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Search of human proteins with 239756172
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756172 PREDICTED: hypothetical protein [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756172 PREDICTED: hypothetical protein [Homo sapiens] 251 7e-68
gi|239750674 PREDICTED: hypothetical protein [Homo sapiens] 251 7e-68
gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo ... 251 7e-68
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa... 32 0.090
gi|4758696 mitogen-activated protein kinase kinase kinase 13 [Ho... 31 0.20
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens] 30 0.58
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s... 30 0.58
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 29 0.76
gi|239757169 PREDICTED: hypothetical protein [Homo sapiens] 29 0.76
gi|239753602 PREDICTED: hypothetical protein [Homo sapiens] 29 0.76
gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo ... 29 0.76
gi|239748177 PREDICTED: hypothetical protein XP_002346568 [Homo ... 29 0.76
gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo ... 29 0.76
gi|239742067 PREDICTED: hypothetical protein XP_002342405 [Homo ... 29 0.76
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 29 0.76
gi|18677735 proline-rich coiled-coil 1 [Homo sapiens] 29 0.76
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 29 1.00
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 29 1.00
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 28 1.3
gi|239755190 PREDICTED: hypothetical protein [Homo sapiens] 28 1.3
gi|239753550 PREDICTED: hypothetical protein XP_002345694 [Homo ... 28 1.3
gi|239749686 PREDICTED: hypothetical protein [Homo sapiens] 28 1.3
gi|239748112 PREDICTED: hypothetical protein [Homo sapiens] 28 1.3
gi|239743954 PREDICTED: hypothetical protein XP_002344279 [Homo ... 28 1.3
gi|81295809 pericentrin [Homo sapiens] 28 1.3
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 28 1.3
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 28 1.7
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 28 1.7
gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo ... 28 1.7
gi|221316586 BSD domain containing 1 isoform d [Homo sapiens] 28 1.7
>gi|239756172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 251 bits (642), Expect = 7e-68
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT 60
MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT
Sbjct: 1 MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT 60
Query: 61 LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL 120
LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL
Sbjct: 61 LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL 120
Query: 121 TI 122
TI
Sbjct: 121 TI 122
>gi|239750674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 251 bits (642), Expect = 7e-68
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT 60
MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT
Sbjct: 1 MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT 60
Query: 61 LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL 120
LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL
Sbjct: 61 LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL 120
Query: 121 TI 122
TI
Sbjct: 121 TI 122
>gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo
sapiens]
Length = 122
Score = 251 bits (642), Expect = 7e-68
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT 60
MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT
Sbjct: 1 MAAVESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT 60
Query: 61 LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL 120
LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL
Sbjct: 61 LRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKRETCPSAHLESTALIRRHPPQREQPRPL 120
Query: 121 TI 122
TI
Sbjct: 121 TI 122
>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
sapiens]
Length = 669
Score = 32.3 bits (72), Expect = 0.090
Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 13 VPNSLFPSP-----PSNPLLGGHC----GRPTKGPAASPAKSGRSRPTILRVQEMKTLRL 63
+P L P+P P P++G GRP G A P G PT R Q+ LR
Sbjct: 7 LPVPLEPAPEAATAPQAPVMGSVSSLISGRPCPGGPAPPRHHGPPGPTFFRQQD-GLLRG 65
Query: 64 AGTGAQPLCKNDPNSDRPFTSVPLKQY--------AKRETCPSAHLESTALIRRHPPQRE 115
+PLC P P +VP+ + + PS+ +E R H
Sbjct: 66 GYEAQEPLCPAVP----PRKAVPVTSFTYINEDFRTESPPSPSSDVEDAREQRAHNAHLR 121
Query: 116 QPRPLTI 122
P P I
Sbjct: 122 GPPPKLI 128
>gi|4758696 mitogen-activated protein kinase kinase kinase 13 [Homo
sapiens]
Length = 966
Score = 31.2 bits (69), Expect = 0.20
