Guide to the Human Genome
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Name: LOC100292280 Sequence: fasta or formatted (849aa) NCBI GI: 239757169
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         66           3
 C cysteine            2.2         19           2
 D aspartate           4.0         34           2
 E glutamate           4.7         40           2
 F phenylalanine       2.1         18           2
 G glycine             8.5         72           5
 H histidine           2.7         23           1
 I isoleucine          3.7         31           2
 K lysine              3.2         27           1
 L leucine             8.6         73           3
 M methionine          1.1          9           1
 N asparagine          2.4         20           1
 P proline             9.9         84           3
 Q glutamine           6.7         57           2
 R arginine            8.0         68           3
 S serine              9.5         81           3
 T threonine           6.0         51           2
 V valine              5.5         47           2
 W tryptophan          1.9         16           1
 Y tyrosine            1.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290478          0.998   PREDICTED: hypothetical protein XP_002347965 
LOC100287986          0.836   PREDICTED: hypothetical protein XP_002343659 
LOC100291803          0.010   PREDICTED: hypothetical protein XP_002345194 
LOC100286923          0.010   PREDICTED: hypothetical protein 
LOC100286923          0.010   PREDICTED: hypothetical protein XP_002343672 
ZFHX4                 0.008   zinc finger homeodomain 4 
PLCH2                 0.008   phospholipase C, eta 2 
ZNF384                0.008   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.008   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.008   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.008   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.008   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.008   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.008   nuclear matrix transcription factor 4 isoform d [Ho...
TENC1                 0.008   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.008   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.008   tensin like C1 domain containing phosphatase isoform...
RP1L1                 0.007   retinitis pigmentosa 1-like 1 
RNF43                 0.007   ring finger protein 43 
RBM42                 0.007   RNA binding motif protein 42 
PANK1                 0.006   pantothenate kinase 1 isoform alpha 
SPATC1                0.006   spermatogenesis and centriole associated 1 isoform ...
SPATC1                0.006   spermatogenesis and centriole associated 1 isoform ...
NACA                  0.006   nascent polypeptide-associated complex alpha subuni...
MAPK1IP1L             0.006   MAPK-interacting and spindle-stabilizing protein [Ho...
EP300                 0.006   E1A binding protein p300 
SFPQ                  0.006   splicing factor proline/glutamine rich (polypyrimidin...
ZNF444                0.006   zinc finger protein 444 
ANKRD17               0.006   ankyrin repeat domain protein 17 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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