Score = 31.2 bits (69), Expect = 1.3
Identities = 49/200 (24%), Positives = 62/200 (31%), Gaps = 50/200 (25%)
Query: 20 PSEPGFPHLHGLRT-PGRGSRARLGQARSCLGAAGLETAGAEG----------------- 61
P PGFP G R PG R L + +G G+ G G
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDMGPPGTP 713
Query: 62 ---SFRG-PG--GAEKRRKEVGTDEKILKCVPGFP-------YKSRVAESYF-------- 100
F G PG G + ++ E G LK +PG P K +
Sbjct: 714 GRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIG 773
Query: 101 ---------EIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQ-QPGRRSARRVSGI 150
E P PG +G G P R PP PG PG + + G
Sbjct: 774 PPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGF 833
Query: 151 RAMRLCSPGSQPGTQNLHPG 170
+ + P G Q L PG
Sbjct: 834 PGLDMPGPKGDKGAQGL-PG 852
>gi|169201810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 35.8 bits (81), Expect = 0.054
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 128 PPRAQSPGFQQPGRRS--ARRVSGIRAMR-LCSPGSQPGTQNLHPGPREYRTPVGTGIIP 184
P R + F+ R S +RR +G R L SPG Q GP E
Sbjct: 42 PLRFRLNEFRAERRESCVSRRAAGPSVPRSLASPGGLAQGQESQRGPTESA--------- 92
Query: 185 RPG--GTETLREACAALGEGRQPP--LVSAESWEAVGFERRPGELCAEPGGPDLLPRAFR 240
RPG E LRE + + E ++PP + W+ R C P PRA
Sbjct: 93 RPGQPAAEQLREQASGIREAQRPPPGRPRPQRWDCTYL--RNVLFCMSPRRAGQGPRAAG 150
Query: 241 SRCPGTRVCPRCAQTRLCRE 260
R P PR + +R C E
Sbjct: 151 LRAPACMCSPRQSVSRKCSE 170
>gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.8 bits (81), Expect = 0.054
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 20/177 (11%)
Query: 25 FPHLHGLRTPGRGSRA--RLGQARSCLGAAGLETAGAEGSFRGPGGAEKRRKEVGTDEKI 82
FP HG R + RA R G +R+ G +G+ T A+GS + R V +
Sbjct: 9 FPAQHGARPSEKPPRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRT 68
Query: 83 LKCVPGFPYKSRVAESYFEIQSPPTPGGLG-VLGSVSFFSPEFRNPPPRAQSPGFQQPGR 141
+ PG Y+S S P PGG G G + P + +++PG+
Sbjct: 69 CRGGPGRGYESAAGNSL-----PSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGK 123
Query: 142 RSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGG--TETLREAC 196
+ + + R RL +P + L P PR + GT R G T+T +E C
Sbjct: 124 ETWKPKT--RRPRLRAPRA----ALLLPRPRTHGPAGGT----RGGNLDTDTQKEHC 170
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 35.8 bits (81), Expect = 0.054
Identities = 47/169 (27%), Positives = 60/169 (35%), Gaps = 26/169 (15%)
Query: 181 GIIPRPGGTET--LREACAALGEGRQPP------LVSAESWEAVGFERRPGELCAEP--- 229
G+ P GG E L A A G+G++PP A + G RP E P
Sbjct: 20 GVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAA 79
Query: 230 -----GGPDLLPRAFRS-----RCPGTRVCPRCAQT---RLCREQV-SRGTERTE-RGFW 274
GPD RA R+ + P R CA + R CR+ S G + R W
Sbjct: 80 RGGARAGPDAQLRAARTHRARAQTPQLRREAACAGSFFFRKCRQSPRSHGQPFPQLRSHW 139
Query: 275 EYMRVLAPGNRAAESTRQGKQEGTGPLGGGAGEPGGRRPGGRERRERQG 323
+ R P ++E GGG GRR G QG
Sbjct: 140 QAPRQGWPAQEGGGRRPSRREEAAALAGGGKRTAPGRRGRGGRAAAGQG 188
>gi|113422123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 35.8 bits (81), Expect = 0.054
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 128 PPRAQSPGFQQPGRRS--ARRVSGIRAMR-LCSPGSQPGTQNLHPGPREYRTPVGTGIIP 184
P R + F+ R S +RR +G R L SPG Q GP E
Sbjct: 42 PLRFRLNEFRAERRESCVSRRAAGPSVPRSLASPGGLAQGQESQRGPTESA--------- 92
Query: 185 RPG--GTETLREACAALGEGRQPP--LVSAESWEAVGFERRPGELCAEPGGPDLLPRAFR 240
RPG E LRE + + E ++PP + W+ R C P PRA