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 7 KAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRS--RPTILRVQEMKTLRLA 64
+A E + P + + P P++ + P KSG RP +LR + + T +A
Sbjct: 505 QAVEKKYPGT-YKRHPVRPIIHPNAMEKLMKRKGVPHKSGMQTKRPDLLRSEGIPTTEVA 563
Query: 65 GTGAQPLCKNDPNSDRPFTSVPLKQYA-----KRETCPSAHLESTALIRRHPPQREQPRP 119
T A PL S + TS +Y +R +H + A+++ P Q P P
Sbjct: 564 PT-ASPLS----GSPKMSTSSSKSRYRSKPRHRRGNSRGSHSDFAAILKNQPAQENSPHP 618
>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 0.58
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 33 RPTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQ 69
RP PAASP G SRP R Q + R G GA+
Sbjct: 248 RPQPAPAASPGAPGPSRPA-ARAQPAQRARGPGVGAR 283
>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 0.58
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 33 RPTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQ 69
RP PAASP G SRP R Q + R G GA+
Sbjct: 248 RPQPAPAASPGAPGPSRPA-ARAQPAQRARGPGVGAR 283
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 29.3 bits (64), Expect = 0.76
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 12 RVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKTL 61
R+P + FP P+ G +GPAA P GR RP + E + L
Sbjct: 112 RLPRARFPGGPAAAAWAGDEAW-RRGPAAPPGDKGRLRPAAAGLPEARKL 160
>gi|239757169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 849
Score = 29.3 bits (64), Expect = 0.76
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 34 PTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQPLCKNDPNSD-RPFTSVPLKQYAK 92
P GP A SG PT +R++ + + GT ++P D P TS PL
Sbjct: 500 PHPGPIAPGTSSGTPNPTQIRLRGRERDSVPGTPMWACISSEPGLDSSPQTSRPL----- 554
Query: 93 RETCPS-AHLESTALIRRHP 111
CP+ IR HP
Sbjct: 555 -PACPTVGTFGDDPAIREHP 573
>gi|239753602 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 29.3 bits (64), Expect = 0.76
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKTLRLA 64
+ K ++P S P PP PL H G T AA+ A + S + +T R
Sbjct: 7 QKKTLFQKLPPSPLPLPPQPPLQPEHPGAAT--AAAAAAATATSAASTASTSPPRTPRHP 64
Query: 65 GTGAQPLCKNDPNSDRPFTSV 85
G Q C P +PF SV
Sbjct: 65 GRERQ-CCLLAPPLPQPFPSV 84
>gi|239751681 PREDICTED: hypothetical protein XP_002347965 [Homo
sapiens]
Length = 849
Score = 29.3 bits (64), Expect = 0.76
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 34 PTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQPLCKNDPNSD-RPFTSVPLKQYAK 92
P GP A SG PT +R++ + + GT ++P D P TS PL
Sbjct: 500 PHPGPIAPGTSSGTPNPTQIRLRGRERDSVPGTPMWACISSEPGLDSSPQTSRPL----- 554
Query: 93 RETCPS-AHLESTALIRRHP 111
CP+ IR HP
Sbjct: 555 -PACPTVGTFGDDPAIREHP 573
>gi|239748177 PREDICTED: hypothetical protein XP_002346568 [Homo
sapiens]
Length = 214
Score = 29.3 bits (64), Expect = 0.76
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKTLRLA 64
+ K ++P S P PP PL H G T AA+ A + S + +T R
Sbjct: 7 QKKTLFQKLPPSPLPLPPQPPLQPEHPGAAT--AAAAAAATATSAASTASTSPPRTPRHP 64
Query: 65 GTGAQPLCKNDPNSDRPFTSV 85
G Q C P +PF SV
Sbjct: 65 GRERQ-CCLLAPPLPQPFPSV 84
>gi|239746185 PREDICTED: hypothetical protein XP_002343659 [Homo
sapiens]
Length = 977
Score = 29.3 bits (64), Expect = 0.76
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 34 PTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQPLCKNDPNSD-RPFTSVPLKQYAK 92
P GP A SG PT +R++ + + GT ++P D P TS PL
Sbjct: 500 PHPGPIAPGTSSGTPNPTQIRLRGRERDSVPGTPMWACISSEPGLDSSPQTSRPL----- 554
Query: 93 RETCPS-AHLESTALIRRHP 111
CP+ IR HP
Sbjct: 555 -PACPTVGTFGDDPAIREHP 573
>gi|239742067 PREDICTED: hypothetical protein XP_002342405 [Homo
sapiens]
Length = 214
Score = 29.3 bits (64), Expect = 0.76
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKTLRLA 64
+ K ++P S P PP PL H G T AA+ A + S + +T R
Sbjct: 7 QKKTLFQKLPPSPLPLPPQPPLQPEHPGAAT--AAAAAAATATSAASTASTSPPRTPRHP 64
Query: 65 GTGAQPLCKNDPNSDRPFTSV 85
G Q C P +PF SV
Sbjct: 65 GRERQ-CCLLAPPLPQPFPSV 84
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 29.3 bits (64), Expect = 0.76
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 14 PNSLFPSPPSNPLLGGHCG-----RPTKGPAAS-PAKSGRSRPTILRVQEMKTLRLAGTG 67
P LFP+PP P G G R GPAA + S P L Q RL TG
Sbjct: 132 PRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQ----TRLGRTG 187
Query: 68 AQPLC 72
LC
Sbjct: 188 PLALC 192
>gi|18677735 proline-rich coiled-coil 1 [Homo sapiens]
Length = 445
Score = 29.3 bits (64), Expect = 0.76
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 17/70 (24%)
Query: 14 PNSLFPSPPSNP------------LLGGHCGRPTKGPA----ASPAKSGRSRPTILRVQE 57
PN+L P+PPS P + GH GR + P ++P+ +G PT + Q
Sbjct: 117 PNTLLPAPPSGPPISGFSVGSTYDITRGHAGRAPQTPLMPSFSAPSGTG-LLPTPITQQA 175
Query: 58 MKTLRLAGTG 67
T GTG