Sbjct: 93 RPGQPAAEQLREQASGIREAQRPPPGRPRPQRWDCTYL--RNVLFCMSPRRAGQGPRAAG 150
Query: 241 SRCPGTRVCPRCAQTRLCRE 260
R P PR + +R C E
Sbjct: 151 LRAPACMCSPRQSVSRKCSE 170
>gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.8 bits (81), Expect = 0.054
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 20/177 (11%)
Query: 25 FPHLHGLRTPGRGSRA--RLGQARSCLGAAGLETAGAEGSFRGPGGAEKRRKEVGTDEKI 82
FP HG R + RA R G +R+ G +G+ T A+GS + R V +
Sbjct: 9 FPAQHGARPSEKPPRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRT 68
Query: 83 LKCVPGFPYKSRVAESYFEIQSPPTPGGLG-VLGSVSFFSPEFRNPPPRAQSPGFQQPGR 141
+ PG Y+S S P PGG G G + P + +++PG+
Sbjct: 69 CRGGPGRGYESAAGNSL-----PSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGK 123
Query: 142 RSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGG--TETLREAC 196
+ + + R RL +P + L P PR + GT R G T+T +E C
Sbjct: 124 ETWKPKT--RRPRLRAPRA----ALLLPRPRTHGPAGGT----RGGNLDTDTQKEHC 170
>gi|113421705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 35.8 bits (81), Expect = 0.054
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 128 PPRAQSPGFQQPGRRS--ARRVSGIRAMR-LCSPGSQPGTQNLHPGPREYRTPVGTGIIP 184
P R + F+ R S +RR +G R L SPG Q GP E
Sbjct: 42 PLRFRLNEFRAERRESCVSRRAAGPSVPRSLASPGGLAQGQESQRGPTESA--------- 92
Query: 185 RPG--GTETLREACAALGEGRQPP--LVSAESWEAVGFERRPGELCAEPGGPDLLPRAFR 240
RPG E LRE + + E ++PP + W+ R C P PRA
Sbjct: 93 RPGQPAAEQLREQASGIREAQRPPPGRPRPQRWDCTYL--RNVLFCMSPRRAGQGPRAAG 150
Query: 241 SRCPGTRVCPRCAQTRLCRE 260
R P PR + +R C E
Sbjct: 151 LRAPACMCSPRQSVSRKCSE 170
>gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.8 bits (81), Expect = 0.054
Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 20/177 (11%)
Query: 25 FPHLHGLRTPGRGSRA--RLGQARSCLGAAGLETAGAEGSFRGPGGAEKRRKEVGTDEKI 82
FP HG R + RA R G +R+ G +G+ T A+GS + R V +
Sbjct: 9 FPAQHGARPSEKPPRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRT 68
Query: 83 LKCVPGFPYKSRVAESYFEIQSPPTPGGLG-VLGSVSFFSPEFRNPPPRAQSPGFQQPGR 141
+ PG Y+S S P PGG G G + P + +++PG+
Sbjct: 69 CRGGPGRGYESAAGNSL-----PSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGK 123
Query: 142 RSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGG--TETLREAC 196
+ + + R RL +P + L P PR + GT R G T+T +E C
Sbjct: 124 ETWKPKT--RRPRLRAPRA----ALLLPRPRTHGPAGGT----RGGNLDTDTQKEHC 170
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 35.8 bits (81), Expect = 0.054
Identities = 81/301 (26%), Positives = 107/301 (35%), Gaps = 59/301 (19%)
Query: 10 LLVIWEELRGPSEPGFPHLHGLRTPGRGSRARLGQARSCLGAAGLETAGAEGSFRGPGGA 69
LL EE RG + H GL +L AR+ GL + AEG +G A
Sbjct: 1366 LLGSLEEARGTEKQQLDHARGLEL-------KLEAARAEAAELGLRLSAAEGRAQGL-EA 1417
Query: 70 EKRRKEVGTDEKILKCVPGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPPP 129
E R EV + R AE+ GLG LG SP P P
Sbjct: 1418 ELARVEV---------------QRRAAEAQLGGLRSALRRGLG-LGRAP--SPA---PRP 1456
Query: 130 RAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIP---RP 186
SP P S ++ + CSPGSQP P P +P + P R
Sbjct: 1457 VPGSPARDAPAEGSGEGLNSPSTLE-CSPGSQP------PSPGPATSPASPDLDPEAVRG 1509
Query: 187 GGTETLREACAALGE-----------GRQPPLVSAESWEAVGFERRPGELCAEPGGPDLL 235
E L+E +A E RQ + AE A R+ + AE +
Sbjct: 1510 ALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAE---SEEA 1566
Query: 236 PRAFRSRCPGTRVCPRCAQTRLCREQVSRGTERTERGFWEYMRVLAPGNRAAESTRQGKQ 295
R+ R G + A+ L E V R +ER R + + L +A ES + Q
Sbjct: 1567 RRSVDGRLSGVQ-----AELALQEESVRR-SERERRATLDQVATLERSLQATESELRASQ 1620
Query: 296 E 296
E
Sbjct: 1621 E 1621
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 35.4 bits (80), Expect = 0.071
Identities = 45/148 (30%), Positives = 56/148 (37%), Gaps = 9/148 (6%)
Query: 127 PPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRP 186
P PR + G +Q R R+ G P +P L GP P GT P
Sbjct: 128 PAPRPKRFGGKQ---RPLWRIRGWETTVARLP--EPRVGKLGKGPPPRPAPPGTRCCPGA 182
Query: 187 GGTETLREACAALGEGRQPPLVSAESWEAVGFERRPGEL-CAEPGGPDLLPRAFRSRCPG 245
+ LREA AA R P E RPG L A D L R+ R+ P
Sbjct: 183 RAAQLLREAAAAAQGLRAPAARLPEPTRRA--PGRPGCLPTAAAAAADALWRSRRAPLPP 240
Query: 246 TR-VCPRCAQTRLCREQVSRGTERTERG 272
T + PR + R E+ R +R E G
Sbjct: 241 TEFLSPRRTRPRKHPERTRRPAQRLESG 268
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 35.4 bits (80), Expect = 0.071
Identities = 45/148 (30%), Positives = 56/148 (37%), Gaps = 9/148 (6%)
Query: 127 PPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRP 186
P PR + G +Q R R+ G P +P L GP P GT P
Sbjct: 128 PAPRPKRFGGKQ---RPLWRIRGWETTVARLP--EPRVGKLGKGPPPRPAPPGTRCCPGA 182
Query: 187 GGTETLREACAALGEGRQPPLVSAESWEAVGFERRPGEL-CAEPGGPDLLPRAFRSRCPG 245
+ LREA AA R P E RPG L A D L R+ R+ P
Sbjct: 183 RAAQLLREAAAAAQGLRAPAARLPEPTRRA--PGRPGCLPTAAAAAADALWRSRRAPLPP 240
Query: 246 TR-VCPRCAQTRLCREQVSRGTERTERG 272
T + PR + R E+ R +R E G
Sbjct: 241 TEFLSPRRTRPRKHPERTRRPAQRLESG 268
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 35.4 bits (80), Expect = 0.071
Identities = 45/148 (30%), Positives = 56/148 (37%), Gaps = 9/148 (6%)
Query: 127 PPPRAQSPGFQQPGRRSARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRP 186
P PR + G +Q R R+ G P +P L GP P GT P
Sbjct: 128 PAPRPKRFGGKQ---RPLWRIRGWETTVARLP--EPRVGKLGKGPPPRPAPPGTRCCPGA 182
Query: 187 GGTETLREACAALGEGRQPPLVSAESWEAVGFERRPGEL-CAEPGGPDLLPRAFRSRCPG 245
+ LREA AA R P E RPG L A D L R+ R+ P
Sbjct: 183 RAAQLLREAAAAAQGLRAPAARLPEPTRRA--PGRPGCLPTAAAAAADALWRSRRAPLPP 240
Query: 246 TR-VCPRCAQTRLCREQVSRGTERTERG 272
T + PR + R E+ R +R E G
Sbjct: 241 TEFLSPRRTRPRKHPERTRRPAQRLESG 268
>gi|209969812 ankyrin repeat domain 25 [Homo sapiens]
Length = 851
Score = 34.7 bits (78), Expect = 0.12
Identities = 48/177 (27%), Positives = 61/177 (34%), Gaps = 18/177 (10%)
Query: 46 RSCLGAAGLETAGAEGSFRGPGG-------AEKRRKEVGTDEKILKCVPGFPYKSRVAES 98
RSC GAAGL AE S PG EK V T E P +R A S
Sbjct: 410 RSCDGAAGLPEVPAESSSSPPGSEVASLTQPEKSTGRVPTQE------PTHREPTRQAAS 463
Query: 99 YFEIQSPPTPGGLGVLGSVSFFSPEFRNPPPRAQSPGFQQPGRRSARRVSGIRAMRLCSP 158
++ T G + S+ E +P +S Q G S + +
Sbjct: 464 QESEEAGGTGGPPAGVRSIMKRKEEVADPTAHRRS--LQFVGVNGGYESSSEDSSTAENI 521
Query: 159 GSQPGTQNLHPGPREYRTPVGTGIIPRPGGT---ETLREACAALGEGRQPPLVSAES 212
T+N P PRE V RP GT +T R+ C E + P S
Sbjct: 522 SDNDSTENEAPEPRERVPSVAEAPQLRPAGTAAAKTSRQECQLSRESQHIPTAEGAS 578
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,680,771
Number of Sequences: 37866
Number of extensions: 1187491
Number of successful extensions: 5832
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 5514
Number of HSP's gapped (non-prelim): 511
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.