Sbjct: 176 SLTSLAQGTG 185
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 28.9 bits (63), Expect = 1.00
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 34 PTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQPLCKNDPNSDRPFTSVPLKQYAKR 93
P AA P +SR R E K + +G QP P P+ S K++ R
Sbjct: 505 PAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPA---PPAPASPWDS---KKHRSR 558
Query: 94 ETCPSAHLESTALIRRHPPQREQPR 118
+ P +H S+A RR R + R
Sbjct: 559 DRKPGSHASSSA--RRRSRSRSRSR 581
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 28.9 bits (63), Expect = 1.00
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 21 PPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQPLCKNDPNSDR 80
PP+ P G G +G +SP +GRSRP R + ++ L + P+ R
Sbjct: 1138 PPTRPSRGEELGG-AEGDTSSPDPAGRSRPRYTRDSKAYSMILLPAEEEATLGARPDKRR 1196
Query: 81 PFTSVPLKQYAKRETCPSAHLESTALIRR 109
P + + E PS +++R
Sbjct: 1197 PL------ERGETELAPSFEQRVQVMLQR 1219
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 19 PSPPSNPLLGGHCGRP----TKGPAASPAKSGRSRP 50
P PP P GH G P +GP P ++G S P
Sbjct: 179 PGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGP 214
>gi|239755190 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53
ES + +PN +P + G C GP +PA+ G+ R L
Sbjct: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90
>gi|239753550 PREDICTED: hypothetical protein XP_002345694 [Homo
sapiens]
Length = 199
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 10 ELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTI---LRVQEMKTLR 62
E R+ S FP P ++ LL GHC P A PA + P R +E TLR
Sbjct: 130 EKRLRQSHFPDPQASWLLEGHCSFLL--PPAVPASTSSPHPCTHRHTRGEESGTLR 183
>gi|239749686 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53
ES + +PN +P + G C GP +PA+ G+ R L
Sbjct: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90
>gi|239748112 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 10 ELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTI---LRVQEMKTLR 62
E R+ S FP P ++ LL GHC P A PA + P R +E TLR
Sbjct: 130 EKRLRQSHFPDPQASWLLEGHCSFLL--PPAVPASTSSPHPCTHRHTRGEESGTLR 183
>gi|239743954 PREDICTED: hypothetical protein XP_002344279 [Homo
sapiens]
Length = 98
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53
ES + +PN +P + G C GP +PA+ G+ R L
Sbjct: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 7 KAAELRVPNSLFPSPPSNPLLGGHCGRPTKG----PAASPAKSGRSRPT 51
+A + + P SPP+ + GH P +G AASP GR+ P+
Sbjct: 3236 RARQPQSPPRTRESPPTRDVPSGHTRDPARGRRLAAAASPHSGGRATPS 3284
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 28.5 bits (62), Expect = 1.3
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 18 FPSPPSNPLLGGHCG----------RPTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTG 67
FP P+ P+ G G +P P A P S P R AG+
Sbjct: 1595 FPPEPA-PVNAGKAGPSAEAPKVHPKPNSAPVAGPCSSFPKIPYSPVKATRADARKAGSS 1653
Query: 68 AQPLCKNDPNSDRPFTSVPLKQYA 91
A P P S RP +S PL + A
Sbjct: 1654 ASPPAPYSPPSSRPLSS-PLDELA 1676
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 28.1 bits (61), Expect = 1.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 19 PSP---PSNPLLGGHCG-----RPTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTG 67
PSP P+ P +GG C RP++ S A+ R RP++ + + G G
Sbjct: 135 PSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAG 191
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 28.1 bits (61), Expect = 1.7
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 14 PNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTGAQPLCK 73
P+S +P P +P G P PA PAK P R + G P +
Sbjct: 324 PSSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPGDSPASKRPRP--------GGVSPEAR 375
Query: 74 NDPNSDRPFTS 84
+ P + P S
Sbjct: 376 DPPKGENPLCS 386
>gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo
sapiens]
Length = 894
Score = 28.1 bits (61), Expect = 1.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 19 PSP---PSNPLLGGHCG-----RPTKGPAASPAKSGRSRPTILRVQEMKTLRLAGTG 67
PSP P+ P +GG C RP++ S A+ R RP++ + + G G
Sbjct: 135 PSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAG 191
>gi|221316586 BSD domain containing 1 isoform d [Homo sapiens]
Length = 335
Score = 28.1 bits (61), Expect = 1.7
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 19 PSPP--SNPLL-GGHCGRPTKGPAASPAKSGRSRPTILRVQEMKT 60
PSPP S PL GH G P P A PT LRV E+ +
Sbjct: 233 PSPPIHSKPLTPAGHTGGPEPRPPARVETLREEAPTDLRVFELNS 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,204,502
Number of Sequences: 37866
Number of extensions: 319845
Number of successful extensions: 1172
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 130
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.